Homology Contig-U12531-1 vs Protein
Query= Contig-U12531-1 (Contig-U12531-1Q) /CSM_Contig/Contig-U12531-1Q.Seq.d
(1189 letters)
Database: nrp_B
3,236,559 sequences; 1,051,180,864 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
EF676232_1(EF676232|pid:none) Picea sitchensis clone WS02723_C16... 69 3e-10
BT067187_1(BT067187|pid:none) Zea mays full-length cDNA clone ZM... 69 4e-10
AY579881_1(AY579881|pid:none) Medicago truncatula AML1 mRNA, com... 68 6e-10
AB244279_1(AB244279|pid:none) Oryza sativa Japonica Group OML4 m... 68 6e-10
AB022212_9(AB022212|pid:none) Arabidopsis thaliana genomic DNA, ... 67 1e-09
AK316683_1(AK316683|pid:none) Arabidopsis thaliana AT5G61960 mRN... 67 1e-09
AB244278_1(AB244278|pid:none) Oryza sativa Japonica Group OML3 m... 66 2e-09
AY579887_1(AY579887|pid:none) Citrus unshiu AML1 mRNA, complete ... 66 2e-09
AK319074_1(AK319074|pid:none) Arabidopsis thaliana AT4G18120 mRN... 66 3e-09
AL110123_9(AL110123|pid:none) Arabidopsis thaliana DNA chromosom... 66 3e-09
AC158464_2(AC158464|pid:none) Medicago truncatula chromosome 2 c... 65 4e-09
AK230306_1(AK230306|pid:none) Arabidopsis thaliana mRNA for puta... 65 4e-09
AY062613_1(AY062613|pid:none) Arabidopsis thaliana RNA-binding p... 65 4e-09
AY579889_1(AY579889|pid:none) Solanum tuberosum AML1 mRNA, compl... 64 8e-09
AY579886_1(AY579886|pid:none) Triticum aestivum AML15 mRNA, comp... 63 2e-08
AY579883_1(AY579883|pid:none) Aegilops speltoides AML1 mRNA, com... 63 2e-08
AF474982_5(AF474982|pid:none) Hordeum vulgare clone BAC 011009, ... 63 2e-08
AC146333_1(AC146333|pid:none) Medicago truncatula clone mth2-8d3... 63 2e-08
AB244277_1(AB244277|pid:none) Oryza sativa Japonica Group OML2 m... 62 3e-08
AL844505_229(AL844505|pid:none) Plasmodium falciparum 3D7 chromo... 61 9e-08
EF462991_1(EF462991|pid:none) Populus tremula x Populus alba ter... 60 2e-07
AY579884_1(AY579884|pid:none) Hordeum vulgare AML6 mRNA, complet... 60 2e-07
AC006931_11(AC006931|pid:none) Arabidopsis thaliana chromosome 2... 59 3e-07
AM910993_261(AM910993|pid:none) Plasmodium knowlesi strain H chr... 59 3e-07
AC006580_12(AC006580|pid:none) Arabidopsis thaliana chromosome 2... 59 3e-07
AM456567_1(AM456567|pid:none) Vitis vinifera contig VV78X277621.... 59 4e-07
(O65001) RecName: Full=Protein terminal ear1; &AF047852_1(AF047... 57 1e-06
CR954205_167(CR954205|pid:none) Ostreococcus tauri strain OTTH05... 57 2e-06
(A2WY46) RecName: Full=Protein terminal ear1 homolog; AltName: F... 56 3e-06
(Q0JGS5) RecName: Full=Protein terminal ear1 homolog; AltName: F... 56 3e-06
AC008113_10(AC008113|pid:none) Genomic sequence for Arabidopsis ... 55 5e-06
AC150443_12(AC150443|pid:none) Medicago truncatula chromosome 7 ... 53 2e-05
DQ446931_1(DQ446931|pid:none) Arabidopsis thaliana clone pENTR22... 52 3e-05
DQ446326_1(DQ446326|pid:none) Arabidopsis thaliana clone pENTR22... 52 5e-05
DQ056481_1(DQ056481|pid:none) Arabidopsis thaliana putative RNA-... 52 5e-05
AP000601_2(AP000601|pid:none) Arabidopsis thaliana genomic DNA, ... 51 9e-05
AM920427_469(AM920427|pid:none) Penicillium chrysogenum Wisconsi... 49 5e-04
AC174297_16(AC174297|pid:none) Medicago truncatula clone mth2-73... 48 8e-04
CU633900_280(CU633900|pid:none) Podospora anserina genomic DNA c... 46 0.003
AE017342_206(AE017342|pid:none) Cryptococcus neoformans var. neo... 45 0.004
AM465207_1(AM465207|pid:none) Vitis vinifera contig VV78X046685.... 43 0.019
S58472(S58472) lysine-rich surface antigen - Entamoeba histolyti... 39 0.28
EU970686_1(EU970686|pid:none) Zea mays clone 348882 RNA recognit... 38 0.62
CR382128_95(CR382128|pid:none) Yarrowia lipolytica strain CLIB12... 38 0.62
BC050079_1(BC050079|pid:none) Mus musculus synaptotagmin binding... 37 1.1
AL512486_5(AL512486|pid:none) S.pombe chromosome I BAC pB1A11. 37 1.4
AK078158_1(AK078158|pid:none) Mus musculus adult male medulla ob... 37 1.4
BC015575_1(BC015575|pid:none) Homo sapiens synaptotagmin binding... 37 1.4
(O60506) RecName: Full=Heterogeneous nuclear ribonucleoprotein Q... 37 1.4
AK034845_1(AK034845|pid:none) Mus musculus 12 days embryo embryo... 37 1.4
AB035725_1(AB035725|pid:none) Mus musculus SYNCRIP mRNA, complet... 37 1.4
AL136082_3(AL136082|pid:none) Human DNA sequence from clone RP1-... 37 1.4
(Q7TP47) RecName: Full=Heterogeneous nuclear ribonucleoprotein Q... 37 1.4
AK313572_1(AK313572|pid:none) Homo sapiens cDNA, FLJ94136, highl... 37 1.4
AK299796_1(AK299796|pid:none) Homo sapiens cDNA FLJ50849 complet... 37 1.4
(Q91ZR0) RecName: Full=Heterogeneous nuclear ribonucleoprotein Q... 37 1.4
CP001576_315(CP001576|pid:none) Micromonas sp. RCC299 chromosome... 37 1.8
BT045983_1(BT045983|pid:none) Salmo salar clone ssal-rgf-538-170... 37 1.8
CP001326_401(CP001326|pid:none) Micromonas sp. RCC299 chromosome... 36 2.3
AY648773_1(AY648773|pid:none) Danio rerio KIAA0682-like mRNA, co... 36 2.3
DQ648528_1(DQ648528|pid:none) Bombyx mori spliceosomal protein o... 36 3.1
CP000585_410(CP000585|pid:none) Ostreococcus lucimarinus CCE9901... 36 3.1
AY299514_1(AY299514|pid:none) Danio rerio nil per os (npo) mRNA,... 36 3.1
BC082875_1(BC082875|pid:none) Xenopus laevis hypothetical LOC494... 36 3.1
BC163877_1(BC163877|pid:none) Danio rerio RNA binding motif prot... 36 3.1
BC090711_1(BC090711|pid:none) Danio rerio RNA binding motif prot... 36 3.1
CU633900_930(CU633900|pid:none) Podospora anserina genomic DNA c... 36 3.1
CP000021_486(CP000021|pid:none) Vibrio fischeri ES114 chromosome... 35 4.0
AF031166_1(AF031166|pid:none) Homo sapiens SRp46 splicing factor... 35 4.0
AC144431_33(AC144431|pid:none) Medicago truncatula clone mth2-21... 35 5.2
BC040844_1(BC040844|pid:none) Homo sapiens synaptotagmin binding... 35 6.8
BC167335_1(BC167335|pid:none) Xenopus tropicalis cDNA clone MGC:... 35 6.8
AM471698_4(AM471698|pid:none) Vitis vinifera contig VV78X231541.... 34 8.9
>EF676232_1(EF676232|pid:none) Picea sitchensis clone WS02723_C16
unknown mRNA.
Length = 892
Score = 68.9 bits (167), Expect = 3e-10
Identities = 40/112 (35%), Positives = 59/112 (52%), Gaps = 3/112 (2%)
Frame = +3
Query: 855 INLDDIXSGVNQKTTVMIXNIPYKFTH-LNLDTMFKKHNLAYDYLYMPTDPITKAHYGYT 1031
++LD I G + +TT+MI NIP K+T + L T+ + H YD+LY+P D K + GY
Sbjct: 696 LDLDKIMRGEDARTTIMIKNIPNKYTSKMLLATIDEHHRGTYDFLYLPIDFKNKCNVGYA 755
Query: 1032 FVXFVNYQDIIQLCSLYNNKKLG--NHPKFCEITYARLQGFPXTSAXXANNN 1181
F+ + II +N KK N K + YAR+QG A N++
Sbjct: 756 FINMTSPSHIIPFYQAFNGKKWEKFNSEKVASLAYARIQGKTALIAHFQNSS 807
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 1,330,964,796
Number of extensions: 24123676
Number of successful extensions: 37381
Number of sequences better than 10.0: 73
Number of HSP's gapped: 37327
Number of HSP's successfully gapped: 73
Length of query: 396
Length of database: 1,051,180,864
Length adjustment: 131
Effective length of query: 265
Effective length of database: 627,191,635
Effective search space: 166205783275
Effective search space used: 166205783275
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
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