Dictyostelium discoideum cDNA Contig-U12531-1

Assembled

Chromosomal Location of Contig-U12531-1

Sequence Contig-U12531-1

AAGAAATAGT CGTTAAAAAG ATAGAGGATA AAAAACAAGA AACAGAACCA
TTCAATATTG ATGATTTAGA TTTAGATGAT TTAGATGCAC AACTTGATAG
TGTAATAAAT GATTACGAAA CAACAGAAGT TATAAATATT AAAGATGATT
TTATTAGAAT TCAAAATGAA ATCTCTAAAC AACATTTCGA TCGATTTGGT
GCAGATGAAT CAATTGTTAC AACCTTTAAT CCTAATGAAC TTCTTCTAAA
GAGGAGAGAG GGAGAAAAAA TGGAAGAAGA TGAAAATCAA ATAGAAGAAC
GTGAAGAAAA AGAAGAATCA GAAGAAGAAG ATGATGATGA ATCAGAAGAA
GAAGAATCAG AAGAATCAGA AGAAGAAGAA ATTGCTGATT ATGAAGAATC
AAATGAAATT GAACAAAAAT TAGATACAAA TCAATTTAAT CCACAGGATA
GAAAAGTTTC ATTTTTAATT CGTCCTCATG GTGGAAAAGC AAGTAGAAAT
CTTCTTATAA AGACTAATGC TAATATTGAT TTGAGAAATT TAATTTGTAA
ATTTAAAGAA CATGGTGAAA TTAAATCAGT TTATCAAAAT ATTACAAGAT
CTGGTACAAT GCATGTTGT- ---------- ---------N NNNNNNNNAT
TATAANAATA AAAACTTTGG AATACCACCA TTAAATGTTT CNCAACTTTA
CAATAATTCA AAATCATCAC CAACTCAAAG TCCAAGATAT TCACATGACC
AACAACAACA GCANCAACAA CAACATTCAT CACAACCAAC ATCTCCACAT
GTTTCAAAAT CTGGTAGTAG CGGTAGTTTT GAAGGANCAG ATGATAGTCA
TATTATCAAT TTGGATGATA TTNGTAGTGG AGTAAATCAA AAAACTACTG
TTATGATTAA NAATATTCCA TACAAATTCA CTCATTTAAA TTTAGATACA
ATGTTTAAAA AACATAATTT AGCTTATGAT TATTTATATA TGCCAACTGA
TCCAATTACA AAGGCACATT ATGGATACAC TTTCGTTNAT TTCGTAAATT
ATCAAGACAT CATTCAATTA TGTTCACTTT ACAATAATAA AAAATTGGGT
AACCATCCAA AGTTTTGTGA AATAACTTAT GCAAGACTCC AAGGTTTTCC
TCNNACTTCA GCCNCTGNAG CAAATAATAA TAATATAAT

Translated Amino Acid Sequence Contig-U12531-1

EIVVKKIEDKKQETEPFNIDDLDLDDLDAQLDSVINDYETTEVINIKDDFIRIQNEISKQ
HFDRFGADESIVTTFNPNELLLKRREGEKMEEDENQIEEREEKEESEEEDDDESEEEESE
ESEEEEIADYEESNEIEQKLDTNQFNPQDRKVSFLIRPHGGKASRNLLIKTNANIDLRNL
ICKFKEHGEIKSVYQNITRSGTMHVVXX---

---XXXXYXNKNFGIPPLNVSQLYNNSKSSPTQSPRYSHDQQQQXQQQHSSQPTSPHVSK
SGSSGSFEGXDDSHIINLDDIXSGVNQKTTVMIXNIPYKFTHLNLDTMFKKHNLAYDYLY
MPTDPITKAHYGYTFVXFVNYQDIIQLCSLYNNKKLGNHPKFCEITYARLQGFPXTSAXX
ANNNNI

Homology Contig-U12531-1 vs CSM-Contig

Sequences producing significant alignments:                        (bits)  Value


Contig-U12531-1 (Contig-U12531-1Q) /CSM_Contig/Conti...   739  0.0
Contig-U13880-1 (Contig-U13880-1Q) /CSM_Contig/Conti...    40  0.005
Contig-U12495-1 (Contig-U12495-1Q) /CSM_Contig/Conti...    38  0.021
Contig-U12487-1 (Contig-U12487-1Q) /CSM_Contig/Conti...    38  0.021
Contig-U12395-1 (Contig-U12395-1Q) /CSM_Contig/Conti...    38  0.021
Contig-U12553-1 (Contig-U12553-1Q) /CSM_Contig/Conti...    36  0.084
Contig-U12500-1 (Contig-U12500-1Q) /CSM_Contig/Conti...    36  0.084
Contig-U12444-1 (Contig-U12444-1Q) /CSM_Contig/Conti...    36  0.084
Contig-U11900-1 (Contig-U11900-1Q) /CSM_Contig/Conti...    36  0.084
Contig-U02210-1 (Contig-U02210-1Q) /CSM_Contig/Conti...    36  0.084

Homology Contig-U12531-1 vs DNA

Sequences producing significant alignments:                  (bits) Value  N


(BJ444154) Dictyostelium discoideum cDNA clone:ddv55m12, 3' ...   741   0.0    2
(BJ425345) Dictyostelium discoideum cDNA clone:ddv55m12, 5' ...   490   0.0    2
(FN357516) Schistosoma mansoni genome sequence supercontig S...    38   0.12   2
(DX984431) CHORI103-2E17.TV CHORI103 Schistosoma mansoni gen...    38   0.16   2
(BM275152) PfESToaa80f11.y1 Plasmodium falciparum 3D7 gameto...    38   0.57   3
(BM274775) PfESToaa74g10.y1 Plasmodium falciparum 3D7 gameto...    38   0.57   3
(AP003331) Oryza sativa Japonica Group genomic DNA, chromoso...    48   0.82   1
(EE263958) D07_D07gf4n14_pDNRf_505927 Myzus persicae, line G...    48   0.82   1
(DW014216) w7k20_M13F Myzus persicae, tobacco lineage, whole...    48   0.82   1
(DW014077) w7d4_M13F Myzus persicae, tobacco lineage, whole ...    48   0.82   1

Homology Contig-U12531-1 vs Protein

Sequences producing significant alignments:                      (bits) Value


EF676232_1(EF676232|pid:none) Picea sitchensis clone WS02723_C16...    69   3e-10
BT067187_1(BT067187|pid:none) Zea mays full-length cDNA clone ZM...    69   4e-10
AY579881_1(AY579881|pid:none) Medicago truncatula AML1 mRNA, com...    68   6e-10
AB244279_1(AB244279|pid:none) Oryza sativa Japonica Group OML4 m...    68   6e-10
AB022212_9(AB022212|pid:none) Arabidopsis thaliana genomic DNA, ...    67   1e-09
AK316683_1(AK316683|pid:none) Arabidopsis thaliana AT5G61960 mRN...    67   1e-09
AB244278_1(AB244278|pid:none) Oryza sativa Japonica Group OML3 m...    66   2e-09
AY579887_1(AY579887|pid:none) Citrus unshiu AML1 mRNA, complete ...    66   2e-09
AK319074_1(AK319074|pid:none) Arabidopsis thaliana AT4G18120 mRN...    66   3e-09
AL110123_9(AL110123|pid:none) Arabidopsis thaliana DNA chromosom...    66   3e-09