Homology Contig-U12531-1 vs DNA
Query= Contig-U12531-1 (Contig-U12531-1Q) /CSM_Contig/Contig-U12531-1Q.Seq.d
(1189 letters)
Database: ddbj_A
108,600,042 sequences; 106,710,029,556 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value N
(BJ444154) Dictyostelium discoideum cDNA clone:ddv55m12, 3' ... 741 0.0 2
(BJ425345) Dictyostelium discoideum cDNA clone:ddv55m12, 5' ... 490 0.0 2
(FN357516) Schistosoma mansoni genome sequence supercontig S... 38 0.12 2
(DX984431) CHORI103-2E17.TV CHORI103 Schistosoma mansoni gen... 38 0.16 2
(BM275152) PfESToaa80f11.y1 Plasmodium falciparum 3D7 gameto... 38 0.57 3
(BM274775) PfESToaa74g10.y1 Plasmodium falciparum 3D7 gameto... 38 0.57 3
(AP003331) Oryza sativa Japonica Group genomic DNA, chromoso... 48 0.82 1
(EE263958) D07_D07gf4n14_pDNRf_505927 Myzus persicae, line G... 48 0.82 1
(DW014216) w7k20_M13F Myzus persicae, tobacco lineage, whole... 48 0.82 1
(DW014077) w7d4_M13F Myzus persicae, tobacco lineage, whole ... 48 0.82 1
(DT970061) CLJ126-C09.x1d-t SHGC-CLJ Gasterosteus aculeatus ... 48 0.82 1
(EY497720) CBBP3718.rev CBBP Hirudo medicinalis hermaphrodit... 48 0.82 1
(EY496316) CBBP2847.fwd CBBP Hirudo medicinalis hermaphrodit... 48 0.82 1
(EY496315) CBBP2847.rev CBBP Hirudo medicinalis hermaphrodit... 48 0.82 1
(EY484422) CBBP13571.fwd CBBP Hirudo medicinalis hermaphrodi... 48 0.82 1
(EY484421) CBBP13571.rev CBBP Hirudo medicinalis hermaphrodi... 48 0.82 1
(EY483641) CBBP13100.fwd CBBP Hirudo medicinalis hermaphrodi... 48 0.82 1
(EY483640) CBBP13100.rev CBBP Hirudo medicinalis hermaphrodi... 48 0.82 1
(AC168706) Strongylocentrotus purpuratus clone R3-3011L19, W... 44 0.88 6
(BX255881) Zebrafish DNA sequence from clone CH211-268E23 in... 34 1.1 7
(AE014185) Plasmodium falciparum 3D7 chromosome 10, complete... 36 1.2 10
(AL844508) Plasmodium falciparum 3D7 chromosome 9. 40 1.8 10
(CR847565) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 34 1.9 9
(CP001461) Borrelia burgdorferi WI91-23 plasmid WI91-23_lp17... 38 2.1 3
(AC091589) Homo sapiens chromosome 18, clone RP11-635B11, co... 42 2.1 4
(DX097085) AU_BAC012B2A03_T7 CHORI212 Ictalurus punctatus ge... 32 2.2 2
(BX511025) Zebrafish DNA sequence from clone DKEY-262L17 in ... 46 3.2 1
(BX321892) Zebrafish DNA sequence from clone DKEYP-21D12 in ... 46 3.2 1
(FJ169855) Rotavirus A strain 02V0002G3 segment 3, complete ... 46 3.2 1
(BV274199) S232P6357FD3.T0 Beagle Canis familiaris STS genom... 46 3.2 1
(U70856) Caenorhabditis elegans cosmid F57F4, complete seque... 46 3.2 1
(ER377490) 1093042166014 Global-Ocean-Sampling_GS-34-01-01-1... 46 3.2 1
(EK400369) 1095469538497 Global-Ocean-Sampling_GS-31-01-01-1... 46 3.2 1
(EJ281875) 1095366059234 Global-Ocean-Sampling_GS-27-01-01-1... 46 3.2 1
(EL491878) CHUS7194.b1_C24.ab1 CHU(LMS) puzzle sunflower Hel... 46 3.2 1
(EC606867) Y21G05 YLX600 Hevea brasiliensis cDNA clone Y21G0... 46 3.2 1
(DN565597) 90853264 Sea Urchin primary mesenchyme cell cDNA ... 46 3.2 1
(CV887963) tak92g08.y1 Hydra EST UCI 6 Hydra magnipapillata ... 46 3.2 1
(AJ806022) Antirrhinum majus EST, clone 018_6_02_l22. 46 3.2 1
(AJ802122) Antirrhinum majus EST, clone 018_5_03_d07. 46 3.2 1
(GR778689) CBWO770.b1 CBWO Melampsora larici-populina germin... 46 3.2 1
(GE491771) CCFS5277.g1_I24.ab1 CCF(STU) sunflower Helianthus... 46 3.2 1
(GE487663) CCFS3201.g1_B09.ab1 CCF(STU) sunflower Helianthus... 46 3.2 1
(FM916069) Brachionus plicatilis EST 5' end, clone sb102P002... 46 3.2 1
(FM914699) Brachionus plicatilis EST 5' end, clone sb102P001... 46 3.2 1
(EX605060) 255349930 Pea aphid whole body normalized full le... 46 3.2 1
(CP000246) Clostridium perfringens ATCC 13124, complete genome. 46 3.2 1
(CU137654) Medicago truncatula chromosome 5 clone mth2-13f1,... 38 3.4 4
(EK280934) 1095462295089 Global-Ocean-Sampling_GS-31-01-01-1... 40 3.4 2
(EJ424740) 1093012259095 Global-Ocean-Sampling_GS-28-01-01-1... 44 3.9 2
(EK116209) 1092963247836 Global-Ocean-Sampling_GS-31-01-01-1... 38 4.0 2
(AL953914) Zebrafish DNA sequence from clone CH211-235I18 in... 42 4.7 4
(AC115768) Mus musculus chromosome 19, clone RP23-107E10, co... 38 4.7 6
(ER519749) 1093015555886 Global-Ocean-Sampling_GS-35-01-01-1... 36 5.4 3
(AC186413) Zea mays chromosome 1 clone CH201-545N4; ZMMBBc05... 32 6.1 2
(AC179767) Strongylocentrotus purpuratus clone R3-1016H24, W... 36 6.1 5
(AC220977) Zea mays chromosome 1 clone CH201-548E22; ZMMBBc0... 32 6.1 2
(BX649314) Zebrafish DNA sequence from clone DKEYP-111A3 in ... 42 6.2 6
(CP000963) Clostridium botulinum A3 str. Loch Maree plasmid ... 44 6.5 8
(AL929328) Mouse DNA sequence from clone RP23-332P16 on chro... 44 7.0 6
(DY683257) TTEA356T1V Tetrahymena thermophila EST library, c... 34 7.9 3
(DY680627) TTEA393T1V Tetrahymena thermophila EST library, c... 34 7.9 3
(GQ354526) Dekkera bruxellensis strain CBS 2499 mitochondrio... 34 7.9 6
(AM876091) Venerupis (Ruditapes) philippinarum EST, 5' end s... 36 7.9 2
(CZ523374) GMW2-73N21a.b1 GMW2 Glycine max genomic, genomic ... 32 8.1 2
(FH591418) CHO_OF4660xe15r1.ab1 CHO_OF4 Nicotiana tabacum ge... 32 8.1 2
(GN080409) Sequence 176 from Patent WO2009029771. 32 8.2 2
(AC221913) Bos taurus clone CH240-378A13, WORKING DRAFT SEQU... 42 8.2 4
(CC900869) ZMMBBb0236N19.f ZMMBBb Zea mays subsp. mays genom... 32 8.2 2
(DY682871) TTEA293THD Tetrahymena thermophila EST library, c... 34 8.2 3
(DY682870) TTEA293THC Tetrahymena thermophila EST library, c... 34 8.2 3
(DY682602) TTEA256THD Tetrahymena thermophila EST library, c... 34 8.2 3
(DY682601) TTEA256THC Tetrahymena thermophila EST library, c... 34 8.2 3
(DY681523) TTEA136THD Tetrahymena thermophila EST library, c... 34 8.2 3
(DY681522) TTEA136THC Tetrahymena thermophila EST library, c... 34 8.2 3
(AC123513) Dictyostelium discoideum strain AX4 chromosome 2 ... 38 8.3 7
(AC180764) Strongylocentrotus purpuratus clone R3-3080J22, W... 36 8.4 5
(CX578928) TTE00016014 Amplicon Express - Conjugative Form T... 34 8.6 3
(CX578533) TTE00016050 Amplicon Express - Conjugative Form T... 34 8.6 3
(CX577909) TTE00015910 Amplicon Express - Conjugative Form T... 34 8.6 3
(BX293980) Mycoplasma mycoides subsp. mycoides SC str. PG1, ... 44 9.5 16
(AM876141) Venerupis (Ruditapes) philippinarum EST, 5' end s... 36 9.7 2
(AM877611) Venerupis (Ruditapes) philippinarum EST, 5' end s... 36 9.8 2
>(BJ444154) Dictyostelium discoideum cDNA clone:ddv55m12, 3' end,
single read.
Length = 542
Score = 741 bits (374), Expect(2) = 0.0
Identities = 398/398 (100%)
Strand = Plus / Minus
Query: 792 tctccacatgtttcaaaatctggtagtagcggtagttttgaaggancagatgatagtcat 851
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 tctccacatgtttcaaaatctggtagtagcggtagttttgaaggancagatgatagtcat 340
Query: 852 attatcaatttggatgatattngtagtggagtaaatcaaaaaactactgttatgattaan 911
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 attatcaatttggatgatattngtagtggagtaaatcaaaaaactactgttatgattaan 280
Query: 912 aatattccatacaaattcactcatttaaatttagatacaatgtttaaaaaacataattta 971
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 aatattccatacaaattcactcatttaaatttagatacaatgtttaaaaaacataattta 220
Query: 972 gcttatgattatttatatatgccaactgatccaattacaaaggcacattatggatacact 1031
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 219 gcttatgattatttatatatgccaactgatccaattacaaaggcacattatggatacact 160
Query: 1032 ttcgttnatttcgtaaattatcaagacatcattcaattatgttcactttacaataataaa 1091
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 159 ttcgttnatttcgtaaattatcaagacatcattcaattatgttcactttacaataataaa 100
Query: 1092 aaattgggtaaccatccaaagttttgtgaaataacttatgcaagactccaaggttttcct 1151
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 99 aaattgggtaaccatccaaagttttgtgaaataacttatgcaagactccaaggttttcct 40
Query: 1152 cnnacttcagccnctgnagcaaataataataatataat 1189
||||||||||||||||||||||||||||||||||||||
Sbjct: 39 cnnacttcagccnctgnagcaaataataataatataat 2
Score = 188 bits (95), Expect(2) = 0.0
Identities = 101/101 (100%)
Strand = Plus / Minus
Query: 649 attataanaataaaaactttggaataccaccattaaatgtttcncaactttacaataatt 708
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 attataanaataaaaactttggaataccaccattaaatgtttcncaactttacaataatt 483
Query: 709 caaaatcatcaccaactcaaagtccaagatattcacatgac 749
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 caaaatcatcaccaactcaaagtccaagatattcacatgac 442
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Number of Sequences: 108600042
Number of Hits to DB: 1,348,104,169
Number of extensions: 91789411
Number of successful extensions: 10412542
Number of sequences better than 10.0: 83
Length of query: 1189
Length of database: 106,710,029,556
Length adjustment: 24
Effective length of query: 1165
Effective length of database: 104,103,628,548
Effective search space: 121280727258420
Effective search space used: 121280727258420
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
Dictyostelium discoideum cDNA Project Home