Dictyostelium discoideum cDNA Contig-U12507-1

Assembled

Chromosomal Location of Contig-U12507-1

NO HIT FOUND.

Sequence Contig-U12507-1

ATAATAACAT CAATAGTAAT GGTACCAATA TAAATAATAG TAGTAGCGAA
ACAACTATAG TTAATGATGA TGATGATGAT GATGATGATT ACGATAATGA
ATCAAATGAA AGTTTATGTG ATAGTGATAA AGAGAAATTA GTTCTACCAC
CAACAATAGA AATATCAACA ACCGCATCCA TATCATGTTC TTCATCACAT
TCATCAGAAA TTGATAATTA CATTGCAAAT TTGGGTCTTA AAGATGATGA
AAATATTGGT GATTCTTCAA CAGAATCTGA ATCAATTGAT GAACATATTA
AACATCATGA AATTGAAAAA CAACAGGAAC AAGAACACCA AGAACACCAA
CAAGAACAAG AACAACAACA AGAACAAGAA AAAGAAGAAC AACAAGAAAA
AGAAGAAAAA ATCCTTGAAA TTGAAAAAAA AGAGGAAGAA CTAAAACAAC
AAATAACTGA AACTGATACT AGTAATACAT GTGCTACTTC TACCAATAAT
ACTTCTACTA CTACTTCTAC TACTACTACA ACAACAACAA ACACTACAAC
AACTAATAAT ATAAATGGTA CAACACCAAT TACATCAAGA TCATCATCAA
TTTCATCAGT ATCATCATCA TTATCATCAT CATCATTATT ATCAGCAGTA
TCAGATTCAT CAGTACAATC ATTAAGTTCA TCAATA---- ------NNNN
NNNNNAAAAC TTTACGAACT TTACATAAAC AACTATGAAA AGGCATTCGC
GTTGACTCGT TACTTTAAAA TCAATCCAAA CTATCAAGAC ATTCAGAAAT
CAATCTATCA GAAAGAAAAG GATATACGTT GTAGACATTT GGATTTCGGT
AGTTTCTTGG TTATTCCCAT TCAAAGATTA CCACGTTATA TCGTGTTGTT
GAAAGAGATG GAAAAACATA CACCAACCGA TAATCCTGAT TTCAATTTCA
TAGCATTGTC ATTGGTTCAA CTTCAAGATT TAACTTTATA TTTAAATGAA
TCTAAAAGGA AATCAAGTAA TTCCGATAAA ATCGATGAAA TCAAACAATC
AGTATTTGGT GCAACCGCAA TCATTGGTCA AAGTAAATAC ATTATGGAAG
GTCAATTATC CCTCTTAAAA GGTGTTGTAG CATCAACTAA AAAAGATTTA
TTTATTTATT TATTTAAAGA TTGTATAATT TGTACAGAAA TTAATTCAAA
CTATCAAAAA GATGGTAGTA ATAATAATAA TAATAATAAT AATAACAATA
GTAATAATAG TAATAGTAAT AGTAGTAGTA ATAATAGCGG CAGTAATAAT
AGTAGTAATA ATAATTCACC AAATAATTTA ACACCAAAAA AACAAACTTT
TAAATCATTG TCAACATCAT CTTCAACACC AAATAATTTA TCACAATCAT
CATCACCAAA TAATACATTA ACTCATTCCA TTTCAAGTGG TGGTAATGGT
ACACAACCAT TATCAAATCA ATTAAATAAT AGTTCAAACA CTAGTAATAT
CTTTTATCAG AGAGTTATAT TTAAAAGTAT AACATTCTCT GATGTAAAAG
CGATTTCAGC ATTAAAAAAT TTTAAAGATT CTTTCCAAGT TGTTACCTCT
AAAAAAGTTT ATACGTTTGT GGCACCAAAC ACTGATAATA GAGATAAATG
GGTTTCTGTT TTAAATGATC TTCAACAACA ATTAACTCCA CCACCTTCTC
CAACTTTATC AAGAAGTAAT AGATTCACTG GTAGTTTATC ACCAACTTTA
AAAAGAAAAA ATAGAAATTC TGTACAGTTA TCACAATCAA ATAATAATAA
TTCCACACCT CAACAATAAA AAAAAAAAAA A

Translated Amino Acid Sequence Contig-U12507-1

NNINSNGTNINNSSSETTIVNDDDDDDDDYDNESNESLCDSDKEKLVLPPTIEISTTASI
SCSSSHSSEIDNYIANLGLKDDENIGDSSTESESIDEHIKHHEIEKQQEQEHQEHQQEQE
QQQEQEKEEQQEKEEKILEIEKKEEELKQQITETDTSNTCATSTNNTSTTTSTTTTTTTN
TTTTNNINGTTPITSRSSSISSVSSSLSSSSLLSAVSDSSVQSLSSSIXXX---

---KLYELYINNYEKAFALTRYFKINPNYQDIQKSIYQKEKDIRCRHLDFGSFLVIPIQR
LPRYIVLLKEMEKHTPTDNPDFNFIALSLVQLQDLTLYLNESKRKSSNSDKIDEIKQSVF
GATAIIGQSKYIMEGQLSLLKGVVASTKKDLFIYLFKDCIICTEINSNYQKDGSNNNNNN
NNNNSNNSNSNSSSNNSGSNNSSNNNSPNNLTPKKQTFKSLSTSSSTPNNLSQSSSPNNT
LTHSISSGGNGTQPLSNQLNNSSNTSNIFYQRVIFKSITFSDVKAISALKNFKDSFQVVT
SKKVYTFVAPNTDNRDKWVSVLNDLQQQLTPPPSPTLSRSNRFTGSLSPTLKRKNRNSVQ
LSQSNNNNSTPQQ*kkkk

Homology Contig-U12507-1 vs CSM-Contig

Sequences producing significant alignments:                        (bits)  Value


Contig-U12507-1 (Contig-U12507-1Q) /CSM_Contig/Conti...  1017  0.0
Contig-U11814-1 (Contig-U11814-1Q) /CSM_Contig/Conti...    52  2e-06
Contig-U01683-1 (Contig-U01683-1Q) /CSM_Contig/Conti...    48  3e-05
Contig-U12201-1 (Contig-U12201-1Q) /CSM_Contig/Conti...    46  1e-04
Contig-U11170-1 (Contig-U11170-1Q) /CSM_Contig/Conti...    46  1e-04
Contig-U11152-1 (Contig-U11152-1Q) /CSM_Contig/Conti...    46  1e-04
Contig-U10168-1 (Contig-U10168-1Q) /CSM_Contig/Conti...    46  1e-04
Contig-U07033-1 (Contig-U07033-1Q) /CSM_Contig/Conti...    46  1e-04
Contig-U06353-1 (Contig-U06353-1Q) /CSM_Contig/Conti...    46  1e-04
Contig-U12500-1 (Contig-U12500-1Q) /CSM_Contig/Conti...    40  0.008

Homology Contig-U12507-1 vs DNA

Sequences producing significant alignments:                  (bits) Value  N


(BJ442156) Dictyostelium discoideum cDNA clone:ddv49b06, 3' ...   807   0.0    3
(AU060826) Dictyostelium discoideum slug cDNA, clone SLB614.      977   0.0    1
(AU033919) Dictyostelium discoideum slug cDNA, clone SLB614.      694   0.0    2
(BJ423380) Dictyostelium discoideum cDNA clone:ddv49b06, 5' ...   454   e-164  4
(GR581798) CBZZ1648.g1 CBZZ Dictyostelium purpureum 18 hr st...   101   1e-56  4
(GR564828) CBTF1077.g1 CBTF Dictyostelium purpureum 12 hr ve...   101   2e-56  4
(GR566873) CBTF2655.g1 CBTF Dictyostelium purpureum 12 hr ve...   101   1e-46  5
(GR565277) CBTF1441.g1 CBTF Dictyostelium purpureum 12 hr ve...   101   1e-43  6
(AL670941) Mouse DNA sequence from clone RP23-291M22 on chro...    62   8e-05  1
(AC118760) Rattus norvegicus clone CH230-152E16, *** SEQUENC...    62   8e-05  1

Homology Contig-U12507-1 vs Protein

Sequences producing significant alignments:                      (bits) Value


T18289(T18289) racGAP protein - slime mold (Dictyostelium discoi...    85   8e-15
(Q1ZXH8) RecName: Full=Guanine exchange factor for Rac 30;             84   2e-14
(Q55E26) RecName: Full=Rac guanine nucleotide exchange factor B;...    80   2e-13
AF326352_1(AF326352|pid:none) Caenorhabditis elegans putative Rh...    79   4e-13
AB060647_1(AB060647|pid:none) Caenorhabditis elegans exc-5 mRNA ...    79   4e-13
T19678(T19678)hypothetical protein C33D9.1 - Caenorhabditis eleg...    79   4e-13
BX005416_1(BX005416|pid:none) Zebrafish DNA sequence from clone ...    75   8e-12
AF064244_1(AF064244|pid:none) Homo sapiens intersectin long form...    74   2e-11
BX005458_2(BX005458|pid:none) Zebrafish DNA sequence from clone ...    72   5e-11
BC156473_1(BC156473|pid:none) Synthetic construct Mus musculus c...    72   7e-11