<Clone: Contig-U12480-1> <SEQ> <Translated> <CONTIG> <DNA> <Protein> <PSORT> <MOTIF>

Dictyostelium discoideum cDNA Contig-U12480-1

Dictyostelium discoideum cDNA Project Home

Assembled

Chromosomal Location of Contig-U12480-1

< more Chromosomal info >

Chromosome Number 2
Length 8467578
Start Poin 5,612,218
End Point 5,611,086
Strand MINUS

Sequence Contig-U12480-1

AGAGGATGAA CTTGAAGAGA TTCTTTGTAA ACGTTGCGCA TTACCACCAT
CCTATTGCAA GAAATTAGTA TTAATTATGA AAGAACTTCA ATTGAATAGA
CAAGGTAGTA ACCAAGTTTT CGCAGGTAAA CATGGTGCAA TCACATTCCG
TGATTTGTTC CGTTGGGCAG AACGTCAACC TTCATCCTAT GAAGAATTGG
GTATTGCAGG TTACCAACTC TTGGCTGAAC GTTTAAGAAA AGATGAAGAG
AAATTAATAA TTAAACAAGT GATTGAAAAA CATTTAAAGA TTAAATTAGA
TATCGAATCT ATCTATTCAT GTGATGATAA ACCAGAGTTT TTAAAACTTT
TACAATTATT AAGTGAGAAT GATTCAGAAT TATCAAAATC AAATCATTTA
GAGAAAATCG TTTGGACAAG ATCAATGAAA CGTTTGTTTA GTTTGGTTGG
TAAATGTTTG GAACATAAAG AACCAATTTT ATTAGTTGGT GAAACTGGTT
GTTCTAAAAC TACAATTTGT CAATTATATT CAATTTTAAA TAAACAAAAA
CTTCATATAC TCAATTGTCA TCAACATACT GAAACTGCTG ATTTCATTGG
TGGTTT---- ---------- ------NNNN NNNNNCTGCA TTAGGTATTC
CATTGGAAAG TTTAACTCGT ACAATGATTG ATTTCCATAA TCAAATTTTC
ACTCAACTTT CATCAACAAT TGAAAATCCA TGTACACTCT CACAATTATT
ATATTGGGGT AAATTAATAC TTGATCAATT ACAAAGAGGT TTTTCACTAT
TAAATTCAAT TCGTAATTCA ATGGAACAAA TTTACATTCG TCCACGTAGA
CATTTAACTC AACGTCAATT GGTTACAAAT ATCTTTAATT CAATTTTCAA
TGAATCTGCA ATCAAATCAA TCCTATGTGA AGATCAAACA GTTTTAGGTA
TATATCCACA CTTTATCAAA GGTAAAGATT ATGTTACTGA TTCAATTTCA
ACAACAATGA AAATGAATTA TCAATTCTTT GAATATTATT TAAAGAGATT
AATGAATTCT TTATCATCAT CTTCATCATC ATCATCACAA CAACAACAAC
AAGATGAATC AAATTATAAG ATTTCAGCAA AATTCCTAAT TGAAAATATT
AATTCATCAC

Translated Amino Acid Sequence Contig-U12480-1

<All Frames> 
EDELEEILCKRCALPPSYCKKLVLIMKELQLNRQGSNQVFAGKHGAITFRDLFRWAERQP
SSYEELGIAGYQLLAERLRKDEEKLIIKQVIEKHLKIKLDIESIYSCDDKPEFLKLLQLL
SENDSELSKSNHLEKIVWTRSMKRLFSLVGKCLEHKEPILLVGETGCSKTTICQLYSILN
KQKLHILNCHQHTETADFIGGXXX---

---XXXXALGIPLESLTRTMIDFHNQIFTQLSSTIENPCTLSQLLYWGKLILDQLQRGFS
LLNSIRNSMEQIYIRPRRHLTQRQLVTNIFNSIFNESAIKSILCEDQTVLGIYPHFIKGK
DYVTDSISTTMKMNYQFFEYYLKRLMNSLSSSSSSSSQQQQQDESNYKISAKFLIENINS
S


Homology Contig-U12480-1 vs CSM-Contig

<more CONTIG info> 
Sequences producing significant alignments:                        (bits)  Value


Contig-U12480-1 (Contig-U12480-1Q) /CSM_Contig/Conti...  1201  0.0
Contig-U14461-1 (Contig-U14461-1Q) /CSM_Contig/Conti...    42  0.001
Contig-U13570-1 (Contig-U13570-1Q) /CSM_Contig/Conti...    42  0.001
Contig-U11718-1 (Contig-U11718-1Q) /CSM_Contig/Conti...    42  0.001
Contig-U01598-1 (Contig-U01598-1Q) /CSM_Contig/Conti...    42  0.001
Contig-U13334-1 (Contig-U13334-1Q) /CSM_Contig/Conti...    40  0.005
Contig-U12054-1 (Contig-U12054-1Q) /CSM_Contig/Conti...    40  0.005
Contig-U14167-1 (Contig-U14167-1Q) /CSM_Contig/Conti...    38  0.021
Contig-U13737-1 (Contig-U13737-1Q) /CSM_Contig/Conti...    38  0.021
Contig-U13546-1 (Contig-U13546-1Q) /CSM_Contig/Conti...    38  0.021


Homology Contig-U12480-1 vs DNA

<more DNA info> 
Sequences producing significant alignments:                  (bits) Value  N


(BJ422360) Dictyostelium discoideum cDNA clone:ddv45m16, 5' ...  1201   0.0    1
(BJ441100) Dictyostelium discoideum cDNA clone:ddv45m16, 3' ...   846   0.0    2
(BH156310) ENTSB23TR Entamoeba histolytica Sheared DNA Entam...    42   2e-05  3
(CP001056) Clostridium botulinum B str. Eklund 17B, complete...    36   2e-04  20
(DL267631) METHODS FOR ANALYZING GENES OF INDUSTRIAL YEASTS.       58   8e-04  1
(DJ134080) Method for identification of useful proteins deri...    58   8e-04  1
(HB146346) Sequence 4700 from Patent WO2006024951.                 58   8e-04  1
(HA142999) Sequence 4700 from Patent WO2006024892.                 58   8e-04  1
(AZ671663) ENTJM03TF Entamoeba histolytica Sheared DNA Entam...    40   0.004  3
(CR762487) Zebrafish DNA sequence from clone CH211-197G14 in...    42   0.005  7


Homology Contig-U12480-1 vs Protein

<more Protein info> 
Sequences producing significant alignments:                      (bits) Value


(Q869L3) RecName: Full=Midasin; AltName: Full=MIDAS-containing p...   407   e-112
AC116960_63(AC116960|pid:none) Dictyostelium discoideum chromoso...   406   e-112
AC150203_9(AC150203|pid:none) Medicago truncatula clone mth2-65b...   202   2e-50
CR954201_404(CR954201|pid:none) Ostreococcus tauri strain OTTH05...   202   2e-50
AM502238_28(AM502238|pid:none) Leishmania infantum chromosome 20.     199   2e-49
CT005259_26(CT005259|pid:none) Leishmania major strain Friedlin,...   196   1e-48
(Q9NU22) RecName: Full=Midasin; AltName: Full=MIDAS-containing p...   192   2e-47
AL929603_82(AL929603|pid:none) Trypanosoma brucei chromosome 1, ...   190   9e-47
(O94248) RecName: Full=Midasin; AltName: Full=MIDAS-containing p...   183   1e-44
CP001575_174(CP001575|pid:none) Micromonas sp. RCC299 chromosome...   179   2e-43


<Clone: Contig-U12480-1> <SEQ> <Translated> <CONTIG> <DNA> <Protein> <PSORT> <MOTIF>

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