Homology Contig-U12480-1 vs DNA
Query= Contig-U12480-1 (Contig-U12480-1Q) /CSM_Contig/Contig-U12480-1Q.Seq.d
(1160 letters)
Database: ddbj_A
108,600,042 sequences; 106,710,029,556 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value N
(BJ422360) Dictyostelium discoideum cDNA clone:ddv45m16, 5' ... 1201 0.0 1
(BJ441100) Dictyostelium discoideum cDNA clone:ddv45m16, 3' ... 846 0.0 2
(BH156310) ENTSB23TR Entamoeba histolytica Sheared DNA Entam... 42 2e-05 3
(CP001056) Clostridium botulinum B str. Eklund 17B, complete... 36 2e-04 20
(DL267631) METHODS FOR ANALYZING GENES OF INDUSTRIAL YEASTS. 58 8e-04 1
(DJ134080) Method for identification of useful proteins deri... 58 8e-04 1
(HB146346) Sequence 4700 from Patent WO2006024951. 58 8e-04 1
(HA142999) Sequence 4700 from Patent WO2006024892. 58 8e-04 1
(AZ671663) ENTJM03TF Entamoeba histolytica Sheared DNA Entam... 40 0.004 3
(CR762487) Zebrafish DNA sequence from clone CH211-197G14 in... 42 0.005 7
(CT027663) Medicago truncatula chromosome 5 clone mth2-139g2... 40 0.006 8
(CP001605) Candidiatus Sulcia muelleri SMDSEM, complete genome. 34 0.014 12
(CP001205) Borrelia burgdorferi ZS7, complete genome. 42 0.025 14
(AE000783) Borrelia burgdorferi B31, complete genome. 42 0.026 14
(CP001184) Ureaplasma urealyticum serovar 10 str. ATCC 33699... 32 0.075 19
(AY360136) Dictyostelium discoideum putative G protein-coupl... 38 0.12 3
(CX161293) 88339.1 Mixed Floral Solanum tuberosum cDNA clone... 36 0.17 3
(AR546817) Sequence 1948 from patent US 6747137. 50 0.20 1
(ES631893) NGPTT58TR NGPP Nasonia giraulti cDNA, mRNA sequence. 50 0.20 1
(CT025922) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 34 0.24 10
(CT574573) Zebrafish DNA sequence from clone CH211-241E20 in... 40 0.30 6
(AE017308) Mycoplasma mobile 163K complete genome. 34 0.30 18
(AC188401) Gossypium hirsutum chromosome UNKNOWN clone ZMMBB... 36 0.35 8
(AC226729) Solanum lycopersicum chromosome 6 clone C06SLe007... 34 0.42 6
(CS592332) Sequence 26 from Patent WO2007039128. 38 0.49 2
(DM023045) METHODS AND NUCLEIC ACIDS FOR THE ANALYSIS OF GEN... 38 0.49 2
(DJ061103) Method and nucleic acids for the improved treatme... 38 0.49 2
(DD214735) PROGNOSTIC MARKERS FOR PREDICTION OF TREATMENT RE... 38 0.49 2
(DD214552) PROGNOSTIC MARKERS FOR PREDICTION OF TREATMENT RE... 38 0.49 2
(CS624413) Sequence 964 from Patent WO2006071466. 38 0.49 2
(CS249063) Sequence 155 from Patent WO2005121360. 38 0.49 2
(CS138459) Sequence 155 from Patent EP1561821. 38 0.49 2
(CS125450) Sequence 1136 from Patent WO2005059172. 38 0.49 2
(GM739504) Sequence 24 from Patent WO2007039291. 38 0.49 2
(GM043742) Sequence 4 from Patent WO2007039290. 38 0.49 2
(GM043516) Sequence 155 from Patent WO2006133866. 38 0.49 2
(CS592338) Sequence 32 from Patent WO2007039128. 38 0.51 2
(AL352977) Human chromosome 14 DNA sequence BAC R-662J14 of ... 32 0.61 8
(AP006186) Oryza sativa Japonica Group genomic DNA, chromoso... 48 0.80 1
(AP005187) Oryza sativa Japonica Group genomic DNA, chromoso... 48 0.80 1
(AP004673) Oryza sativa Japonica Group genomic DNA, chromoso... 48 0.80 1
(AL844509) Plasmodium falciparum 3D7 chromosome 13. 48 0.80 1
(AC231176) Bos taurus clone CH240-87P6, WORKING DRAFT SEQUEN... 48 0.80 1
(AC224366) Bos taurus clone CH240-486L5, WORKING DRAFT SEQUE... 48 0.80 1
(AC167002) Bos taurus clone CH240-196D19, WORKING DRAFT SEQU... 48 0.80 1
(DU740517) APKI5751.b2 HF70_10-07-02 uncultured marine micro... 48 0.80 1
(CL971861) OsIFCC022330 Oryza sativa Express Library Oryza s... 48 0.80 1
(BZ858719) CH240_245H23.TV CHORI-240 Bos taurus genomic clon... 48 0.80 1
(EW881102) G894P547RC10.T0 Ixodes scapularis Pooled Non-infe... 48 0.80 1
(EW878809) G894P543RO3.T0 Ixodes scapularis Pooled Non-infec... 48 0.80 1
(EW851935) G894P5115RB22.T0 Ixodes scapularis Pooled Non-inf... 48 0.80 1
(EW840011) G894P593RP1.T0 Ixodes scapularis Pooled Non-infec... 48 0.80 1
(EW833043) G894P586RL19.T0 Ixodes scapularis Pooled Non-infe... 48 0.80 1
(EW803615) G893P562RJ8.T0 Ixodes scapularis Pooled Non-infec... 48 0.80 1
(EW803614) G893P562FJ8.T0 Ixodes scapularis Pooled Non-infec... 48 0.80 1
(AC179608) Strongylocentrotus purpuratus clone R3-1028N09, W... 44 0.82 6
(BJ386159) Dictyostelium discoideum cDNA clone:ddc57h07, 3' ... 44 0.84 2
(AE017245) Mycoplasma synoviae 53, complete genome. 36 0.94 17
(EI500164) PV_GBa0119M10.r PV_GBa Phaseolus vulgaris genomic... 36 1.1 3
(CU210940) Zebrafish DNA sequence from clone CH73-105F15 in ... 42 1.2 4
(AC235626) Solanum tuberosum strain Diploid genotype RH89-03... 42 1.2 4
(AY232270) Dictyostelium discoideum putative protein Roco8 (... 36 1.5 4
(AC209002) Populus trichocarpa clone POP040-E22, complete se... 36 1.5 7
(EH226366) JGI_ACAC3536.fwd ACAC Phakopsora pachyrhizi TW72-... 36 1.5 3
(EH226288) JGI_ACAC3451.fwd ACAC Phakopsora pachyrhizi TW72-... 36 1.5 3
(EH226145) JGI_ACAC3451.rev ACAC Phakopsora pachyrhizi TW72-... 36 1.6 3
(AP001683) Homo sapiens genomic DNA, chromosome 21q, section... 38 1.6 9
(CU467592) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 34 1.6 2
(CP000013) Borrelia garinii PBi, complete genome. 36 1.6 18
(CP000395) Borrelia afzelii PKo, complete genome. 36 1.6 18
(AC187794) Gossypium hirsutum chromosome UNKNOWN clone ZMMBB... 32 1.7 8
(AP000472) Homo sapiens genomic DNA, chromosome 21q21.1-q21.... 38 1.8 6
(AC165063) Phakopsora pachyrhizi clone JGIAFNA-2137K11, comp... 36 1.8 2
(AC198886) Zea mays chromosome 8 clone ZMMBBb-139I22; ZMMBBb... 40 1.8 2
(BX005075) Zebrafish DNA sequence from clone CH211-112P11 in... 36 1.9 9
(AC178456) Strongylocentrotus purpuratus clone R3-3039L17, W... 40 1.9 5
(CU367882) H.melpomene DNA sequence from clone AEHM-11J7. 32 2.0 8
(AY573075) Delphinia picta 12S ribosomal RNA gene, partial s... 32 2.2 2
(EH230072) JGI_ACAC5580.rev ACAC Phakopsora pachyrhizi TW72-... 36 2.2 2
(EH230013) JGI_ACAC5709.rev ACAC Phakopsora pachyrhizi TW72-... 36 2.2 2
(DE412015) Bombyx mori genomic DNA, BAC clone:12F5D. 36 2.4 2
(FJ546412) Syntrichia ruralis chloroplast, complete genome. 34 2.4 8
(CU928681) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 40 2.5 7
(EC761607) PSE00006848 rw_mgpallid Polysphondylium pallidum ... 34 2.7 3
(AC021350) Homo sapiens clone RP11-24M18, WORKING DRAFT SEQU... 44 2.7 3
(BV500665) S222P62388RB5.T0 Karlien Pan troglodytes verus ST... 42 2.8 2
(CP000123) Mycoplasma capricolum subsp. capricolum ATCC 2734... 34 2.9 20
(EK452781) 1095467600360 Global-Ocean-Sampling_GS-32-01-01-1... 44 3.0 2
(EI359613) GM_WBc0112H04.f GM_WBc Glycine max genomic clone ... 44 3.0 2
(AJ747709) Sus scrofa EST from subtracted macrophage librari... 34 3.1 3
(CR380959) Candida glabrata strain CBS138 chromosome M compl... 46 3.2 1
(U80440) Caenorhabditis elegans cosmid T21E12, complete sequ... 46 3.2 1
(L33260) Caenorhabditis elegans dynein heavy chain gene exon... 46 3.2 1
(EU130462) Tetranychus cinnabarinus esterase TCE2 mRNA, comp... 46 3.2 1
(AY790343) Tetranychus cinnabarinus esterase mRNA, partial cds. 46 3.2 1
(AY790342) Tetranychus cinnabarinus esterase mRNA, partial cds. 46 3.2 1
(AC160589) Papio anubis clone RP41-354O23, WORKING DRAFT SEQ... 46 3.2 1
(AC203233) Zea mays chromosome 2 clone CH201-9M4; ZMMBBc0009... 46 3.2 1
(AC165562) Bos taurus clone CH240-173A3, WORKING DRAFT SEQUE... 46 3.2 1
(ER343491) 1092344363743 Global-Ocean-Sampling_GS-34-01-01-1... 46 3.2 1
(EK010619) 1092955170891 Global-Ocean-Sampling_GS-31-01-01-1... 46 3.2 1
(EK008822) 1092955139019 Global-Ocean-Sampling_GS-31-01-01-1... 46 3.2 1
(EJ590911) 1092961050036 Global-Ocean-Sampling_GS-29-01-01-1... 46 3.2 1
(EJ546697) 1092957817863 Global-Ocean-Sampling_GS-29-01-01-1... 46 3.2 1
(ED461863) AUAC-aar91h07.b1 Ascaris suum whole genome shotgu... 46 3.2 1
(BB768426) Mus musculus B16 F10Y cells cDNA, RIKEN full-leng... 46 3.2 1
(BB228343) Mus musculus 3 days neonate thymus cDNA, RIKEN fu... 46 3.2 1
(BB216948) Mus musculus adult male aorta and vein cDNA, RIKE... 46 3.2 1
(BB161294) Mus musculus 16 days neonate thymus cDNA, RIKEN f... 46 3.2 1
(AM486900) Vitis vinifera contig VV78X153020.6, whole genome... 40 3.2 3
(FM992692) Candida dubliniensis CD36 chromosome 5, complete ... 44 3.2 8
(BV464853) G591P68478FC8.T0 Clint Pan troglodytes verus STS ... 42 3.3 2
(AM285320) Spiroplasma citri GII3-3X chromosome, contig Cont... 36 3.4 7
(CW942288) TcB23.4_A11_SP6 Tribolium BAC library Tribolium c... 36 3.4 2
(AM652799) Entamoeba moshkovskii FIC GSS, clone mosh122f06.p1k. 42 3.6 2
(CP001519) Borrelia sp. SV1 plasmid SV1_lp17, complete seque... 38 3.6 4
(AJ747721) Sus scrofa EST from subtracted macrophage librari... 34 3.6 3
(EW530747) rret17_a24.y1 ret Sus scrofa cDNA 5', mRNA sequence. 34 3.8 3
(AC180700) Strongylocentrotus purpuratus clone R3-3087G09, W... 34 3.8 8
(AC195285) Gallus gallus chromosome 4 clone CH261-66G19, ***... 38 3.8 7
(AJ954270) Sus scrofa EST, clone C0007737j19, 5' direction. 34 4.0 3
(FN357506) Schistosoma mansoni genome sequence supercontig S... 36 4.1 12
(AC013727) Homo sapiens BAC clone RP11-451G1 from 2, complet... 36 4.2 8
(CB478707) jns40_A04.f jns Sus scrofa cDNA 5', mRNA sequence. 34 4.2 3
(FI999376) CH302-0015F06.F CHORI302 Branchiostoma floridae g... 36 4.3 2
(AC178073) Strongylocentrotus purpuratus clone R3-3059I07, W... 36 4.3 8
(AJ952976) Sus scrofa EST, clone C0007737j19, 3' direction. 34 4.3 3
(EW534437) rret15_b24.y1 ret Sus scrofa cDNA 5', mRNA sequence. 34 4.3 3
(AC068959) Homo sapiens clone RP11-12O10, WORKING DRAFT SEQU... 34 4.3 6
(L14429) Caenorhabditis elegans cosmid ZK652, complete seque... 34 4.5 4
(AC027671) Homo sapiens chromosome 10 clone RP11-183F21, com... 44 4.8 5
(BX640454) Zebrafish DNA sequence from clone CH211-1A19 in l... 38 4.8 6
(CW982852) KBrH008A04F KBrH, Brassica rapa HindIII BAC libra... 32 4.8 3
(AC025186) Homo sapiens chromosome 5 clone CTD-2375G15, comp... 40 5.0 7
(CR318608) Zebrafish DNA sequence from clone CH211-250G5 in ... 38 5.3 9
(DJ358595) METHODS AND NUCLEIC ACIDS FOR THE ANALYSIS OF GEN... 36 5.3 3
(CS114314) Sequence 1072 from Patent WO2005054517. 36 5.3 3
(AM468464) Vitis vinifera contig VV78X019304.12, whole genom... 42 5.4 2
(BX663508) Zebrafish DNA sequence from clone CH211-144B6 in ... 40 5.4 6
(CV113972) AGENCOURT_31573497 NIH_ZGC_15 Danio rerio cDNA cl... 38 5.5 3
(BX537348) Zebrafish DNA sequence from clone CH211-218O21 in... 34 5.6 9
(AC005341) Homo sapiens chromosome , clone RP11-146P2, compl... 40 5.7 5
(BA000026) Mycoplasma penetrans HF-2 DNA, complete genome. 42 5.8 17
(AC121276) Mus musculus chromosome 1, clone RP24-249B16, com... 32 5.9 2
(AC115912) Mus musculus chromosome 1 clone RP24-481P14 map 1... 32 5.9 2
(AC017006) Homo sapiens BAC clone RP11-110G2 from 2, complet... 34 5.9 2
(AL022603) Arabidopsis thaliana DNA chromosome 4, BAC clone ... 32 6.2 7
(DY890362) CeleSEQ9343 Cunninghamella elegans pBluescript (E... 30 6.5 3
(AC168707) Strongylocentrotus purpuratus clone R3-3011K17, W... 42 6.6 6
(CP001461) Borrelia burgdorferi WI91-23 plasmid WI91-23_lp17... 38 6.7 3
(CS374560) Sequence 663 from Patent WO2006034879. 32 6.9 4
(DY894009) CeleSEQ13487 Cunninghamella elegans pBluescript (... 30 6.9 3
(AC234695) Solanum lycopersicum chromosome 9 clone C09HBa017... 32 7.7 10
(AK057154) Homo sapiens cDNA FLJ32592 fis, clone SPLEN2000464. 40 7.8 2
(EJ232016) 1092404024865 Global-Ocean-Sampling_GS-27-01-01-1... 34 8.0 2
(ER538134) 1093015882808 Global-Ocean-Sampling_GS-35-01-01-1... 34 8.0 2
(AC123513) Dictyostelium discoideum strain AX4 chromosome 2 ... 34 8.2 5
(BI175578) OSTR049F4_1 AD-wrmcDNA Caenorhabditis elegans cDN... 32 8.2 2
(BI175569) OSTR049A2_1 AD-wrmcDNA Caenorhabditis elegans cDN... 32 8.2 2
(AM477140) Vitis vinifera, whole genome shotgun sequence, co... 32 8.6 5
(CP001258) Borrelia burgdorferi 156a plasmid 156a_lp17, comp... 38 8.6 3
(AC011663) Arabidopsis thaliana chromosome 1 BAC F5A18 genom... 34 8.9 6
(AC159216) Pan troglodytes BAC clone CH251-477A18 from chrom... 44 9.0 4
(CU463321) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 42 9.2 2
(FM992691) Candida dubliniensis CD36 chromosome 4, complete ... 34 9.3 9
(GR579350) CBZY2001.g1 CBZY Dictyostelium purpureum 18 hr st... 42 9.3 2
(DE075497) Oryzias latipes DNA, clone: ola1-178M06.F, genomi... 38 9.3 2
(FI318013) AdH1170-CPY2-G13TR AdH1 Arachis duranensis genomi... 40 9.3 2
(AP001042) Homo sapiens genomic DNA, chromosome 21, clone:Q1... 44 9.4 3
(AC111572) Rattus norvegicus clone CH230-64G14, WORKING DRAF... 38 9.5 5
(GD081527) KS17064F08 KS17 Capsicum annuum cDNA, mRNA sequence. 42 9.5 2
(AP009661) Lotus japonicus genomic DNA, chromosome 1, clone:... 34 9.6 6
(AP009180) Candidatus Carsonella ruddii PV DNA, complete gen... 32 9.8 9
(AC200678) Pongo abelii BAC clone CH276-223F4 from chromosom... 44 9.8 4
(AC216148) Cavia porcellus clone CH234-57K11, WORKING DRAFT ... 44 10.0 8
>(BJ422360) Dictyostelium discoideum cDNA clone:ddv45m16, 5' end,
single read.
Length = 606
Score = 1201 bits (606), Expect = 0.0
Identities = 606/606 (100%)
Strand = Plus / Plus
Query: 1 agaggatgaacttgaagagattctttgtaaacgttgcgcattaccaccatcctattgcaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 agaggatgaacttgaagagattctttgtaaacgttgcgcattaccaccatcctattgcaa 60
Query: 61 gaaattagtattaattatgaaagaacttcaattgaatagacaaggtagtaaccaagtttt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gaaattagtattaattatgaaagaacttcaattgaatagacaaggtagtaaccaagtttt 120
Query: 121 cgcaggtaaacatggtgcaatcacattccgtgatttgttccgttgggcagaacgtcaacc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 cgcaggtaaacatggtgcaatcacattccgtgatttgttccgttgggcagaacgtcaacc 180
Query: 181 ttcatcctatgaagaattgggtattgcaggttaccaactcttggctgaacgtttaagaaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ttcatcctatgaagaattgggtattgcaggttaccaactcttggctgaacgtttaagaaa 240
Query: 241 agatgaagagaaattaataattaaacaagtgattgaaaaacatttaaagattaaattaga 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 agatgaagagaaattaataattaaacaagtgattgaaaaacatttaaagattaaattaga 300
Query: 301 tatcgaatctatctattcatgtgatgataaaccagagtttttaaaacttttacaattatt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 tatcgaatctatctattcatgtgatgataaaccagagtttttaaaacttttacaattatt 360
Query: 361 aagtgagaatgattcagaattatcaaaatcaaatcatttagagaaaatcgtttggacaag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 aagtgagaatgattcagaattatcaaaatcaaatcatttagagaaaatcgtttggacaag 420
Query: 421 atcaatgaaacgtttgtttagtttggttggtaaatgtttggaacataaagaaccaatttt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 atcaatgaaacgtttgtttagtttggttggtaaatgtttggaacataaagaaccaatttt 480
Query: 481 attagttggtgaaactggttgttctaaaactacaatttgtcaattatattcaattttaaa 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 attagttggtgaaactggttgttctaaaactacaatttgtcaattatattcaattttaaa 540
Query: 541 taaacaaaaacttcatatactcaattgtcatcaacatactgaaactgctgatttcattgg 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 taaacaaaaacttcatatactcaattgtcatcaacatactgaaactgctgatttcattgg 600
Query: 601 tggttt 606
||||||
Sbjct: 601 tggttt 606
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Number of Sequences: 108600042
Number of Hits to DB: 1,598,775,735
Number of extensions: 103639019
Number of successful extensions: 10644782
Number of sequences better than 10.0: 175
Length of query: 1160
Length of database: 106,710,029,556
Length adjustment: 24
Effective length of query: 1136
Effective length of database: 104,103,628,548
Effective search space: 118261722030528
Effective search space used: 118261722030528
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
Dictyostelium discoideum cDNA Project Home