<Clone: Contig-U12479-1> <SEQ> <Translated> <CONTIG> <DNA> <Protein> <PSORT> <MOTIF>

Dictyostelium discoideum cDNA Contig-U12479-1

Dictyostelium discoideum cDNA Project Home

Assembled

Chromosomal Location of Contig-U12479-1

< more Chromosomal info >

Chromosome Number 5
Length 5062330
Start Poin 2,042,800
End Point 2,041,578
Strand MINUS

Sequence Contig-U12479-1

AAAAAAATCA TAATCTCTGA AAGTGATGAC GAATTATTGT TACAAACTGT
AAATAAAAAA TCAACAACTA AAGAAAAAAC TTCAAAACCA ACAACAACGA
CAACAACGAC AACAACAAAA ACAACAACTA AAGATGATAC AACTGACACC
GAGGAGGAAT ACTCAGAAGA GGATATTAAA CCAATAAAAA AACCAGTTTC
AAAGGTAACC AAAAAACAAA TTCAAGAAAG TGAAGGTTCA GAGGAGGAGA
TAAGTGATTC TGAAGAAGAT ATTAAACAAG AAGAAGAAAA ATCAGAGTCT
TCTGAAGAAG ATATTAAACC AAAAAGATTA ACTAGATTAA GAAAACCAAT
AACAACAACC TTAAATACTA CAACTAAAAA GAAACCAACA TTAATTTTAT
CAGAGTCTGA AGGAGAGGAA GAATCCGATG GTTCAATTTA TCAAGAAGAA
TCTGATGATT ACCAAGAAGA AGAAGAAGAA GAAGAAGAGG AAGAAGAAGA
AGAGGAAGAA GAAGAAGAAG AAAATATTGA TCCAAGCAAA ATGGTTGATC
AATTGAATGG TTTTTTAAAG TATAAAGAGA AATCAATATA TATAAATTCA
ACAAAATCTA AAGAAGGTAA ATATTTTAA- ---------- ---------N
NNNNNNNNAC AATGTCACCA GCTCCTAAAC CAACTAAAAC TTTATTAAAA
GATGTTGGGT TAGGTTCAAA GAGAAAAGGA AATGAACCAA TTGAAATTTT
AGATGATGGG AATAATAGTC ATTATCAATA TAATCAAAAA CAACAATCAA
TCGCTATTGA TTTGGATGAT AGTTTTGACA GTAATATCAA ATCACCTTCT
AAATTTAATA GTAGTGTTAA TAATAGTGTT AATAATTCAA TTGTTATTGA
TCTTGATAGT GATGAAGAAA AAGAAAATCA AGATTTCAAT CAATCATCTG
TTTTATCAAC AACAACAGCA AGTACTCCAT CAATGCCTAA TATTCAAAAA
GCAACCGAGA TTAGAGGTAA TAAAGATGAT TCATTAGAAA CTATTCGTAA
ACAAAAAAAT TTCAATTTTT TGGTTAATCG TGCCAAAGAA TCTGAATTAA
AAGGTAATAA AACAGAATCA TTACATTATA TTTTAGATGC TGAAGAATTT
GCAAGAAATA ATAATTTGAG TGAAGCACTC ATTCAAAATG ATGAAGTATT
TAAACATTTA GTAAAAAGAA AGTTTAAAGA AATGTTCCAC CTCCAAACT

Translated Amino Acid Sequence Contig-U12479-1

<All Frames> 
KKIIISESDDELLLQTVNKKSTTKEKTSKPTTTTTTTTTKTTTKDDTTDTEEEYSEEDIK
PIKKPVSKVTKKQIQESEGSEEEISDSEEDIKQEEEKSESSEEDIKPKRLTRLRKPITTT
LNTTTKKKPTLILSESEGEEESDGSIYQEESDDYQEEEEEEEEEEEEEEEEEEENIDPSK
MVDQLNGFLKYKEKSIYINSTKSKEGKYFXXX---

---XXXTMSPAPKPTKTLLKDVGLGSKRKGNEPIEILDDGNNSHYQYNQKQQSIAIDLDD
SFDSNIKSPSKFNSSVNNSVNNSIVIDLDSDEEKENQDFNQSSVLSTTTASTPSMPNIQK
ATEIRGNKDDSLETIRKQKNFNFLVNRAKESELKGNKTESLHYILDAEEFARNNNLSEAL
IQNDEVFKHLVKRKFKEMFHLQT


Homology Contig-U12479-1 vs CSM-Contig

<more CONTIG info> 
Sequences producing significant alignments:                        (bits)  Value


Contig-U12479-1 (Contig-U12479-1Q) /CSM_Contig/Conti...  1130  0.0
Contig-U14675-1 (Contig-U14675-1Q) /CSM_Contig/Conti...    40  0.006
Contig-U13554-1 (Contig-U13554-1Q) /CSM_Contig/Conti...    40  0.006
Contig-U11110-1 (Contig-U11110-1Q) /CSM_Contig/Conti...    40  0.006
Contig-U10317-1 (Contig-U10317-1Q) /CSM_Contig/Conti...    40  0.006
Contig-U12643-1 (Contig-U12643-1Q) /CSM_Contig/Conti...    38  0.022
Contig-U11327-1 (Contig-U11327-1Q) /CSM_Contig/Conti...    38  0.022
Contig-U06832-1 (Contig-U06832-1Q) /CSM_Contig/Conti...    38  0.022
Contig-U05994-1 (Contig-U05994-1Q) /CSM_Contig/Conti...    38  0.022
Contig-U14670-1 (Contig-U14670-1Q) /CSM_Contig/Conti...    36  0.088


Homology Contig-U12479-1 vs DNA

<more DNA info> 
Sequences producing significant alignments:                  (bits) Value  N


(BJ440937) Dictyostelium discoideum cDNA clone:ddv45m06, 3' ...   781   0.0    2
(BJ422197) Dictyostelium discoideum cDNA clone:ddv45m06, 5' ...   537   0.0    4
(CP001184) Ureaplasma urealyticum serovar 10 str. ATCC 33699...    48   1e-04  21
(CP000061) Aster yellows witches'-broom phytoplasma AYWB, co...    46   0.015  18
(CP000942) Ureaplasma parvum serovar 3 str. ATCC 27815, comp...    34   0.079  18
(AF222894) Ureaplasma parvum serovar 3 str. ATCC 700970, com...    34   0.079  18
(FM992694) Candida dubliniensis CD36 chromosome 7, complete ...    36   0.11   21
(BA000026) Mycoplasma penetrans HF-2 DNA, complete genome.         36   0.14   22
(GS231644) DB075G01.R Brachypodium distachyon Bd21 BamH1 BAC...    44   0.15   3
(BX323078) Zebrafish DNA sequence from clone DKEYP-55A5 in l...    36   0.16   10


Homology Contig-U12479-1 vs Protein

<more Protein info> 
Sequences producing significant alignments:                      (bits) Value


AE014188_93(AE014188|pid:none) Plasmodium falciparum 3D7 chromos...    37   1.9
CR940347_247(CR940347|pid:none) Theileria annulata strain Ankara...    37   1.9
AE014187_702(AE014187|pid:none) Plasmodium falciparum 3D7 chromo...    36   2.5
AL844509_552(AL844509|pid:none) Plasmodium falciparum 3D7 chromo...    35   4.3
AE014187_529(AE014187|pid:none) Plasmodium falciparum 3D7 chromo...    35   5.6
DQ008305_1(DQ008305|pid:none) Staphylococcus simulans biofilm-as...    35   5.6
AL844505_191(AL844505|pid:none) Plasmodium falciparum 3D7 chromo...    35   7.3
BC079988_1(BC079988|pid:none) Xenopus laevis MGC81626 protein, m...    34   9.6


<Clone: Contig-U12479-1> <SEQ> <Translated> <CONTIG> <DNA> <Protein> <PSORT> <MOTIF>

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