Dictyostelium discoideum cDNA Contig-U12328-1

Assembled

Chromosomal Location of Contig-U12328-1

Sequence Contig-U12328-1

ATTTTCATTT TTTTAGTTTT TTTTATTTAT TTATTTAAAA CGAACGAATT
ATTTTGTTTA ATAATAGTAA TAATAAAAAT GTCACTTTTA TTCACAGATT
CTTCAATTCA AGATACAGAA ACAGAATTAA CTCACCTTGT TTTTCAATGG
TTAGAAGAAA GAGGATTCAC AGAGTCAATT AGATCTTTAG AATCTGAAAC
TCAAATTACA CATAATAAAC AAACTGTTAA ACTTGGTGGC CAATTAGAAT
TTATTTATAA TGAACATAAA GAATTACAAG AATCAATGAA AACTATTGAA
TCAATAGAAG ATGAAGATAC TGAAATTGGA ATTCTTGGTG ATGGTAAAAT
TCATAAACAT TTAAATGATG TTTTAGATAA TGTTCATAGT TCAAATATTT
TATGTCTTAG ATTTAGTCCA ATTAAAGATA GTAATATTAT AGTTACAGGT
TCAACTGATA AAACATTAAA AATTACAAAT TATCTAACAA AAGAAGTTTT
AAATTCATAT ACTGGTTTTG CTTCTGCACC ATTCATTTCA TTAGATTTTA
ATCCAGTAAA TCCTGAATTA TTATTAGCAT CATCAGTTGA TGGTAGTCAT
TGT------- ---ACATAAG AAATATGTTG TTAGAGTTAG ATGGAGTCCA
GATGGTAAGA TGTTTGCATC ATGTTCATAC GATAAATCAA TATCATTATT
TAAAGAGGAT GAATCAAATC AAGGTCAATT TGAGTTTGTA AAGAGTTGGG
ATTTCGTAAC AACAGTTGAA TCATTAATAT TCACACCAGA TTCAAAGTAT
GTGATTGCAG CAGTTAAAGA ATCAAATTAT TTTCATTATT TAGAAACCGA
GGGTGATTTC TCAATTGAAC GTTATAATAT GAATGTGAAT GGTGATGATC
ATGTCAGTTT CTCTGCAATG GAATTCTCAA TTACACCAGA TAAAAAATAC
CTTTTAGTTT CAACTGATCT CAATCGTTTG ATTCTCTTTA AATTGAATTC
AAATAAACAA ATTCGTAATT TTTATGGAGC TTTCAATGAT TCCTATACAA
CCACTAGAAA TGCAATTTGT CCATCTGGTA AATACGTATT TTCAACTTCT
CAAGATAACT TAATCTATGT TTGGGAAATT GCAAATCAAA AAGTTATCGC
AAAATTAGAT TCTCATCGTT CCTCAGTTCG TGAACTCACT TTTTCACCTG
ATAACCTTTT ATTAGCTTCT TGTGGTTTCG ATAAAAGAGT CACTCTTTGG
TCAAATATTT CTGATTAAAA ATAAAAAAAA AAACAATAAA TTAAAACAAC
ATTTTTTTAA AAAAAAAAAA AAAAAA

Translated Amino Acid Sequence Contig-U12328-1

IFIFLVFFIYLFKTNELFCLIIVIIKMSLLFTDSSIQDTETELTHLVFQWLEERGFTESI
RSLESETQITHNKQTVKLGGQLEFIYNEHKELQESMKTIESIEDEDTEIGILGDGKIHKH
LNDVLDNVHSSNILCLRFSPIKDSNIIVTGSTDKTLKITNYLTKEVLNSYTGFASAPFIS
LDFNPVNPELLLASSVDGSHC---

---HKKYVVRVRWSPDGKMFASCSYDKSISLFKEDESNQGQFEFVKSWDFVTTVESLIFT
PDSKYVIAAVKESNYFHYLETEGDFSIERYNMNVNGDDHVSFSAMEFSITPDKKYLLVST
DLNRLILFKLNSNKQIRNFYGAFNDSYTTTRNAICPSGKYVFSTSQDNLIYVWEIANQKV
IAKLDSHRSSVRELTFSPDNLLLASCGFDKRVTLWSNISD*k*kkkq*ikttff*kkkkk

Homology Contig-U12328-1 vs CSM-Contig

Sequences producing significant alignments:                        (bits)  Value


Contig-U12328-1 (Contig-U12328-1Q) /CSM_Contig/Conti...  2379  0.0
Contig-U12722-1 (Contig-U12722-1Q) /CSM_Contig/Conti...    46  1e-04
Contig-U05231-1 (Contig-U05231-1Q) /CSM_Contig/Conti...    46  1e-04
Contig-U11510-1 (Contig-U11510-1Q) /CSM_Contig/Conti...    44  4e-04
Contig-U14509-1 (Contig-U14509-1Q) /CSM_Contig/Conti...    42  0.002
Contig-U12695-1 (Contig-U12695-1Q) /CSM_Contig/Conti...    42  0.002
Contig-U02846-1 (Contig-U02846-1Q) /CSM_Contig/Conti...    42  0.002
Contig-U12540-1 (Contig-U12540-1Q) /CSM_Contig/Conti...    40  0.006
Contig-U12482-1 (Contig-U12482-1Q) /CSM_Contig/Conti...    40  0.006
Contig-U12214-1 (Contig-U12214-1Q) /CSM_Contig/Conti...    40  0.006

Homology Contig-U12328-1 vs DNA

Sequences producing significant alignments:                  (bits) Value  N


(AU264631) Dictyostelium discoideum vegetative cDNA clone:VS...  1057   0.0    1
(BJ363540) Dictyostelium discoideum cDNA clone:ddc27o05, 5' ...  1037   0.0    1
(AU264632) Dictyostelium discoideum vegetative cDNA clone:VS...  1019   0.0    2
(BJ432392) Dictyostelium discoideum cDNA clone:ddv18f14, 3' ...   932   0.0    2
(BJ414257) Dictyostelium discoideum cDNA clone:ddv18f14, 5' ...   924   0.0    1
(C90610) Dictyostelium discoideum slug cDNA, clone SSI842.        585   e-162  1
(AU073449) Dictyostelium discoideum slug cDNA, clone SSH237.      476   e-129  1
(AU073448) Dictyostelium discoideum slug cDNA, clone SSH236.      375   3e-99  1
(AU074833) Dictyostelium discoideum slug cDNA, clone SSM202.      317   6e-82  1
(AC174554) Strongylocentrotus purpuratus clone R3-1008C22, W...    50   0.23   1

Homology Contig-U12328-1 vs Protein

Sequences producing significant alignments:                      (bits) Value


CP001291_1144(CP001291|pid:none) Cyanothece sp. PCC 7424, comple...    82   2e-18
CP001037_1143(CP001037|pid:none) Nostoc punctiforme PCC 73102, c...    92   3e-17
CP000099_2768(CP000099|pid:none) Methanosarcina barkeri str. Fus...    82   3e-14
AP009552_3821(AP009552|pid:none) Microcystis aeruginosa NIES-843...    82   6e-14
CP001291_5177(CP001291|pid:none) Cyanothece sp. PCC 7424, comple...    81   7e-14
AM778957_201(AM778957|pid:none) Microcystis aeruginosa PCC 7806 ...    80   1e-13
CP000393_4067(CP000393|pid:none) Trichodesmium erythraeum IMS101...    80   2e-13
CP000117_1553(CP000117|pid:none) Anabaena variabilis ATCC 29413,...    80   2e-13
CP000828_5861(CP000828|pid:none) Acaryochloris marina MBIC11017,...    60   3e-13
CP000393_2151(CP000393|pid:none) Trichodesmium erythraeum IMS101...    77   1e-12