Homology Contig-U12328-1 vs DNA
Query= Contig-U12328-1 (Contig-U12328-1Q) /CSM_Contig/Contig-U12328-1Q.Seq.d
(1326 letters)
Database: ddbj_A
108,600,042 sequences; 106,710,029,556 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value N
(AU264631) Dictyostelium discoideum vegetative cDNA clone:VS... 1057 0.0 1
(BJ363540) Dictyostelium discoideum cDNA clone:ddc27o05, 5' ... 1037 0.0 1
(AU264632) Dictyostelium discoideum vegetative cDNA clone:VS... 1019 0.0 2
(BJ432392) Dictyostelium discoideum cDNA clone:ddv18f14, 3' ... 932 0.0 2
(BJ414257) Dictyostelium discoideum cDNA clone:ddv18f14, 5' ... 924 0.0 1
(C90610) Dictyostelium discoideum slug cDNA, clone SSI842. 585 e-162 1
(AU073449) Dictyostelium discoideum slug cDNA, clone SSH237. 476 e-129 1
(AU073448) Dictyostelium discoideum slug cDNA, clone SSH236. 375 3e-99 1
(AU074833) Dictyostelium discoideum slug cDNA, clone SSM202. 317 6e-82 1
(AC174554) Strongylocentrotus purpuratus clone R3-1008C22, W... 50 0.23 1
(ET097500) QM0AAB11BC09FM1 CCER1 Citrus clementina genomic c... 44 0.32 2
(DH457200) Macropus eugenii DNA with T3 primer, fosmid clone... 36 0.66 2
(FG915097) UCRVU08_CCNS9695_g1 Cowpea IT97K-461-4 Mixed Tiss... 44 0.89 2
(CT009539) Mouse DNA sequence from clone RP23-10G6 on chromo... 40 1.2 5
(DU761635) ASNG3800.b2 HF200_10-06-02 uncultured marine micr... 44 1.3 2
(CT571253) Mouse DNA sequence *** SEQUENCING CANCELLED *** f... 40 1.8 5
(EK502734) 1095505927376 Global-Ocean-Sampling_GS-32-01-01-1... 34 2.2 3
(FP312785) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 34 2.4 7
(FP326716) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 42 2.8 2
(EJ357163) 1092963656701 Global-Ocean-Sampling_GS-28-01-01-1... 36 3.4 2
(DQ832718) Phytophthora ramorum mitochondrion, complete genome. 38 3.6 5
(AL353623) Human DNA sequence from clone RP11-376H15 on chro... 46 3.6 1
(FP103071) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 46 3.6 1
(CU927936) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 46 3.6 1
(CU571374) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 46 3.6 1
(CU467543) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 46 3.6 1
(AC182274) Bos taurus clone CH240-488M15, WORKING DRAFT SEQU... 46 3.6 1
(FH296639) CHO_OF4224xj16f1.ab1 CHO_OF4 Nicotiana tabacum ge... 46 3.6 1
(EI407470) CFFL-409D02-F Chlamys farreri Fosmid Library Chla... 46 3.6 1
(DE949896) Macropus eugenii DNA, BAC clone: MEB1-147I07_F, 5... 46 3.6 1
(CZ550048) TA__Ba0093B23.f TA__Ba Tachyglossus aculeatus gen... 46 3.6 1
(CE171344) tigr-gss-dog-17000326663420 Dog Library Canis lup... 46 3.6 1
(DT804681) 127442087 TL1 Tribolium castaneum cDNA clone 110G... 46 3.6 1
(DT804289) 127442053 TL1 Tribolium castaneum cDNA clone 110C... 46 3.6 1
(DT799468) 126452231 TL1 Tribolium castaneum cDNA clone 67K7... 46 3.6 1
(DT799150) 126518939 TL1 Tribolium castaneum cDNA clone 59E3... 46 3.6 1
(DT798227) 126502388 TL1 Tribolium castaneum cDNA clone 62C1... 46 3.6 1
(DT797494) 126451540 TL1 Tribolium castaneum cDNA clone 79O3... 46 3.6 1
(DT797216) 127380512 TL1 Tribolium castaneum cDNA clone 82A2... 46 3.6 1
(DT796450) 127352337 TL1 Tribolium castaneum cDNA clone 95E5... 46 3.6 1
(DT794991) 127393986 TL1 Tribolium castaneum cDNA clone 99G1... 46 3.6 1
(DT770522) 125245233 TH1 Tribolium castaneum cDNA clone 61A9... 46 3.6 1
(DB529267) Homo sapiens hippocampus cDNA, RIKEN full-length ... 46 3.6 1
(ES544796) TB1003H11pTV TB1 Tribolium castaneum cDNA, mRNA s... 46 3.6 1
(CR936503) Lactobacillus sakei strain 23K complete genome. 46 3.6 1
(CP001581) Clostridium botulinum A2 str. Kyoto, complete gen... 46 3.6 1
(CP000939) Clostridium botulinum B1 str. Okra, complete genome. 46 3.6 1
(CP000728) Clostridium botulinum F str. Langeland, complete ... 46 3.6 1
(CP000727) Clostridium botulinum A str. Hall, complete genome. 46 3.6 1
(CP000726) Clostridium botulinum A str. ATCC 19397, complete... 46 3.6 1
(AM412317) Clostridium botulinum A str. ATCC 3502 complete g... 46 3.6 1
(EU427470) Phytophthora ramorum strain CBS 101553 mitochondr... 38 3.6 5
(BJ419312) Dictyostelium discoideum cDNA clone:ddv35p13, 5' ... 36 4.0 3
(GR572924) CBXU1087.g1 CBXU Dictyostelium purpureum 6 hr veg... 44 4.0 2
(AC160916) Rhinolophus ferrumequinum clone VMRC7-62G19, WORK... 36 4.5 6
(BJ336962) Dictyostelium discoideum cDNA clone:dda55d24, 5' ... 36 5.2 3
(BJ366740) Dictyostelium discoideum cDNA clone:ddc40h03, 5' ... 36 5.3 3
(CU927986) S.lycopersicum DNA sequence from clone LE_HBa-203... 36 5.5 6
(BJ418886) Dictyostelium discoideum cDNA clone:ddv34i10, 5' ... 36 5.5 3
(AC179896) Strongylocentrotus purpuratus clone R3-1003P23, W... 36 6.1 6
(AC177104) Strongylocentrotus purpuratus clone R3-4014A16, W... 36 6.6 5
(FJ429371) Carica papaya clone 90D06, complete sequence. 34 6.6 2
(AC195450) Glycine tomentella clone gtt1-310p22, complete se... 34 6.7 2
(AC154193) Mus musculus BAC clone RP24-398A6 from chromosome... 40 8.0 4
(AC141750) Apis mellifera clone CH224-59E19, WORKING DRAFT S... 38 8.0 5
(EA693196) Sequence 72075 from patent US 7365185. 36 8.4 3
(ED377368) AUAC-aax55g10.g1 Ascaris suum whole genome shotgu... 32 9.1 2
(AP009005) Bombyx mori genomic DNA, chromosome 21, BAC clone... 34 9.2 9
(CU896566) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 34 9.9 7
>(AU264631) Dictyostelium discoideum vegetative cDNA clone:VSD837, 5'
end single read.
Length = 552
Score = 1057 bits (533), Expect = 0.0
Identities = 536/537 (99%)
Strand = Plus / Plus
Query: 614 acataagaaatatgttgttagagttagatggagtccagatggtaagatgtttgcatcatg 673
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16 acataagaaatatgttgttagagttagatggagtccagatggtaagatgtttgcatcatg 75
Query: 674 ttcatacgataaatcaatatcattatttaaagaggatgaatcaaatcaaggtcaatttga 733
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 76 ttcatacgataaatcaatatcattatttaaagaggatgaatcaaatcaaggtcaatttga 135
Query: 734 gtttgtaaagagttgggatttcgtaacaacagttgaatcattaatattcacaccagattc 793
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 136 gtttgtaaagagttgggatttcgtaacaacagttgaatcattaatattcacaccagattc 195
Query: 794 aaagtatgtgattgcagcagttaaagaatcaaattattttcattatttagaaaccgaggg 853
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 196 aaagtatgtgattgcagcagttaaagaatcaaattatcttcattatttagaaaccgaggg 255
Query: 854 tgatttctcaattgaacgttataatatgaatgtgaatggtgatgatcatgtcagtttctc 913
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 tgatttctcaattgaacgttataatatgaatgtgaatggtgatgatcatgtcagtttctc 315
Query: 914 tgcaatggaattctcaattacaccagataaaaaataccttttagtttcaactgatctcaa 973
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 tgcaatggaattctcaattacaccagataaaaaataccttttagtttcaactgatctcaa 375
Query: 974 tcgtttgattctctttaaattgaattcaaataaacaaattcgtaatttttatggagcttt 1033
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 tcgtttgattctctttaaattgaattcaaataaacaaattcgtaatttttatggagcttt 435
Query: 1034 caatgattcctatacaaccactagaaatgcaatttgtccatctggtaaatacgtattttc 1093
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 caatgattcctatacaaccactagaaatgcaatttgtccatctggtaaatacgtattttc 495
Query: 1094 aacttctcaagataacttaatctatgtttgggaaattgcaaatcaaaaagttatcgc 1150
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 aacttctcaagataacttaatctatgtttgggaaattgcaaatcaaaaagttatcgc 552
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Number of Sequences: 108600042
Number of Hits to DB: 1,716,790,610
Number of extensions: 105757350
Number of successful extensions: 8740115
Number of sequences better than 10.0: 71
Length of query: 1326
Length of database: 106,710,029,556
Length adjustment: 24
Effective length of query: 1302
Effective length of database: 104,103,628,548
Effective search space: 135542924369496
Effective search space used: 135542924369496
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
Dictyostelium discoideum cDNA Project Home