Dictyostelium discoideum cDNA Contig-U12319-1

Assembled

Chromosomal Location of Contig-U12319-1

Sequence Contig-U12319-1

TTTAAAACTA TTAAAAGATG GTTTACGTGA TGAATTTGAA TCCATTCAAA
AAGATATTGA TCAAGTTATC CTTGAAGCTA AAAATATTAA TGAACTCTCT
AAAATGATGG AATCTCTTAA AAAATCTGAA CTTCTCCAAG CTGAAAAAGA
AAGTAAACTT GAAGAAGAAG AAGATGACGA AGAAGAAGAA GAAGAAGAGG
ACAATCAAGA ATTAGAACAA CAAAAAGAAG AATATAGTCA AGAAGAAGAA
TACGATCAAG AAGAATATGA ACAACAAGAA AAAGATATGG AAGATAACGA
ATCAAAACTT CAAAAAGAAA TAAGTGATCA ATTGGAACAA GAAGAACTTA
AAGAAATAGA AGCTTTAAAA ACGAAAAGAG ATTTAATAGA TGATGATGTA
ATCACACTCG AGAATAGATT TAGTGAATGG ATAAATGCTG ATAATTTAGG
TGTAAATGAA AATGAACTCA AAAAATTAGA AAGTAATATT AAAAATCCTG
AAGAATTAAA CTTTCCAGAA TTGTTAGATG ACCGAAAGAT TATAGTCAAA
GATCCAAAAT CAATCTTAAA AATGAAAGAA GGAGCACTCA AACAATTAAA
AGAT------ ----ATCTTT TTCAGTAACC ATTTTCAATG GTGATGGTAA
TGGTACCGCT GGTATGGGTT ATGGTAAAGG TGATAGTGCA TCATCTGCCT
TAAGAAGAGC TTTCAAAGAT TCCGAAAGAA ACGCCTTCAG TTTGGATAGA
TACAACCATC TCACTCTTCC ATCTGGTTTA GATTTCAAAT ATAGAAGTAC
CAAAGTTAAA TTCATCAAGA GTAGACCAAT GGATTTTATG GATCATCGTG
GTATTAAACC AAGTCTCATC TTACCAACTA TCGGTCTTCA TGGTGTCACC
TTTAGAACCT ATGGTAAGAA AGATTGGAAC TCTGTCTTAT TAGCCATCCA
AAAATGTCTA CCACATTATA CAAATCCTCA AGAAGCTGCT CGTATCATGG
GTAAGAAATT CGTAACTCCA AATAGAGAAA AAGCTCAAAA CAAAACTCTT
CATCAATTAT TAAAATCTAA ACTCGAAACC AGAAATAATG ATCCTTACAA
TTTAGGTATG GTTAGTAAAT TCCTCTTTGA TGTCGAAGAT AAACCAGATA
TCAATGAAAT TAAAGAACGT AGATATCAAG AAGAAATTGA TCAATTATTC
GAACGTTATC CAATCGCTCC TTCAACACCT TTCTTGGGTG ATAATGTTGA
AGATTTTAAA TTTAAAGGTA TTAATATTAA TGGTAATGGT AATGGTAATG
GTAATCGTAA ACATATTGAT AAAATGCATC AAAAAGGTAG AAAACAGGNA
CGTAATACAA GAAATTT

Translated Amino Acid Sequence Contig-U12319-1

LKLLKDGLRDEFESIQKDIDQVILEAKNINELSKMMESLKKSELLQAEKESKLEEEEDDE
EEEEEEDNQELEQQKEEYSQEEEYDQEEYEQQEKDMEDNESKLQKEISDQLEQEELKEIE
ALKTKRDLIDDDVITLENRFSEWINADNLGVNENELKKLESNIKNPEELNFPELLDDRKI
IVKDPKSILKMKEGALKQLKD---

---SFSVTIFNGDGNGTAGMGYGKGDSASSALRRAFKDSERNAFSLDRYNHLTLPSGLDF
KYRSTKVKFIKSRPMDFMDHRGIKPSLILPTIGLHGVTFRTYGKKDWNSVLLAIQKCLPH
YTNPQEAARIMGKKFVTPNREKAQNKTLHQLLKSKLETRNNDPYNLGMVSKFLFDVEDKP
DINEIKERRYQEEIDQLFERYPIAPSTPFLGDNVEDFKFKGININGNGNGNGNRKHIDKM
HQKGRKQXRNTRN

Homology Contig-U12319-1 vs CSM-Contig

Sequences producing significant alignments:                        (bits)  Value


Contig-U12319-1 (Contig-U12319-1Q) /CSM_Contig/Conti...  2079  0.0
Contig-U05633-1 (Contig-U05633-1Q) /CSM_Contig/Conti...    52  2e-06
Contig-U14635-1 (Contig-U14635-1Q) /CSM_Contig/Conti...    50  6e-06
Contig-U11312-1 (Contig-U11312-1Q) /CSM_Contig/Conti...    50  6e-06
Contig-U07546-1 (Contig-U07546-1Q) /CSM_Contig/Conti...    50  6e-06
Contig-U13348-1 (Contig-U13348-1Q) /CSM_Contig/Conti...    44  4e-04
Contig-U03328-1 (Contig-U03328-1Q) /CSM_Contig/Conti...    44  4e-04
Contig-U13586-1 (Contig-U13586-1Q) /CSM_Contig/Conti...    42  0.002
Contig-U12474-1 (Contig-U12474-1Q) /CSM_Contig/Conti...    42  0.002
Contig-U11167-1 (Contig-U11167-1Q) /CSM_Contig/Conti...    42  0.002

Homology Contig-U12319-1 vs DNA

Sequences producing significant alignments:                  (bits) Value  N


(BJ434257) Dictyostelium discoideum cDNA clone:ddv16h07, 3' ...  1271   0.0    1
(BJ445732) Dictyostelium discoideum cDNA clone:ddv60p07, 3' ...  1164   0.0    1
(BJ426850) Dictyostelium discoideum cDNA clone:ddv60p07, 5' ...   628   0.0    2
(BJ413599) Dictyostelium discoideum cDNA clone:ddv16h07, 5' ...   615   e-171  1
(ER484772) 1093015291864 Global-Ocean-Sampling_GS-35-01-01-1...    52   0.061  1
(EJ133077) 1092343575618 Global-Ocean-Sampling_GS-27-01-01-1...    52   0.061  1
(GR781253) CBWO9171.b1 CBWO Melampsora larici-populina germi...    34   0.68   2
(GR786882) CBWO13253.b1 CBWO Melampsora larici-populina germ...    34   0.68   2
(AP009608) Mycoplasma fermentans PG18 DNA, nearly complete g...    32   0.75   21
(AC123830) Mus musculus BAC clone RP24-125B17 from chromosom...    48   0.95   1

Homology Contig-U12319-1 vs Protein

Sequences producing significant alignments:                      (bits) Value


CP000804_3903(CP000804|pid:none) Roseiflexus castenholzii DSM 13...    59   3e-07
(Q98PZ9) RecName: Full=30S ribosomal protein S5;  &AL445565_43(A...    58   7e-07
(A9WH83) RecName: Full=30S ribosomal protein S5;  &CP000909_2337...    56   3e-06
CP000875_4909(CP000875|pid:none) Herpetosiphon aurantiacus ATCC ...    55   8e-06
(A4WFB1) RecName: Full=30S ribosomal protein S5;  &CP000653_3701...    54   1e-05
AE017245_620(AE017245|pid:none) Mycoplasma synoviae 53, complete...    54   1e-05
(A7MPG7) RecName: Full=30S ribosomal protein S5;  &CP000783_24(C...    54   1e-05
AP009389_336(AP009389|pid:none) Pelotomaculum thermopropionicum ...    54   1e-05
(Q493J1) RecName: Full=30S ribosomal protein S5;  &CP000016_200(...    54   2e-05
CP000048_478(CP000048|pid:none) Borrelia hermsii DAH, complete g...    53   2e-05