Dictyostelium discoideum cDNA Contig-U12315-1

Assembled

Chromosomal Location of Contig-U12315-1

Sequence Contig-U12315-1

CAAAGAGAAC AATCAAATTT TAATAAAAAC ATAATGAAAG TTATTTTCGT
AGTTTTAGCC ATTGTATTAG TTACATTATG GGCTATGCCA TCAGAAGCTG
GTAAAGACCC AAAGATTACC AATAAAGTAT TCTTTGATAT AGAAATTGAT
AATAAACCAG CAGGTAGAAT TGTATTTGGT TTATATGGAA AGACAGTACC
AAAAACAGTT GAAAACTTTA GAGCATTATG TACTGGTGAA AAAGGTTTAG
GTACCAGTGG TAAACCATTA CATTATAAAG ATAGTAAATT CCATCGTATC
ATTCCAAACT TTATGATTCA AGGTGGTGAT TTCACAAGAG GTGATGGTAC
TGGTGGTGAA TCAATTTATG GTAAAAAATT CAATGATGAA AACTTCAAAA
TTAAACACTC CAAACCAGGT CTTTTATCAA TGGCTAACGC TGGTCCAAAC
ACTAATGGTT CACAATTCTT TATTACTACA ATTAGTACAC CACATTTAGA
TAATAAACAT GTTGTATTTG GTAAAGTTAT TAAAGGAATG AGTGTTGTTA
GAGAAATTGA AAGTCAACCA ACAGGAGCAA ATGATAAACC AATTAAAGAT
TGTATTATTA TGGATTGTGG TGAATTAAAA GAAGGTGAAG ATGACGGTGT
ACCAGAGAAA ACTGGTGATG ACAAATGGGA AGATTATCCA CAAGATGATA
ATGTTGAAGG TAATGAAGCA AACTTAAAAG TTGGTGAAGC CATTAAAAAC
ATTGGTAATG ATTATTTTAA ACAAGGTAAA TCATTAGAAG CCATAGCCAA
ATACAATAAA GCATTAAGAT ATTTAGATTG TTGTAGTAAT ATCGATGGTT
TAAAGAATGT TCAAACCATT TGTTATAATA ATATGTCACA ATGTTATTTA
AAGGAAAAAA AAGGTTCCAA TGCTTTGGTA GCTGCAAAAA AAGCATTAGA
ATTATCACCA AATGATATTA AAGCACTCTT TAGAAAAGCT AAAGCTTTAT
CTTTAATGGA GGAATATGAT GAAGCTATCA AAGATTTCCA AAAAATCATT
GAAACCGATT CCGAGAATAA AGATGCAAAA CTTGAATTAG AAAGAATTAA
AATTACAAAA AGCAAAAGAT CTTAAAAGTG CCAAAGCTTA TTCAAAACTT
TTTTCTGATG ATGATTAGAA AATTTTCTAA AAAAAACACA ATAAAAAAAC
AAAT------ ----TTAAAA AAAAAAAAAA TATAAATAAA TAAATATATA
CACAAAATGT CAGATATTAT TGCAAGAGGT AACGTCGAAA AACGGTGACA
AACTTTTCAA AGCAAGATGT GCTCAATGTC ACACCACTGC TAATGGTGCA
CCAAACAAAC AAGGTCCAAA TCTTTACGGT TTATTCGGTC GTAAATCAGG
TTCCGTCGCT GGTTATGCCT ACTCTGACGC CAACAAAAAC GCTGGTATCA
TGTGGGGTGA ACAAACTCTC TTTGATTACT TAGAAAATCC AAAGAAATAC
ATTCCAAAGA CTAAAATGGC CTTTGCTGGT TTCAAATCTG AACAAGATAG
AGCTGATGTT GTCGCTTACC TTGAACAATC AACTAAATAA ACACACAATA
TAAATAAACT ACTCAACTAA ATAAACACAA TATAAATAAC TTGATTTCTT
TTTTAACAAT AAAAAAAAAA AAAAAAAAAA AAACAAAACA AAAAA

Translated Amino Acid Sequence Contig-U12315-1

krtikf**khnesyfrsfshcisyimgyairsw*rpkdyq*sil*yrn***tsr*nciwf
iwkdstkns*kl*simyw*krfryqw*titl*r**ipsyhsklydsrw*fhkr*wyww*i
nlw*kiq**klqn*tlqtrsfing*rwskh*wftilyyyn*yttfr**tcciw*sy*rne
cc*rn*kstnrsk**tn*rlyyyglw*ikrr*r*rctrenw**qmgrlstr**c*r**sk
lksw*sh*khw**lf*tr*iirshsqiq*sikifrll**yrwfkecsnhll**yvtmlfk
gkkrfqcfgsckksiriitk*y*stl*ks*sfifnggi**syqrfpknh*nrfre*rckt
*irkn*NYKKQKILKVPKLIQNFFLMMIRKFSKKNTIKKQ---

---KKKKNINK*iytqnvryyckr*rrktvtnfskqdvlnvtpllmvhqtnkvqiftvys
vvnqvpslvmptltptktlvscgvnklslit*kiqrntfqrlkwpllvsnlnkielmlsl
tlnnqlnkhti*inystk*tqyk*ldfffnnkkkkkkknktk

Homology Contig-U12315-1 vs CSM-Contig

Sequences producing significant alignments:                        (bits)  Value


Contig-U12315-1 (Contig-U12315-1Q) /CSM_Contig/Conti...  2226  0.0
Contig-U14507-1 (Contig-U14507-1Q) /CSM_Contig/Conti...    44  5e-04
Contig-U12645-1 (Contig-U12645-1Q) /CSM_Contig/Conti...    40  0.008
Contig-U12562-1 (Contig-U12562-1Q) /CSM_Contig/Conti...    40  0.008
Contig-U11809-1 (Contig-U11809-1Q) /CSM_Contig/Conti...    40  0.008
Contig-U13926-1 (Contig-U13926-1Q) /CSM_Contig/Conti...    38  0.030
Contig-U13850-1 (Contig-U13850-1Q) /CSM_Contig/Conti...    38  0.030
Contig-U12254-1 (Contig-U12254-1Q) /CSM_Contig/Conti...    38  0.030
Contig-U12088-1 (Contig-U12088-1Q) /CSM_Contig/Conti...    38  0.030
Contig-U11850-1 (Contig-U11850-1Q) /CSM_Contig/Conti...    38  0.030

Homology Contig-U12315-1 vs DNA

Sequences producing significant alignments:                  (bits) Value  N


(BJ430556) Dictyostelium discoideum cDNA clone:ddv7o18, 3' e...   868   0.0    3
(BJ377023) Dictyostelium discoideum cDNA clone:ddc22e11, 3' ...   858   0.0    3
(BJ430231) Dictyostelium discoideum cDNA clone:ddv6d16, 3' e...   876   0.0    3
(BJ428591) Dictyostelium discoideum cDNA clone:ddv12d15, 3' ...   817   0.0    3
(AF123597) Dictyostelium discoideum cyclophilin B (cypB) mRN...   950   0.0    1
(C92100) Dictyostelium discoideum slug cDNA, clone SSD482.        894   0.0    1
(AF053068) Dictyostelium discoideum cyclophilin B (CypB) gen...   533   0.0    3
(AU261352) Dictyostelium discoideum vegetative cDNA clone:VS...   484   0.0    4
(C92977) Dictyostelium discoideum slug cDNA, clone SSF406.        777   0.0    1
(AU262965) Dictyostelium discoideum vegetative cDNA clone:VS...   682   0.0    1

Homology Contig-U12315-1 vs Protein

Sequences producing significant alignments:                      (bits) Value


(P0C1I1) RecName: Full=Peptidyl-prolyl cis-trans isomerase D;   ...   304   7e-81
(Q6DGG0) RecName: Full=40 kDa peptidyl-prolyl cis-trans isomeras...   303   2e-80
BC071388_1(BC071388|pid:none) Danio rerio peptidylprolyl isomera...   302   3e-80
DQ216381_1(DQ216381|pid:none) Taeniopygia guttata clone 0058P000...   294   6e-78
(Q08752) RecName: Full=40 kDa peptidyl-prolyl cis-trans isomeras...   292   3e-77
AY893314_1(AY893314|pid:none) Synthetic construct Homo sapiens c...   291   4e-77
AB172112_1(AB172112|pid:none) Macaca fascicularis brain cDNA clo...   291   6e-77
BT043603_1(BT043603|pid:none) Salmo salar clone HM4_3222 peptidy...   290   8e-77
BT073082_1(BT073082|pid:none) Oncorhynchus mykiss clone omyk-evn...   288   5e-76
BC061335_1(BC061335|pid:none) Xenopus tropicalis peptidylprolyl ...   288   5e-76