Dictyostelium discoideum cDNA Contig-U12311-1

Assembled

Chromosomal Location of Contig-U12311-1

Sequence Contig-U12311-1

ACTTTGTATT TAAGATGAAC TCATTAATAA AAGGAACATC ATTATTATTT
GTTGGTATTA GTGGATTTTC AACAATTTTA AATTGTGAAG ATAAACCAAC
AACAACAACA AAAACAACAA CTTTAACAAA TAATAGTGTA TGTTGTAAAT
CACCAACTCA ATGTATTGTT AATAGTTCAA CATTATCACC AATAATAATT
AAAAATAAAA AAAATATGAA TAGAGAATTA AAAAAAGAGA TTTTATCATG
GAAAGAAGGA AATTGTGTAC CAGGAATAAG TGTTTGTATT CAATCAAATG
GTGAAACAAT ATACAAAGAA GCATTTGGTT TTGCTGATGT CGAAAATGTA
ATTCCAATGG AAACTTCAAG TAAATTAAGA GTTGCGAGTA TTTCAAAAGC
TTTAACTTCA ATTGGTTTAG GTGTATTATT TGAACAAGGG AAAATTAAAT
TTTCAGATTC AATTCAAAAA CATGTACCAG AATGGAAGAA TAGTCCAAAT
TTTCCAGATG ATGTTTTAAC TATTAATCAT GTTGCATCAC ATTTAGGAGG
TATTAGACAT TATGGGTTAA ATAGAAAAGC AGAATTTTAT AGTGTAGAGA
AATTTAAAAC TGATAAAGAA TA-------- --TTGGTTAC ACTTTATTAG
GTTTAGTAAT TGAATCAGCA TCTGGTAAAA GTTTTACAAA CATTTATGAG
AGATTCAGTT TTCAGACCAT GCGGTATGTT TGATACTCAA CCTGATGAAC
ATGATTCTTT AATTCCAGGT AGATCAAAAC AGTATGCTCT AAAATTCACA
CCAAGAACTC AACAAGAGAT CTCAGCAAAT GGATACGACG AAGCTAGAGT
CTCATTATGT AATGCTGAAT TCACAAATTC CAGTTATAAA TGGCCAGGTG
GTGGTTTCAT CTCAACTGCT GAAGATCTTT GTAAACTTGG TTCAACCGTT
TTAGGTGGTC GACTTTTAAA GCAATCCACA ATTGATCATC TCTTTAAACC
AAATCCACCA TTAACTGGAA AGAATACCAT GAACTATTGC ACTGGTTGGT
TTAAACAACC TTCTTCAAAA AATAATACCG ATATAATCTA TCACACTGGT
AATGCAGTTG GTGGTAGTAC TGTATTAGTA ATGACTACCT CAAGAAAACA
TTGTAGTTTC AGTTTTAGCA AATCAAGAAA AAACAAATTT AATTAATGAA
TTGGTTTTAA TTTAGCAAGA ATCGCTTCAA AATATAANAT AAAAAATAAA
A

Translated Amino Acid Sequence Contig-U12311-1

FVFKMNSLIKGTSLLFVGISGFSTILNCEDKPTTTTKTTTLTNNSVCCKSPTQCIVNSST
LSPIIIKNKKNMNRELKKEILSWKEGNCVPGISVCIQSNGETIYKEAFGFADVENVIPME
TSSKLRVASISKALTSIGLGVLFEQGKIKFSDSIQKHVPEWKNSPNFPDDVLTINHVASH
LGGIRHYGLNRKAEFYSVEKFKTDKE---

---GYTLLGLVIESASGKSFTNIYERFSFQTMRYV*yst**t*ffnsr*iktvcskihtk
nstrdlskwirrs*slim*c*ihkfql*marwwfhlnc*rsl*twfnrfrwstfkaihn*
ssl*tkstinwkeyhellhwlv*ttffkk*yrynlshw*csww*ycisndylkktl*fqf
*qikkkqi*lmnwf*fsknrfki*xkk*

Homology Contig-U12311-1 vs CSM-Contig

Sequences producing significant alignments:                        (bits)  Value


Contig-U12311-1 (Contig-U12311-1Q) /CSM_Contig/Conti...  1909  0.0
Contig-U09764-1 (Contig-U09764-1Q) /CSM_Contig/Conti...    40  0.006
Contig-U14467-1 (Contig-U14467-1Q) /CSM_Contig/Conti...    38  0.022
Contig-U10850-1 (Contig-U10850-1Q) /CSM_Contig/Conti...    38  0.022
Contig-U14818-1 (Contig-U14818-1Q) /CSM_Contig/Conti...    36  0.089
Contig-U13903-1 (Contig-U13903-1Q) /CSM_Contig/Conti...    36  0.089
Contig-U13127-1 (Contig-U13127-1Q) /CSM_Contig/Conti...    36  0.089
Contig-U11893-1 (Contig-U11893-1Q) /CSM_Contig/Conti...    36  0.089
Contig-U11711-1 (Contig-U11711-1Q) /CSM_Contig/Conti...    36  0.089
Contig-U08220-1 (Contig-U08220-1Q) /CSM_Contig/Conti...    36  0.089

Homology Contig-U12311-1 vs DNA

Sequences producing significant alignments:                  (bits) Value  N


(BJ431526) Dictyostelium discoideum cDNA clone:ddv14a18, 3' ...   995   0.0    2
(BJ414614) Dictyostelium discoideum cDNA clone:ddv19g21, 5' ...   765   0.0    4
(BJ413179) Dictyostelium discoideum cDNA clone:ddv14a18, 5' ...   652   0.0    4
(BJ431208) Dictyostelium discoideum cDNA clone:ddv13b08, 3' ...   424   e-114  1
(BJ426611) Dictyostelium discoideum cDNA clone:ddv59i15, 5' ...   190   1e-84  2
(BJ445487) Dictyostelium discoideum cDNA clone:ddv59i15, 3' ...   190   1e-75  3
(AC151709) Medicago truncatula clone mth2-31g22, complete se...    38   0.12   8
(FH635933) CHO_OF4564xe10r1.ab1 CHO_OF4 Nicotiana tabacum ge...    50   0.22   1
(DW506311) GH_TMIRS_102_F11_F Cotton Normalized Library dT p...    50   0.22   1
(DW501307) GH_TMIRS_055_D06_R Cotton Normalized Library dT p...    50   0.22   1

Homology Contig-U12311-1 vs Protein

Sequences producing significant alignments:                      (bits) Value


FN357381_23(FN357381|pid:none) Schistosoma mansoni genome sequen...   102   2e-20
CP000685_497(CP000685|pid:none) Flavobacterium johnsoniae UW101,...    91   7e-17
AP008955_3964(AP008955|pid:none) Brevibacillus brevis NBRC 10059...    87   1e-15
CP000817_1764(CP000817|pid:none) Lysinibacillus sphaericus C3-41...    80   2e-13
CP001614_1891(CP001614|pid:none) Teredinibacter turnerae T7901, ...    80   2e-13
AJ720272_1(AJ720272|pid:none) Gallus gallus mRNA for hypothetica...    80   2e-13
BC037198_1(BC037198|pid:none) Homo sapiens lactamase, beta, mRNA...    79   3e-13
AY358709_1(AY358709|pid:none) Homo sapiens clone DNA76522 MRPL56...    79   3e-13
AK027808_1(AK027808|pid:none) Homo sapiens cDNA FLJ14902 fis, cl...    79   3e-13
CP000903_2932(CP000903|pid:none) Bacillus weihenstephanensis KBA...    79   3e-13