Dictyostelium discoideum cDNA Contig-U12307-1

Assembled

Chromosomal Location of Contig-U12307-1

Sequence Contig-U12307-1

GTTATAAAAT AATAGTTAAT ATAGCTAAAT TATAGTTATA ATTTTTAAAA
AAAATATGAA ATTAATTTCA ATAATTTTTT CCTTATTTTT AATAATCAAT
TTGGTTTTTT TCTACAGATC CAACAATTGT TAGTTTTAGA AAGCCAGTTG
AAAAAGTATA TCCAAGTGAA TATTGTTTGC CATCTTTCAC TATATTGATT
AATTATCCAG ATCCAATCCA ATATAATTAT CAATTAGGTT TATATGATAG
GAGTGGAGGG TATGGTGGCA GCATGCCATC TGCCGTAAAT GGAACCTTAT
ATCTTTTTAC ACTTACACAT AAAGTTCCAA TTGGTAAAAA TCAACCAGTT
TCTTTGTATA TCCAAGATAC CTCAAAAAAT CCATGGTTTA CTTTTGATTT
CAATAACTAT ACTACCTATG ATTGCGATCC ACTTCCACCC TGTTACTATG
AAATCAAAAC AAAATACTTG GATTAAAACT AGTGGCCAAT ATTCCAATTT
AATTTGGTAC CATATGGTTG AAGTTTCAGG TTTAGATAAA TCAGCTCCAT
ACGATGCTTT TACATGTAAT GTTCCAAAGC CATTTATTTG TATGTTCCAA
GAGTTTCTTA ATGGTCCAAA ACCAATCAAT TTTTATTTCC AAGTTGGAAT
TTATACGACA GATGTAAA-- --------AC TTAATAGTCT TTTTGATGGT
TTAAGTGCAC CAGCAAACCC ACCTGTTTCA ATTAGATCCT TAGAAAATTA
TCCAATCAAT GGTTCAACTG TTACTAAAAA TGAAATGGTT AATGATGCAA
TGTATATTAT GAATATCATA AACAAAAATG CTCTTTGTGG TATTTCATCA
CCAAAAGATT TTTTGATTTC AAATATATTA ATCCCAGTTT TAGGTACACC
TGCAAATGCT TCTTACATTG GTTTCTCATC TTTTAACTAT CAAAATAGTC
CAATTAAATC CCATGTTCAG ATCATTGATA GTCAAGGTAC AAAAAGAATT
GGTATTGATA ATGTGCTTTT TGTTAATCCA AAATCTTATG ATAATGTCAT
TGAAAATGTT CAAAATGCAA CCTATGTTAA AAGCTCTAAT ATTAATAAAA
CTTTAATTAA TATTAAGGCT GATGTTTCAT TTAATCCAAA AGCTACTTTA
ACAAGTAGCT TTTCAACTTC TTTATACCAA ACAGTGTTAG CATATCCATA
TGGTTATTCA AATGGTACAG TTAAATACCA TTCAGTTTCA TTGTCATCTG
CATCTCCAGA GTATTCCACT TCTTCAAATT CATATATAAT TTTAGGCTCT
CCATCNAAAT CGGATCCGGT AATTCATCAC AATCACA

Translated Amino Acid Sequence Contig-U12307-1

vik**li*lnysynf*kkyeinfnnfflifnnqfgfflqiqqllvlesqlkkyiqvnivc
hlsly*liiqiqsniiin*vymigvegmvaachlp*MEPYIFLHLHIKFQLVKINQFLCI
SKIPQKIHGLLLISITILPMIAIHFHPVTMKSKQNTWIKTSGQYSNLIWYHMVEVSGLDK
SAPYDAFTCNVPKPFICMFQEFLNGPKPINFYFQVGIYTTDV---

---LNSLFDGLSAPANPPVSIRSLENYPINGSTVTKNEMVNDAMYIMNIINKNALCGISS
PKDFLISNILIPVLGTPANASYIGFSSFNYQNSPIKSHVQIIDSQGTKRIGIDNVLFVNP
KSYDNVIENVQNATYVKSSNINKTLINIKADVSFNPKATLTSSFSTSLYQTVLAYPYGYS
NGTVKYHSVSLSSASPEYSTSSNSYIILGSPSKSDPVIHHNH

Homology Contig-U12307-1 vs CSM-Contig

Sequences producing significant alignments:                        (bits)  Value


Contig-U12307-1 (Contig-U12307-1Q) /CSM_Contig/Conti...  2365  0.0
Contig-U04810-1 (Contig-U04810-1Q) /CSM_Contig/Conti...    38  0.024
Contig-U11233-1 (Contig-U11233-1Q) /CSM_Contig/Conti...    36  0.095
Contig-U01623-1 (Contig-U01623-1Q) /CSM_Contig/Conti...    36  0.095
Contig-U14638-1 (Contig-U14638-1Q) /CSM_Contig/Conti...    34  0.37
Contig-U14442-1 (Contig-U14442-1Q) /CSM_Contig/Conti...    34  0.37
Contig-U14276-1 (Contig-U14276-1Q) /CSM_Contig/Conti...    34  0.37
Contig-U13888-1 (Contig-U13888-1Q) /CSM_Contig/Conti...    34  0.37
Contig-U13880-1 (Contig-U13880-1Q) /CSM_Contig/Conti...    34  0.37
Contig-U13297-1 (Contig-U13297-1Q) /CSM_Contig/Conti...    34  0.37

Homology Contig-U12307-1 vs DNA

Sequences producing significant alignments:                  (bits) Value  N


(BJ428210) Dictyostelium discoideum cDNA clone:ddv11j04, 3' ...  1300   0.0    1
(BJ427647) Dictyostelium discoideum cDNA clone:ddv63j03, 5' ...   650   0.0    3
(BJ424414) Dictyostelium discoideum cDNA clone:ddv52j08, 5' ...   650   0.0    3
(BJ421581) Dictyostelium discoideum cDNA clone:ddv43l03, 5' ...   634   0.0    3
(BJ410077) Dictyostelium discoideum cDNA clone:ddv11j04, 5' ...   831   0.0    2
(BA000021) Wigglesworthia glossinidia endosymbiont of Glossi...    34   0.010  22
(EJ161440) 1092344049475 Global-Ocean-Sampling_GS-27-01-01-1...    52   0.059  1
(AC201146) Strongylocentrotus purpuratus clone R3-14E1, WORK...    42   0.18   5
(EK342138) 1095467066548 Global-Ocean-Sampling_GS-31-01-01-1...    38   0.27   2
(AP010549) Lotus japonicus genomic DNA, chromosome 3, clone:...    48   0.93   1

Homology Contig-U12307-1 vs Protein

Sequences producing significant alignments:                      (bits) Value


AM295005_1(AM295005|pid:none) Homo sapiens mRNA for boll protein.      42   0.039
AJ717405_1(AJ717405|pid:none) Pan paniscus partial mRNA for BOUL...    42   0.039
AK093453_1(AK093453|pid:none) Homo sapiens cDNA FLJ36134 fis, cl...    42   0.039
AB074454_1(AB074454|pid:none) Macaca fascicularis testis cDNA cl...    42   0.039
AJ746579_1(AJ746579|pid:none) Microcebus murinus partial mRNA fo...    42   0.039
(Q8N9W6) RecName: Full=Protein boule-like;  &AC011997_1(AC011997...    42   0.039
FJ623266_1(FJ623266|pid:none) Bos taurus boule mRNA, complete cds.     42   0.050
AJ717407_1(AJ717407|pid:none) Callithrix jacchus partial mRNA fo...    41   0.11
AJ717408_1(AJ717408|pid:none) Saimiri sciureus partial mRNA for ...    41   0.11
AE014187_412(AE014187|pid:none) Plasmodium falciparum 3D7 chromo...    38   0.73