Homology Contig-U12307-1 vs DNA
Query= Contig-U12307-1 (Contig-U12307-1Q) /CSM_Contig/Contig-U12307-1Q.Seq.d
(1337 letters)
Database: ddbj_A
108,600,042 sequences; 106,710,029,556 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value N
(BJ428210) Dictyostelium discoideum cDNA clone:ddv11j04, 3' ... 1300 0.0 1
(BJ427647) Dictyostelium discoideum cDNA clone:ddv63j03, 5' ... 650 0.0 3
(BJ424414) Dictyostelium discoideum cDNA clone:ddv52j08, 5' ... 650 0.0 3
(BJ421581) Dictyostelium discoideum cDNA clone:ddv43l03, 5' ... 634 0.0 3
(BJ410077) Dictyostelium discoideum cDNA clone:ddv11j04, 5' ... 831 0.0 2
(BA000021) Wigglesworthia glossinidia endosymbiont of Glossi... 34 0.010 22
(EJ161440) 1092344049475 Global-Ocean-Sampling_GS-27-01-01-1... 52 0.059 1
(AC201146) Strongylocentrotus purpuratus clone R3-14E1, WORK... 42 0.18 5
(EK342138) 1095467066548 Global-Ocean-Sampling_GS-31-01-01-1... 38 0.27 2
(AP010549) Lotus japonicus genomic DNA, chromosome 3, clone:... 48 0.93 1
(AF129501) Buchnera aphidicola natural-host Diuraphis noxia ... 42 0.96 2
(AE014187) Plasmodium falciparum 3D7 chromosome 14, complete... 40 1.1 19
(DE263917) Oryzias latipes DNA, clone: ola1-153F08.R, genomi... 36 1.1 2
(AP004768) Oryza sativa Japonica Group genomic DNA, chromoso... 34 1.9 2
(AP005513) Oryza sativa Japonica Group genomic DNA, chromoso... 34 1.9 2
(AC176128) Strongylocentrotus purpuratus clone R3-24O20, WOR... 34 2.2 7
(CL522352) DAK2E01 Flanking Sequence Tag of Oryza sativa T-D... 34 2.5 2
(CL522350) DAK2D01 Flanking Sequence Tag of Oryza sativa T-D... 34 2.5 2
(CL522351) SAM3F04 Flanking Sequence Tag of Oryza sativa T-D... 34 2.5 2
(AL445565) Mycoplasma pulmonis (strain UAB CTIP) complete ge... 36 2.7 12
(CV743952) SJAL_049_17.T7 SJL Schistosoma japonicum cDNA, mR... 42 3.3 2
(AC189234) Brassica rapa subsp. pekinensis clone KBrB014C24,... 32 3.3 7
(CV743951) SJAL_049_17.T3 SJL Schistosoma japonicum cDNA, mR... 42 3.4 2
(CJ351184) Molgula tectiformis cDNA, cleaving embryo clone:m... 42 3.4 2
(CU855515) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 38 3.6 11
(CJ405328) Molgula tectiformis cDNA, gonad clone:mtgd023a04,... 42 3.6 2
(AL808025) Mouse DNA sequence from clone RP23-45M22 on chrom... 46 3.7 1
(AC187496) Rhesus macaque BAC clone CH250-63H12 from chromos... 46 3.7 1
(AP005453) Oryza sativa Japonica Group genomic DNA, chromoso... 46 3.7 1
(AF016447) Caenorhabditis elegans cosmid C54F6, complete seq... 46 3.7 1
(AP005015) Homo sapiens genomic DNA, chromosome 8q23, clone:... 46 3.7 1
(AC107890) Homo sapiens chromosome 8, clone RP11-709P2, comp... 46 3.7 1
(AC126972) Rattus norvegicus clone CH230-133N10, *** SEQUENC... 46 3.7 1
(AC101536) Mus musculus clone RP23-192H5, LOW-PASS SEQUENCE ... 46 3.7 1
(AC097618) Rattus norvegicus clone CH230-112J18, *** SEQUENC... 46 3.7 1
(AC022204) Homo sapiens chromosome 8 clone RP11-535F5, WORKI... 46 3.7 1
(CR655502) Tetraodon nigroviridis full-length cDNA. 46 3.7 1
(CR652609) Tetraodon nigroviridis full-length cDNA. 46 3.7 1
(CR651583) Tetraodon nigroviridis full-length cDNA. 46 3.7 1
(BH400246) AG-ND-126M3.TR ND-TAM Anopheles gambiae genomic c... 46 3.7 1
(EJ802731) 1093017437765 Global-Ocean-Sampling_GS-30-02-01-1... 46 3.7 1
(ED107975) AUAC-aab19d03.g1 Ascaris suum whole genome shotgu... 46 3.7 1
(DU711750) ZHU1130_TT332-24-1 CSIROPIFGRTT_DSTDNA_B2 Oryza s... 46 3.7 1
(CV743495) SJAL_046_34.T7 SJL Schistosoma japonicum cDNA, mR... 46 3.7 1
(CB563834) AGENCOURT_13327843 NICHD_XGC_Tad2 Xenopus laevis ... 46 3.7 1
(GO020072) LJMB991TF JCVI-LJ2 Lotus japonicus cDNA 5', mRNA ... 46 3.7 1
(CJ383776) Molgula tectiformis cDNA, gastrula/neurula clone:... 42 3.7 2
(CJ361622) Molgula tectiformis cDNA, cleaving embryo clone:m... 42 3.8 2
(CJ380707) Molgula tectiformis cDNA, gastrula/neurula clone:... 42 4.2 2
(CJ364806) Molgula tectiformis cDNA, cleaving embryo clone:m... 42 4.3 2
(CJ402183) Molgula tectiformis cDNA, gonad clone:mtgd017b21,... 42 4.5 2
(AZ691992) ENTHT05TF Entamoeba histolytica Sheared DNA Entam... 42 4.6 2
(CJ403884) Molgula tectiformis cDNA, gonad clone:mtgd008o01,... 42 4.6 2
(AY815982) Schistosoma japonicum SJCHGC02123 protein mRNA, c... 42 5.0 2
(AM180355) Clostridium difficile 630 complete genome. 38 5.4 21
(U23947) Mycoplasma pulmonis variable surface antigen locus,... 38 5.7 2
(GQ250046) Dunaliella salina strain CCAP 19/18 chloroplast, ... 40 6.5 7
(CU019669) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 40 6.7 6
(AC232645) Solanum lycopersicum chromosome 7 clone C07HBa008... 42 8.3 4
(DY631389) hh_Ab_Pinky2003_000010547 Cichlid Pinky cDNA libr... 34 9.0 2
(FH316986) CHO_OF4490xb06f1.ab1 CHO_OF4 Nicotiana tabacum ge... 34 9.0 3
(EJ235199) 1092405884969 Global-Ocean-Sampling_GS-27-01-01-1... 34 9.1 2
(AC234722) Brassica rapa subsp. pekinensis clone KBrB064L06,... 32 9.7 7
>(BJ428210) Dictyostelium discoideum cDNA clone:ddv11j04, 3' end,
single read.
Length = 660
Score = 1300 bits (656), Expect = 0.0
Identities = 659/659 (100%)
Strand = Plus / Minus
Query: 679 acttaatagtctttttgatggtttaagtgcaccagcaaacccacctgtttcaattagatc 738
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 660 acttaatagtctttttgatggtttaagtgcaccagcaaacccacctgtttcaattagatc 601
Query: 739 cttagaaaattatccaatcaatggttcaactgttactaaaaatgaaatggttaatgatgc 798
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 600 cttagaaaattatccaatcaatggttcaactgttactaaaaatgaaatggttaatgatgc 541
Query: 799 aatgtatattatgaatatcataaacaaaaatgctctttgtggtatttcatcaccaaaaga 858
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 aatgtatattatgaatatcataaacaaaaatgctctttgtggtatttcatcaccaaaaga 481
Query: 859 ttttttgatttcaaatatattaatcccagttttaggtacacctgcaaatgcttcttacat 918
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 ttttttgatttcaaatatattaatcccagttttaggtacacctgcaaatgcttcttacat 421
Query: 919 tggtttctcatcttttaactatcaaaatagtccaattaaatcccatgttcagatcattga 978
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 tggtttctcatcttttaactatcaaaatagtccaattaaatcccatgttcagatcattga 361
Query: 979 tagtcaaggtacaaaaagaattggtattgataatgtgctttttgttaatccaaaatctta 1038
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 tagtcaaggtacaaaaagaattggtattgataatgtgctttttgttaatccaaaatctta 301
Query: 1039 tgataatgtcattgaaaatgttcaaaatgcaacctatgttaaaagctctaatattaataa 1098
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 tgataatgtcattgaaaatgttcaaaatgcaacctatgttaaaagctctaatattaataa 241
Query: 1099 aactttaattaatattaaggctgatgtttcatttaatccaaaagctactttaacaagtag 1158
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 aactttaattaatattaaggctgatgtttcatttaatccaaaagctactttaacaagtag 181
Query: 1159 cttttcaacttctttataccaaacagtgttagcatatccatatggttattcaaatggtac 1218
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 180 cttttcaacttctttataccaaacagtgttagcatatccatatggttattcaaatggtac 121
Query: 1219 agttaaataccattcagtttcattgtcatctgcatctccagagtattccacttcttcaaa 1278
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 120 agttaaataccattcagtttcattgtcatctgcatctccagagtattccacttcttcaaa 61
Query: 1279 ttcatatataattttaggctctccatcnaaatcggatccggtaattcatcacaatcaca 1337
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60 ttcatatataattttaggctctccatcnaaatcggatccggtaattcatcacaatcaca 2
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Number of Sequences: 108600042
Number of Hits to DB: 1,780,741,289
Number of extensions: 106759311
Number of successful extensions: 8335849
Number of sequences better than 10.0: 63
Length of query: 1337
Length of database: 106,710,029,556
Length adjustment: 24
Effective length of query: 1313
Effective length of database: 104,103,628,548
Effective search space: 136688064283524
Effective search space used: 136688064283524
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
Dictyostelium discoideum cDNA Project Home