Dictyostelium discoideum cDNA Contig-U12300-1

Assembled

Chromosomal Location of Contig-U12300-1

NO HIT FOUND.

Sequence Contig-U12300-1

TTGAAAGTAA ATTAAGAAGT GAATTACAAA AATTAAAATT TGAATTAATT
ACCTTGATCA ATCAAAAATC AGATTCAATT TATAATGAAC AAAAAGAATA
TCAAAAACAA GAACGTCTTT TAAGAGAAGA TGATAGAAAA TATATAGAAA
CTTTAAAGAT TTCAATTTTC TCATCATTAA AAGAGGCAAA GATTGAAAGA
GATCAATTAT CCAATCAAAT CAATTCATTA TTACAAGATA ATAAAACCAT
TCAAATCAAT GCTGAACAAG CTGAACAATT GGCAAGCACA AAGAATGATC
AACTATTGAA AGCAAATGAT GAATTGTTGG CACAATTGGA ACAATCTAGA
AAACAACGTT TATTTGAAAT TCAAGAATCA GAGAATAGAT TCAAACAAGA
TAGAGAACAA TTAATCAATG ATCATAAACA ACAAGAGAAA TTAGAACAAC
AAAAGAGAGA TCTCGAAGAG ACTAGAATCA TTGAACAATT GAAACAAGAG
TCGGAACAAC GTAAAAAACA ATATGAAGAT CATTTGAAAG AAAGAGAATC
AGAGAGAGAG AAAGAGGTTC AACAATTATT ATTAAAACAA AAAGAAGCTG
AACAATTAAT TGAACAACAA AAACAAGATC AACAAAAGCT CAAACAAGAG
AGAGAACTTG AAATTCGTAA ACAACAACAA TTGGAACACC AATTGGAAGA
GGAGAGAAAA CAAGAACAAA AGAAAAAGAA AGAATTGGAT GATCAAGAAT
GGAAGAGAAA GGAACAACAA TATCAATCTG ATCTTCAATT GGAAAAAGAG
AAACAATCTG CATTAGAGTT GGAACGTGAA CGTGAAATTC AATCAATTCT
TGAATCAGAG AAACAACGTC AACAACAAGT TGAACTTGAA ATTCAACAAG
AAAAAGAAAG AACCAAACAA TTACAACAAC AATGGGAACA AGAGAAATTG
AAATTGGAAG AGGAAAGAAA AGAATTGGAA AATAAAAAAT CATTGGAAAT
GGCTCAAAAG AAACAAGAAC TATTAGAGTT AAATAAAAAG ATTGAACAAG
AACAACGTGA TCTAGAAGAA CGTATTCAAA AAGAACAAAA AGAAAAAGAT
CAAAGAGAAN AACAAGATCA ATTGGCTCAA ATGGNATTAG ANAGAGAAAG
AGAAAGNGAA AANGAAGNAA NNNAGAGANN ACAGCAACAA TGGGCTCAAT
TAGAAAAAGA AGAAANAGAA AGAAATGAAN NACTTGAAAA AGATAGACAA
TTACAATTAG AACAAGAGAA ATTGAAATTG GAAGAGGAAA GAAAAGAATT
GGAAAATAAA NAATCATTGG AAATGGCTCA AAAGAAACAA GAACTATTAG
AGTTAAATAA AAAGATTGAA CAAGAACAAC GTGATCTAGA AGAACGTATT
CAAAAAGAAC AAAAAGAAAA AGCATCAAAG AGAAAAACAA GATCAATTGG
CTCAAATGGA ATTAGAAAGA GAAAGAGAAA GAGAAAAAGA AGAAAAAAAG
AGAAAACAAC AACAATTGGC TCAATTAGAA AAAGAAGAAA GAGAAAGAAA
TGAAAAACTT GAAAAAGATA GACAATTACA ATTAGAACAA GAAATTGAAA
AAGAAAGAAA ATTAAAACAA CAACAAAAAG AAAAAGAACA AAAAGAACAA
AAAGAAAAAA GAGAACAAAG AGAAAAAGAA GAAAAAGAAG AAAAAGATAA
AAAAGATAAA GAAGAAAAAG AAAAACAAGA ATTAAAGAAA AAACAACAAC
AACAACAACA ACAAAAAGAA AAAGAAAAAC AAGAAAGAAA AGAAAAAGAA
GAAAGAGAAG AAAGAGAAAA AGAAGAAAGA GAAGAAAGAG AAGAAAGAGA
AGAAAAAGAA AGAGAATTAA AATTAAAACA ACAAAAGAAA CAAAAAGAAG
AAAAAGAAAA AGAACTAAAA TTAAAACAAC AAAAAGAACA AGAAGAAAGA
GAAGAAAAAG AAGAAAAATT AAGAGAAGAA AAAGAAAAAC AAAGAAAACT
TGAAATTCAA CAAGAAAAAG AAAGACAACA AAAAGAAAAA GCTGAAAAAT
TAGAAAAAGA AAAATTAGAA AAAGAAAAAG AAACAAAGAA AACAAGAGGT
GGTTCATTAC CATCAGTTCC AGTCAAAAAA CAACAACAAA CTCAAAAAGA
TGATAGTGAT GATTCATCTT CTGAAGATGA AAAACCAAAA TCAGTTGTTG
---------- TTGNATCATG TAANCCATCA TTTGTAAAGA AACNACTNAA
ATAAACNACC AGAGACCAGA ACCAGAAGAA GTTAAACCAA TTGTAAAGAA
ATCAATTCAA CCAAAATCAG ATTTACAAGG GAATCCAGAT GTTGAATGTG
ATTTATCCAA ATCCAGAATT AAGACAAATT TGGTTAGATG TTAGAGATGA
TGAAACTAAT ACCAATTGGA TGTTAATTGG TTATGGTGGT TATAAGAAAA
CTTTACAACC TTATGGATCA GGTTCAGGTG GTTTAAAGGA AATGTCAAAA
CATTTGAAAG AGGAGGTATT GTATGGTTAT TTACGTGTTA TCTATGGTGA
TTCCGATAGA AGTAAATTCA TTTTCATCAC CTATGTACCA GAATCATTAA
GTGGTATCGC CAAAGCCAAA GCTAATATGC ATAAACCTCA TGTTGATAAT
TTCTTTAAAT ATAATCATAC TCAATTCCAA GTGATGTCAA ATCGATGAAA
TCTCTGATGA TATCATTCAA CAATAGATTA AAACAAACTT CAGGTGCAAA
CTATGGTAAA GGTACCTCTC CAGATGATAC AAGTAAAACT GAAAACCTTT
AAAGGTATCA AAGAGAATGC AAAAGTTTTC TATCAAGGTA CTGAAAAGAA
AGGTAATTTC AGTAAAGGTG GTGGTGGCGG TGAAACTATC TCTTACAATA
AAGGTCCACT CTCTGTAACA CCATTAAGTT TAACTGGTCG TGCTGGTATC
ACTGAAAAAT ATATTAAATC AGATGTTAGA ACAAGACTAA TAACAAAGAT
GATGAAGTAT TTGTTCAAGC AAGAAAAGGT GCTAAATCTT CTTTAAATAA
AGAAAAAGAT AATCATAGTA ATAATAACAA CACCACAACA CAATCATCAT
CATCATCATC GTCATCATCA GCTGATAGAT CAAAATCACC ATTAACAGTT
GTTGTTAATG ATGATAAATC TGAATCTGAA ACTGAATCAA CACCATCGAT
TCCATCAAAA GCAAATTTAA AACCAGTTTC AAAACGTTCA GCTACACCAA
CAAGTGATAT AGATAGTACA AATAGTGAAT CGGAATCAGT GGTTAAATCA
ACCACCAAAA AACCAAGTGC TGGTATAAAC GCTGGTGGCA ATGATAAACC
AGTATCAACT GGACCTGATA GATGTTTATC ATGTCAAAAA CTTGTTTATC
AAGCAGAGAA ATTATCTGCT GATAATCGTA TTTTCCATAA AAATTGTTTC
AAATGTTCAA GTTGTGGTTG TCAAATGAAA TTAGGTAACT ATGCTAGTAT
GGATCAAATT TATTTCTGTA AAAATTGTTT CAAAAAGAAA TTTAAAGAAA
AAGGTAACTA TTCTGAAGGT TTTGGTAAAT TAAAACCACA ACAACAATTT
AATTTGAAAA AGAGTGGTAG TGGTGGTAGT TCCAATGCTG ATACAGATGA
TTCTGAAGAT GAATTTCATC AAAGAGAAAA AGAACAACAA CAAAAAGAAA
AGGATGAATT AAAGAAAAGA CAAGAAAAAC AATTAGAAAA AGAAAGACAA
CAAGAAAAAC AACAACAATT AGAACAAAAA GAGAAAGATC AAAAAGAGAA
AGATCAAAAA GAAAAAGAAC AAAAAGAAAA GGAACAAAAA GAAAAGGAAA
AAGCCAAAAA ATTAAAACAA CAAGAGCAAA AGGAAA

Translated Amino Acid Sequence Contig-U12300-1

lkvn*evnykn*nln*lp*siknqiqfimnkkniknknvf*ekmieni*kl*rfqfshh*
krqrlkeinypiksihyykiikpfksmlnklnnwqaqrminy*kqmmncwhnwnnlennv
ylkfknqridsnkienn*smiinnkrn*nnkreiskrleslnn*nksrnnvknnmkii*k
kenqrerkrfnnyy*nkkklnn*lnnknkinkssnkrenlkfvnnnnwntnwkrrenknk
rkrknwmikngrernnninlifnwkkrnnlh*swnvnvkfnqflnqrnnvnnklnlkfnk
kkkepnnynnngnkrn*nwkrkeknwkiknhwkwlkrnkny*s*ikrlnknnvi*knvfk
knkkkkikexnkinwlkwx*xekekxkxkxxrxxsnngln*kkkkxkemxxlkkidnyn*
nkrn*nwkrkeknwkixnhwkwlkrnkny*s*ikrlnknnvi*KNVFKKNKKKKHQREKQ
DQLAQMELEREREREKEEKKRKQQQLAQLEKEERERNEKLEKDRQLQLEQEIEKERKLKQ
QQKEKEQKEQKEKREQREKEEKEEKDKKDKEEKEKQELKKKQQQQQQQKEKEKQERKEKE
EREEREKEEREEREEREEKERELKLKQQKKQKEEKEKELKLKQQKEQEEREEKEEKLREE
KEKQRKLEIQQEKERQQKEKAEKLEKEKLEKEKETKKTRGGSLPSVPVKKQQQTQKDDSD
DSSSEDEKPKSVV---

---XSCXPSFVKKXLK*ttrdqnqkklnql*rnqfnqnqiykgiqmlnviypnpelrqiw
ldvrddetntnwmligyggykktlqpygsgsgglkemskhlkeevlygylrviygdsdrs
kfifityvpeslsgiakakanmhkphvdnffkynhtqfqvmsnr*nl**yhstid*nklq
vqtmvkvplqmiqvklktfkgikenakvfyqgtekkgnfskgggggetisynkgplsvtp
lsltgragitekyiksdvrtrlitkmmkylfkqekvlnll*ikkkiiiviittpqhnhhh
hhrhhqlidqnhh*qlllmminlnlklnqhhrfhqkqi*nqfqnvqlhqqvi*ivqivnr
nqwlnqppknqvlv*tlvaminqyqldlidvyhvknlfikqrnylliivfsikivsnvqv
vvvk*n*vtmlvwikfisvkivskrnlkkkvtilkvlvn*nhnnnli*krvvvvvvpmli
qmilkmnfikekknnnkkkrmn*rkdkknn*kkkdnkknnnn*nkkrkikkrkikkkknk
kkrnkkkrkkpkn*nnkskrk

Homology Contig-U12300-1 vs CSM-Contig

Sequences producing significant alignments:                        (bits)  Value


Contig-U12300-1 (Contig-U12300-1Q) /CSM_Contig/Conti...  1782  0.0
Contig-U13720-1 (Contig-U13720-1Q) /CSM_Contig/Conti...   256  2e-67
Contig-U05289-1 (Contig-U05289-1Q) /CSM_Contig/Conti...    48  7e-05
Contig-U12528-1 (Contig-U12528-1Q) /CSM_Contig/Conti...    44  0.001
Contig-U06960-1 (Contig-U06960-1Q) /CSM_Contig/Conti...    44  0.001
Contig-U07084-1 (Contig-U07084-1Q) /CSM_Contig/Conti...    42  0.004
Contig-U12177-1 (Contig-U12177-1Q) /CSM_Contig/Conti...    40  0.018
Contig-U10870-1 (Contig-U10870-1Q) /CSM_Contig/Conti...    40  0.018
Contig-U09686-1 (Contig-U09686-1Q) /CSM_Contig/Conti...    40  0.018
Contig-U00906-1 (Contig-U00906-1Q) /CSM_Contig/Conti...    40  0.018

Homology Contig-U12300-1 vs DNA

Sequences producing significant alignments:                  (bits) Value  N


(BJ436510) Dictyostelium discoideum cDNA clone:ddv31l07, 3' ...   850   0.0    2
(BJ438462) Dictyostelium discoideum cDNA clone:ddv37c02, 3' ...   690   0.0    4
(BJ438248) Dictyostelium discoideum cDNA clone:ddv36h20, 3' ...   660   0.0    7
(BJ436232) Dictyostelium discoideum cDNA clone:ddv30a17, 3' ...   791   0.0    3
(BJ445483) Dictyostelium discoideum cDNA clone:ddv59h17, 3' ...   791   0.0    4
(BJ419674) Dictyostelium discoideum cDNA clone:ddv36h20, 5' ...  1035   0.0    1
(BJ425397) Dictyostelium discoideum cDNA clone:ddv55h15, 5' ...  1031   0.0    1
(BJ430714) Dictyostelium discoideum cDNA clone:ddv8n10, 3' e...   791   0.0    2
(BJ444200) Dictyostelium discoideum cDNA clone:ddv55h15, 3' ...   791   0.0    2
(BJ443206) Dictyostelium discoideum cDNA clone:ddv52a07, 3' ...   791   0.0    2

Homology Contig-U12300-1 vs Protein

Sequences producing significant alignments:                      (bits) Value


BC084208_1(BC084208|pid:none) Xenopus laevis hypothetical LOC495...    70   6e-10
BC088558_1(BC088558|pid:none) Xenopus tropicalis hypothetical LO...    70   8e-10
BC121434_1(BC121434|pid:none) Xenopus tropicalis epithelial prot...    69   1e-09
EF119718_1(EF119718|pid:none) Homo sapiens xeplin variant 2 (CMY...    69   1e-09
BC172832_1(BC172832|pid:none) Synthetic construct Mus musculus c...    69   1e-09
AK122889_1(AK122889|pid:none) Homo sapiens cDNA FLJ16539 fis, cl...    69   1e-09
AB097518_1(AB097518|pid:none) Macaca fascicularis brain cDNA clo...    68   3e-09
AJ721104_1(AJ721104|pid:none) Gallus gallus mRNA for hypothetica...    67   4e-09
BC001247_1(BC001247|pid:none) Homo sapiens LIM domain and actin ...    67   7e-09
AK000372_1(AK000372|pid:none) Homo sapiens cDNA FLJ20365 fis, cl...    66   9e-09