Dictyostelium discoideum cDNA Contig-U12286-1

Assembled

Chromosomal Location of Contig-U12286-1

Sequence Contig-U12286-1

CACTGTTGGC CTACTGGAAT AAATGTCAAG TAAATTCATG TGATAAAACT
ACAGGAAATT GTAAACCAGA AAATTTAAAG TGCCCAGACA GATCAAATGA
GTGTCTTAAA AATACAGGTT GTGATGATTT AACCGGTTGT AAATATGTTA
GTATATGCAC AGATTCATGC GATAAAAAAG GTAATGCTTG TGTTGCAGGT
AAATGTCAAC AAAAAACAAC TAGCGATTGT GCTGCTGAGT TAGATGATAA
TTCATGTAAA GTATATTCTT GTAATTCAAC TCGTGGTGGT TGTTACTCTG
AAAACAAATG TAAACCAGAT CCAACTCAAA TTTGTGATGT TGCAAGTTGT
GATGATGGTG CTTGTNGTAT CAAAACTTTA CCACCTGATG AATGTAATTG
TGGTTGTAAA CCAAACTTTT GCCAAAAGAG TAATTGTGTT AAAAACCCAT
CAAATAATCA ATNCGAATGT TCT------- ---TGTGATG CAGTGGCCCA
AAAAATAACT CATGTACCAT ATGATACTTG TAAAGGCTGT ATGTCATGTA
ATCCATCAAA TGGTGATTGT GAAGCTCATA ACGAGGTTTG TAATGATTTT
AATGCATGTA CTGAAAATGT CTGTTCTCCA GTTAAAGTTG GTGCAGGTGT
TGGTGAATGT GTAACTACCA ATACAACATG TGCACCAACC ACAAACGTTG
ATAAATGTAA AAACTACCTT TGCGATTCTG AAAAAGGTTG TTATGAAACC
GATGTAGTTT GTCCAGATAG TGGAAATTGT AAAGTTGGTC ATTGTGATTC
CAAGGTAGGT TGCTCTTTGA AGCCACGTGT CTGTAAATCA CCAGCTTTTT
GCATCGTAGC AGAATGTGAT GAAACTGTTG GTTGCATTGC ATTTGAGAGA
CGTTGTGCAT CAAGTAATCC AAAATGTAAA GCAGGTATTT GTGTAAATGG
TACAACACCA GAAGAAGGTG AATGTGAATC TGTAAATTAT GATCCAAAAC
CATTTATTTG TCAAACTGGT GCTATAGTTT CTACTGCTGT AATTGCTGGT
GTAACTGTTG CTGGTGCTGT TGCTCTTGGT ATTTTCATTT ATGGTGGTAA
ACGTGGTTAT GATTATTGGA AAGAAAGTAG AAGCATTTCT ATGAGTTCTG
CTGTTTCAAG TCCAATGTAT GTTCCTTCTG CAAATGCTTC TGAAAATCCA
CTTTATATTC CAGAAGGAGA ATTATAAATT AAAAATAAAT AAAAAATTGT
ACTATATTAA ATATTTACCA AAATAGAACT CAAATACTCA AACAGGGTTA
TTGTAACAAA A

Translated Amino Acid Sequence Contig-U12286-1

LLAYWNKCQVNSCDKTTGNCKPENLKCPDRSNECLKNTGCDDLTGCKYVSICTDSCDKKG
NACVAGKCQQKTTSDCAAELDDNSCKVYSCNSTRGGCYSENKCKPDPTQICDVASCDDGA
CXIKTLPPDECNCGCKPNFCQKSNCVKNPSNNQXECS---

---CDAVAQKITHVPYDTCKGCMSCNPSNGDCEAHNEVCNDFNACTENVCSPVKVGAGVG
ECVTTNTTCAPTTNVDKCKNYLCDSEKGCYETDVVCPDSGNCKVGHCDSKVGCSLKPRVC
KSPAFCIVAECDETVGCIAFERRCASSNPKCKAGICVNGTTPEEGECESVNYDPKPFICQ
TGAIVSTAVIAGVTVAGAVALGIFIYGGKRGYDYWKESRSISMSSAVSSPMYVPSANASE
NPLYIPEGEL*iknk*kivly*iftkielkysnrvivtk

Homology Contig-U12286-1 vs CSM-Contig

Sequences producing significant alignments:                        (bits)  Value


Contig-U12286-1 (Contig-U12286-1Q) /CSM_Contig/Conti...  2343  0.0
Contig-U13087-1 (Contig-U13087-1Q) /CSM_Contig/Conti...    66  1e-10
Contig-U12833-1 (Contig-U12833-1Q) /CSM_Contig/Conti...    66  1e-10
Contig-U11582-1 (Contig-U11582-1Q) /CSM_Contig/Conti...    44  4e-04
Contig-U11413-1 (Contig-U11413-1Q) /CSM_Contig/Conti...    44  4e-04
Contig-U11698-1 (Contig-U11698-1Q) /CSM_Contig/Conti...    42  0.002
Contig-U10642-1 (Contig-U10642-1Q) /CSM_Contig/Conti...    42  0.002
Contig-U14191-1 (Contig-U14191-1Q) /CSM_Contig/Conti...    40  0.006
Contig-U13940-1 (Contig-U13940-1Q) /CSM_Contig/Conti...    40  0.006
Contig-U02066-1 (Contig-U02066-1Q) /CSM_Contig/Conti...    36  0.093

Homology Contig-U12286-1 vs DNA

Sequences producing significant alignments:                  (bits) Value  N


(BJ445713) Dictyostelium discoideum cDNA clone:ddv60l10, 3' ...  1459   0.0    1
(BJ437552) Dictyostelium discoideum cDNA clone:ddv34j16, 3' ...  1419   0.0    1
(BJ445882) Dictyostelium discoideum cDNA clone:ddv60n22, 3' ...  1413   0.0    1
(BJ438954) Dictyostelium discoideum cDNA clone:ddv39b04, 3' ...  1392   0.0    1
(BJ443810) Dictyostelium discoideum cDNA clone:ddv54o02, 3' ...  1360   0.0    2
(BJ444820) Dictyostelium discoideum cDNA clone:ddv57e17, 3' ...  1314   0.0    2
(BJ430097) Dictyostelium discoideum cDNA clone:ddv6g05, 3' e...  1285   0.0    1
(BJ438322) Dictyostelium discoideum cDNA clone:ddv37g16, 3' ...  1281   0.0    1
(BJ437658) Dictyostelium discoideum cDNA clone:ddv34o23, 3' ...  1275   0.0    1
(BJ429701) Dictyostelium discoideum cDNA clone:ddv4h15, 3' e...  1271   0.0    1

Homology Contig-U12286-1 vs Protein

Sequences producing significant alignments:                      (bits) Value


(Q86HT1) RecName: Full=Protein psiL; Flags: Precursor;  &AC11695...   416   0.0
(Q94494) RecName: Full=Protein psiH; Flags: Precursor;  &U67940_...   207   7e-87
(Q557E9) RecName: Full=Protein psiG; Flags: Precursor;  &AC11568...   162   1e-68
(Q54P69) RecName: Full=Protein psiM; Flags: Precursor;                191   4e-65
(Q54VS2) RecName: Full=Protein psiP; Flags: Precursor;                187   9e-46
(Q54G85) RecName: Full=Protein psiJ; Flags: Precursor;                108   2e-28
(Q54CH8) RecName: Full=Protein psiN; Flags: Precursor;                102   3e-27
A26838(A26838)prestalk protein precursor - slime mold (Dictyoste...    71   4e-23
(P11976) RecName: Full=Prestalk protein; AltName: Full=Extracell...    70   7e-23
(Q55FQ4) RecName: Full=Protein psiB; Flags: Precursor;                102   4e-20