Dictyostelium discoideum cDNA Contig-U12269-1

Assembled

Chromosomal Location of Contig-U12269-1

Sequence Contig-U12269-1

CATTTATTAA ATACTTTTAT TGTTAAAATT AAAAAAAATA TTTTACTAAT
AATAATTTTA TAATATATTA TAAAAAAAAA AAAAAAAAAA ATAAAATTAA
AACCTTCACC AAATTAATTA ATAAATATAT TTACATATAT AAATAAAAAT
TAAAAAATAA AGATGGAACA TGGAAATTCA TTGTGGGGAT TAAGAGATTG
TGTACCAATG TTAAAAGGTA TTGCATTAAT TGGTGGATCA ATGTTTGCAG
GTATTAGTAT TTATATTCAA ACTGTCGAAC ATCCAGCTCG TTCAACATTA
CCAACTGAAT TTGCAGTTAA TGAATGGCGT GAAAGTTTTA AAAAGGCCGC
TCCATTACAA TCTTCTCTTG CTGCAGTTTC TTGGTATCGC TTCGTTGCTT
ACTTTTGGCT CCATTGCAAA GGCATCCCTG CAAGACAATC AACAAAGTAA
TCGTCAAAGC CACAGAAGAT TCAGTTCGTC ATTGTTGCCA ATGTAATGGT
TTAGGTTGGT TGCTAAGTGG TGGTTTAATG CTTTCCATTA TTCCATTCAC
TTTATTAGCC ATTATGCCAG TTAATAAGAA ATTACAATCC AAAGAACTTG
ATACCTTTGC TGATGATACT CGTCAATTAT TAGCTCAATG GGGTGAATTA
CATTCAGTTC GTTCAGTTCT TTCACTCTCT GCGGTTGCAA TTATGGGTTA
CAAAATCTTT AGACACTCCC ATTTGTTAAT TAAATCTTAA AAACATGTTA
TCATTAAGAT GAAATTACTT TCATAATCAT TACCAATTTA AATTTTAAAA
TGATATTTTA TAAAATAAAA AATAAAATAA AATAATATAT ATAATTACAA
AAATTACAAA TAGAAAATAA ATAAATAAAT AAATAAAAAA AATTACAAAA
AGTAATTTCA GTTATTTTAT TAAAAAAAAA AA-------- --AAGGCCCC
CCCNCNNGNC CCNTCCCCAG GTTTCCCCCA CCCCCCCGGG GGTTCCCGTT
CCCTCCTTGT TGCCCACGTA CCGGTCTGGC GGGCGCTACA GTGGGGGCTC
ACCGCCTCCC CTTTTCCCCN CCCCCTTTTT GGCCCTTTTG CCCGTTCTTC
GGGACTTCCC CCCCCCGGGC CTTGGTCCCC TTGCGGGGGA TCCCCGCCAC
ATTTTTGGCC CCAGGGGGGG GCTTTCCTTC GGNNCGTTCC GTTTTTCCCC
CCCCCGCGGT GTGCACTTTG GGGTTCCCCC ATCTTTGGGC CCCCCCCTTT
GGTTTTTCCC CCTTCACCCC TGGTTTNCCT TTGGGGGGAA TTCCTTCCCT
TCCCCTTTCC CCCCCCCCTT TCCCGCGGCC CCTTTTTCCC CTCCCCCCTC
CCCTCCCCTT TTTTTTTTTT TTTCCCCCTT TCTTTTTTTT TTTTAAAAAA
AAAAAAAAAA AAAAAAAAAA AAAAAAAAAA AAAAAAAAAA AAAAAAAAAA
AAAAAAAAAA AAAAAAAAAA AAAAAAAAAA AAAAA

Translated Amino Acid Sequence Contig-U12269-1

hllntfivkikknilliiil*yiikkkkkkiklkpspn*liniftyinkn*kikmehgns
lwglrdcvpmlkgialiggsmfagisiyiqtvehparstlptefavnewresfkkaaplq
sslaavswyrfvayfwlhckgiparqstk*sskpqkiqfvivanvmv*vgc*vvv*cfpl
fhsly*plcqlirnynpknlipllmilvny*lngvnyiqfvqffhslrlqlwvtksldtp
ic*lnlknmlslr*nyfhnhyqfkf*ndil*nkk*nkiiyiitkitnrk*ink*IKKITK
SNFSYFIKKK---

---KAPPXXPSPGFPHPPGGSRSLLVAHVPVWRALQWGLTASPFPXPLFGPFARSSGLPP
PGPWSPCGGSPPHFWPQGGAFLRXVPFFPPPRCALWGSPIFGPPPLVFPPSPLVXLWGEF
LPFPFPPPLSRGPFFPSPLPSPFFFFFPLSFFFLKKKKKKKKKKKKKKKKKKKKKKKKKK
KKKK

Homology Contig-U12269-1 vs CSM-Contig

Sequences producing significant alignments:                        (bits)  Value


Contig-U12269-1 (Contig-U12269-1Q) /CSM_Contig/Conti...  1233  0.0
Contig-U12017-1 (Contig-U12017-1Q) /CSM_Contig/Conti...    44  4e-04
Contig-U12889-1 (Contig-U12889-1Q) /CSM_Contig/Conti...    38  0.027
Contig-U10320-1 (Contig-U10320-1Q) /CSM_Contig/Conti...    38  0.027
Contig-U07980-1 (Contig-U07980-1Q) /CSM_Contig/Conti...    38  0.027
Contig-U06999-1 (Contig-U06999-1Q) /CSM_Contig/Conti...    38  0.027
Contig-U04414-1 (Contig-U04414-1Q) /CSM_Contig/Conti...    36  0.11
Contig-U12899-1 (Contig-U12899-1Q) /CSM_Contig/Conti...    34  0.42
Contig-U12368-1 (Contig-U12368-1Q) /CSM_Contig/Conti...    34  0.42
Contig-U12257-1 (Contig-U12257-1Q) /CSM_Contig/Conti...    34  0.42

Homology Contig-U12269-1 vs DNA

Sequences producing significant alignments:                  (bits) Value  N


(C92816) Dictyostelium discoideum slug cDNA, clone SSF379.        664   0.0    4
(C92403) Dictyostelium discoideum slug cDNA, clone SSE766.        664   0.0    3
(C90262) Dictyostelium discoideum slug cDNA, clone SSI513.        664   0.0    3
(BJ384319) Dictyostelium discoideum cDNA clone:ddc49d04, 3' ...   634   0.0    3
(C90206) Dictyostelium discoideum slug cDNA, clone SSI247.        656   0.0    3
(AU262816) Dictyostelium discoideum vegetative cDNA clone:VS...   664   0.0    3
(C93153) Dictyostelium discoideum slug cDNA, clone SSM687.        632   0.0    3
(AU038237) Dictyostelium discoideum slug cDNA, clone SSH454.      664   0.0    3
(AU039155) Dictyostelium discoideum slug cDNA, clone SSM454.      664   0.0    3
(C89697) Dictyostelium discoideum slug cDNA, clone SSG154.        664   0.0    3

Homology Contig-U12269-1 vs Protein

Sequences producing significant alignments:                      (bits) Value


AC116957_86(AC116957|pid:none) Dictyostelium discoideum chromoso...   149   2e-72
CP001349_1382(CP001349|pid:none) Methylobacterium nodulans ORS 2...    49   6e-04
CP001389_2024(CP001389|pid:none) Rhizobium sp. NGR234, complete ...    48   8e-04
CP000738_2005(CP000738|pid:none) Sinorhizobium medicae WSM419, c...    45   0.005
AL591688_2147(AL591688|pid:none) Sinorhizobium meliloti 1021 com...    45   0.009
CP001349_3517(CP001349|pid:none) Methylobacterium nodulans ORS 2...    44   0.015