Dictyostelium discoideum cDNA Contig-U12260-1

Assembled

Chromosomal Location of Contig-U12260-1

Sequence Contig-U12260-1

CTCTATCACT ACTAAACAAA GAGGCGATCC ATTAATTAGA AGATTAATAG
AAAAGTTGGC AAAAGTGATG ATTTTAAATC GTTTACCAAT GAAGTATATG
GCTGCTTTTG GTATGGCTGC TCAACAACCT TATTCTGTGT TGGCATTGGT
TCGTAAACAT TCAACATCAA TTATAAAAAC TAGAAGAATG GTTATATCTC
GTTTGGCTGC ATCATTATCA ATGGCAAAGA ATTTAACCGA GTTTTATCCA
GAATCTTCAA TGCCTTACTT TTTATATGTA GTTAGTCATC GTGAGGATTT
TGAAAGGGAT GCTCCTGATT ACATTGAATC AGCATGTTAT TTAAACTTTT
TCATCGATCT ATTGGTAGAG GAAGCCGATA ACTATTCAAT CATTCATACT
ATCTTTACAA AGCTAAAGAG ATCAACTGAT GCACTCGATA AAAAATCAAA
GAATCATATT ATTGCTGCTG AATTGGGTCT TCAAATTTTA ACTCATCAAT
ATCAACAAAA GAAATGGAAA CCACAAAAAC ATCCTATTGT TATTGTTTTA
CCAGAGAAAT TCTATATCAT TCATGATGAT CAAGATGAAA TGTCAATCGA
TGATGAAGTT ACCTCAATTA AATTACCAAG TTTATTACCA AAAAGATTTA
AATTACCACC TTTACCTTCT ATTACTGATC AAAATAATAA TAATAATAAT
AATAATACTA ACTCAACCAA TAATGATGAA TCAGAAAAAG ATGAAAATAA
TAATAATAAA AATGATAATG ATAATGATAA TGATAATGAT GATAATTCCA
CTACAGCAGT ACCTCAAAAA TCAATAATAT CAAAACCTCC AGCCAAAAAA
GTATCAAAAA AAGCAGCAGC AAAACAAAAA TCACCAAAAA AGAAAACAAA
TAAAAAGAAA AAACAATCTA GTAGTGAAGA GGAAGTATCT AGTAGTGAAG
AGGAAGATGA AAGTCAAGAT GAAGAGGTCG AGAATTAAGG AGATAATTAT
ATT------- ---AAAAATA AAAATAAAAA TAAAAATAAA AATAAAAATA
AAAATAAATA ACAAGATCAA TAAAAATAAT AATAATAATA ANAAATAATA
ATTTTAATAA ATAATAAAAT AAATATTAAT AATAAAAAAT TAATAATAAA
AATAAAATGA TTTCATATTA TTTGTAAACA TAAAATCTAT ATCATTGTAT
TATGACTACA AAAAAAGAAT AAAAAACAAA AAATTAACAA AAAAATTAAT
AAATAAATAA AA

Translated Amino Acid Sequence Contig-U12260-1

lsllnkeaih*led**kswqk**f*ivyq*siwlllvwllnnlilcwhwfvniqhql*kl
eewlylvwlhhyqwqri*psfiqnlqcltfym*lvivrilkgmllitlnqhvi*tfssiy
w*rkpitiqsfilslqs*rdqlmhsiknqriillllnwvfkf*lininkrngnhknilll
lfyqrnsisfmmikmkcqsmmklpqlnyqvyyqkdlnyhlyllllikiiiiiiiiltqpi
mmnqkkmkiiiikmimimimimmiiplqqylknq*YQNLQPKKYQKKQQQNKNHQKRKQI
KRKNNLVVKRKYLVVKRKMKVKMKRSRIKEIII---

---KIKIKIKIKIKIKINNKINKNNNNNXK**f**iik*iliikn***k*ndfilfvnik
sislyydykkriknkkltkklink*

Homology Contig-U12260-1 vs CSM-Contig

Sequences producing significant alignments:                        (bits)  Value


Contig-U12260-1 (Contig-U12260-1Q) /CSM_Contig/Conti...  1352  0.0
Contig-U11267-1 (Contig-U11267-1Q) /CSM_Contig/Conti...    42  0.001
Contig-U12527-1 (Contig-U12527-1Q) /CSM_Contig/Conti...    36  0.089
Contig-U14794-1 (Contig-U14794-1Q) /CSM_Contig/Conti...    34  0.35
Contig-U14508-1 (Contig-U14508-1Q) /CSM_Contig/Conti...    34  0.35
Contig-U12214-1 (Contig-U12214-1Q) /CSM_Contig/Conti...    32  1.4
Contig-U06613-1 (Contig-U06613-1Q) /CSM_Contig/Conti...    32  1.4
Contig-U14467-1 (Contig-U14467-1Q) /CSM_Contig/Conti...    30  5.5
Contig-U13958-1 (Contig-U13958-1Q) /CSM_Contig/Conti...    30  5.5
Contig-U11224-1 (Contig-U11224-1Q) /CSM_Contig/Conti...    30  5.5

Homology Contig-U12260-1 vs DNA

Sequences producing significant alignments:                  (bits) Value  N


(BJ444026) Dictyostelium discoideum cDNA clone:ddv54p24, 3' ...  1291   0.0    2
(BJ438637) Dictyostelium discoideum cDNA clone:ddv38d05, 3' ...  1061   0.0    2
(AU074264) Dictyostelium discoideum slug cDNA, clone SSK176.      470   e-128  1
(C91405) Dictyostelium discoideum slug cDNA, clone SSK176.        101   7e-17  1
(FF727629) XABT42899.fwd Gateway compatible cien cDNA librar...    36   0.012  2
(FK086634) XABT140233.b1 Gateway compatible cien cDNA librar...    36   0.012  2
(FF743791) XABT54598.fwd Gateway compatible cien cDNA librar...    36   0.012  2
(FF708036) XABT29032.fwd Gateway compatible cien cDNA librar...    36   0.012  2
(FK053191) XABT119756.b1 Gateway compatible cien cDNA librar...    36   0.012  2
(FK145291) XABT177095.b1 Gateway compatible cien cDNA librar...    36   0.012  2

Homology Contig-U12260-1 vs Protein

Sequences producing significant alignments:                      (bits) Value


(A1L1F4) RecName: Full=Sister chromatid cohesion protein PDS5 ho...    46   0.002
(Q5U241) RecName: Full=Sister chromatid cohesion protein PDS5 ho...    45   0.006
AB023196_1(AB023196|pid:none) Homo sapiens mRNA for KIAA0979 pro...    45   0.007
AK299340_1(AK299340|pid:none) Homo sapiens cDNA FLJ61699 complet...    45   0.007
(Q4VA53) RecName: Full=Sister chromatid cohesion protein PDS5 ho...    44   0.009
BC126225_1(BC126225|pid:none) Homo sapiens PDS5, regulator of co...    44   0.009
CS300496_1(CS300496|pid:none) Sequence 4 from Patent EP1661986.        44   0.009
(Q6A026) RecName: Full=Sister chromatid cohesion protein PDS5 ho...    44   0.009
(Q29RF7) RecName: Full=Sister chromatid cohesion protein PDS5 ho...    44   0.009
(Q4KLU7) RecName: Full=Sister chromatid cohesion protein PDS5 ho...    44   0.009