Dictyostelium discoideum cDNA Contig-U12236-1

Assembled

Chromosomal Location of Contig-U12236-1

Sequence Contig-U12236-1

AAAATATAAA AAAGAAAATG TCAATAACAT TTAAGGTTTC AGATGTAGAA
TTTAATGAAT TTAAAGGAAA GGATTTTGAT CATAAACAAT TATATTTAGA
TCCATCAATG AGTTTTATTA AAACTCAACC AAAAGAGAGA AAAATAGTAA
GAACAAGTAT TAAAGAAGGA ATTTCAAAAA GTGTTGGAGG AAATTCTTTT
ATTTTATCAT CCCTTCAAGC ATATAATAAT CATCATGGTT TAACAATTAA
ACCTGATGAT GTTTGGATTG CAATTTTAGT ACAATTTTCA TTATATTTGA
ATGAAAACTC TGAAAAGTTA AGAAACAAGA TAGTTGATTT CGAAGGAAAG
AAACAATTAG AAGTAGTTGG TGGTGGTACA TTAATGACAG CAAACTATGA
ACAACTTACA AATTTAATGA CAAAACAAAT TGAAAAGAAT ATTAAAGATC
CATCAATTAG AGAATGGGCT AATAAACCAT TCACAACATC AACTCCAAAT
GATACAATGG CAGCTTCAAT TGCATTGATG GCATCAGTTA AAAATTTCTT
TGAATATAAA TGTCACTAAG ATGTTCTTTA CCAGAGGTTA CAGT------
----AACGCT CGGACCTTAC GAAATTCTAC TTTGAATTTC CCACCCGAGA
AACAGAACAA TAACAACAAT GTCTATAACA TTTAAAGTAG CAAATGTAAG
AGAGAGTGAA TTCAAAGGAT TAGATTTTTC ACACCAAAAA TTGTATGGTG
GTAAACCAAA TGAACCAGAA AGAAAAGTAG TTAGAAGTAG TATCAAAGAA
GGTATTTCAA AGAGTGTAGG CGGTAATTCA TTTGTTTTAA GTTCGTTCAT
TGCGTATTCA AATCACCATT CTTTAATCAT TCGTCCAGAT GATATTTGGA
TGGCAATTTT GGTACAATTC TCGTCATATT TAAATGCCAA CGCTGAACAA
TTAAGAAGTA AGATTGTTGA TTTCCAAGGA AAAAAACAAT TGGTAGTAAG
GGGTGGTGGA AAATTGATGA CAGCAGATTA TCAATCATTA ACCATTAGAA
TGACTCAAGA AATTGAAAAG AATATCAAAG ATCCATCAAT TAGAGAATGG
GCAAACAAAC CATTTTCAAC TACAACTCCA AACGATACAA TGGCAGCATC
AATTGCATTA ATGGCAACCG TTAAAAGTTA CTTTGACTTT AAAATGTGTT
TAATGTGTGG TTTACCAGAG GTAACATTAG AGGGTACCCT CGATGATTGG
GTCGATATAA AGAATAGAAT TGAAAAATTA AAAGAATTTG ATTTCAAAGA
TAATAAAGAT GGTTCAGTTA TGAAAGATTG GTCTGAAATG CTCTCACCAA
TCATTGATAA AATCATTAGT TCCGTCAATG GTAAACCAGA TATTGAATGG
TGGAATCGTA TTGCCAGTCA AGAAGGTGCA GGCTCAGGTC CACGTTATAT
CAGTGGTTGG ATTACAGCTT TCTGTGTTTT TGATAATGAT GGTAAATGGA
TGGGTAAAAA TAAAGAAAGA CATGAATTTG GAGGAGGAAA ATTCAACACT
GATTGGATCT TTGTCAATAC CAATGACGTC CCAAGAGGTT TCCTCTTTGT
ACCTGTTAAA ATCGATGATA ATGGTACTGA ATATAATACA GAATTCTTTG
CTGGTCATAT GGCTGTTTCA ACTTTAAATA ATTCAAAAAC AATTAAACCA
AATATTGATT GGTGTATTTT ACTTAGAATA AATAAATAAA TAAAAATAAA
AAAAATGGTT TTAATTATTT ATTATTTATT TTTTTTTTAA AAAAAAAAAA
AAAAAAAAAA AAAAAAAAAA AAAAAAAAAA AAAAAAAAAA AAAAAAAAAA
AAAAAAAAAA A

Translated Amino Acid Sequence Contig-U12236-1

ki*krkcq*hlrfqm*nlmnlkeriliinnyi*ihq*vllklnqkrek**eqvlkkefqk
vleeillfyhpfkhiiiimv*qlnlmmfglqf*ynfhyi*mktlks*etr*liskernn*
k*lvvvh**qqtmnnlqi**qnklkrilkihqlenglinhsqhqlqmiqwqlqlh*WHQL
KISLNINVTKMFFTRGYS---

---NARTLRNSTLNFPPEKQNNNNNVYNI*sskckre*iqrirfftpkivww*tk*trkk
ss*k*yqrryfkecrr*ficfkfvhcvfkspffnhssr*yldgnfgtilvifkcqr*tik
k*dc*fprkktigskgwwkiddsrlsiinh*ndsrn*keyqrsin*rmgkqtifnynskr
yngsincingnr*kll*l*nvfnvwftrgnirgypr*lgryke*n*kikri*fqr**rwf
syerlv*naltnh**nh*frqw*try*mvesycqsrrcrlrstlyqwldysflcf***w*
mdg*k*rkt*iwrrkiqh*ldlcqyq*rpkrfplctc*nr**wy*i*yrilcwsygcfnf
k*fknn*tky*lvyft*nk*inknkkngfnyllfifflkkkkkkkkkkkkkkkkkkkkkk
kk

Homology Contig-U12236-1 vs CSM-Contig

Sequences producing significant alignments:                        (bits)  Value


Contig-U12236-1 (Contig-U12236-1Q) /CSM_Contig/Conti...  3320  0.0
Contig-U11250-1 (Contig-U11250-1Q) /CSM_Contig/Conti...    46  1e-04
Contig-U01716-1 (Contig-U01716-1Q) /CSM_Contig/Conti...    46  1e-04
Contig-U00230-1 (Contig-U00230-1Q) /CSM_Contig/Conti...    44  5e-04
Contig-U13716-1 (Contig-U13716-1Q) /CSM_Contig/Conti...    42  0.002
Contig-U12763-1 (Contig-U12763-1Q) /CSM_Contig/Conti...    42  0.002
Contig-U12221-1 (Contig-U12221-1Q) /CSM_Contig/Conti...    42  0.002
Contig-U11826-1 (Contig-U11826-1Q) /CSM_Contig/Conti...    42  0.002
Contig-U11778-1 (Contig-U11778-1Q) /CSM_Contig/Conti...    42  0.002
Contig-U12110-1 (Contig-U12110-1Q) /CSM_Contig/Conti...    36  0.13

Homology Contig-U12236-1 vs DNA

Sequences producing significant alignments:                  (bits) Value  N


(BJ430626) Dictyostelium discoideum cDNA clone:ddv8b06, 3' e...  1328   0.0    1
(BJ432073) Dictyostelium discoideum cDNA clone:ddv17d16, 3' ...  1326   0.0    2
(BJ373712) Dictyostelium discoideum cDNA clone:ddc4l18, 3' e...  1312   0.0    2
(BJ375541) Dictyostelium discoideum cDNA clone:ddc19i02, 3' ...  1104   0.0    1
(AU038004) Dictyostelium discoideum slug cDNA, clone SSH147.     1086   0.0    2
(BJ342602) Dictyostelium discoideum cDNA clone:dda14d23, 3' ...   823   0.0    2
(BJ414728) Dictyostelium discoideum cDNA clone:ddv20a12, 5' ...   743   0.0    2
(BJ412346) Dictyostelium discoideum cDNA clone:ddv8b06, 5' e...   648   0.0    2
(BJ359554) Dictyostelium discoideum cDNA clone:ddc15h08, 5' ...   648   0.0    2
(BJ415770) Dictyostelium discoideum cDNA clone:ddv23m14, 5' ...   640   0.0    2

Homology Contig-U12236-1 vs Protein

Sequences producing significant alignments:                      (bits) Value


AM920431_1540(AM920431|pid:none) Penicillium chrysogenum Wiscons...   218   5e-55
AM920437_1895(AM920437|pid:none) Penicillium chrysogenum Wiscons...   187   1e-45
CU638743_122(CU638743|pid:none) Podospora anserina genomic DNA c...   149   4e-34
AE015928_4406(AE015928|pid:none) Bacteroides thetaiotaomicron VP...   142   3e-32
CU633900_662(CU633900|pid:none) Podospora anserina genomic DNA c...   139   5e-31
AM746676_7829(AM746676|pid:none) Sorangium cellulosum 'So ce 56'...   127   1e-27
CP000875_3836(CP000875|pid:none) Herpetosiphon aurantiacus ATCC ...   113   2e-23
CP000113_2189(CP000113|pid:none) Myxococcus xanthus DK 1622, com...   105   4e-21
(Q5UQ60) RecName: Full=Uncharacterized protein L662;  &AY653733_...    94   2e-17
AM746676_1988(AM746676|pid:none) Sorangium cellulosum 'So ce 56'...    73   4e-11