Dictyostelium discoideum cDNA Contig-U12223-1

Assembled

Chromosomal Location of Contig-U12223-1

NO HIT FOUND.

Sequence Contig-U12223-1

ATTAAATAAT AATTAAATAA TTAAAAAAAT GGAATTTTTA ATGACATTAG
TATTTTTAGT ATTATTGGTT GAAATTGTAT TCTGTACATT TTTTATGTTA
CCAGTTTCAA TGCACCTAAG AAAGAATGTT TACAATAAAT TAGATAAATT
ATTTGGTGGT CAAAATGCAA AGATCTTTTT AAAGGTATTG GCATTGTTAG
TGATCATTGT ATTTTGTGAT TCAATTGTAA ATTCATATAA TATCAACAAG
AAATTACAAT ACACCAGAAT TGACCGGAGC TAAATTTGAC AGACAAAATG
AATATACCCG TATGTTTAGA TATCAAAGAA ATTCATACAT TTGTGGTTTC
TGTCTCTATT TATTCTTTTT AATCTATCGT TCACAAGGTA TCATTAGTCA
ATTATCAAAT GTAGAAGCCT CAAAAACTGC CATTGAAAAG CAAACTAAAA
ATAATTTAAA TACCGTCGAA ACTCTCTTAT CGGAAAATGA AAAATTAAAA
ACTGAAATTA AAGACCTTAA AAAGATGGAA AAAGAACATA AAGCTATGAA
ATCTCAAGCT GAAAATACAA CCAAAGAATA TCTTAAACTC CAAGAAGAAT
ATAATCAACT TTTAGGTAAA AAACCAAAAA CTCAAAAGAA AGATGATTAA
TCATCTTAAA AATAATAATA ATAATAATTA ATTCATTATT ATTATTATTA
TTATCATTAT CATCATCAGA TTTAAATTTA TAAAAAAAAA TAAATAAAAA
AAAAAAAAAC TTATTATTAT TTTTTTACTA AAAAAAAAAA AAAAAAAAAA
AAAAAAAAAA AAAAAAAAAA AAAAAAAAAA AAAAAAAAAA AAAAAAAA--
--------AA TTAAAAAAAA AAAAAATTTT TNTTNTTTTT TTANTNTTTA
AAAAAAAAAA AAAAAAAAAA AAAAAAAAAA AAAAAAAAAA AAAAAAAAAA
AAAAAAAAAA AAAAAAAAAA AAAAAAAAAA AAAAAAAAAA AAAAAAAAAA
A

Translated Amino Acid Sequence Contig-U12223-1

*iiik*lkkwnf**h*yf*yywlklysvhflcyqfqct*ermftin*inylvvkmqrsf*
rywhc**slyfviql*ihiistrnyntpeltgakfdrqneytrmfryqrnsyicgfclyl
ffliyrsqgiisqlsnveasktaiekqtknnlntvetllseneklkteikdlkkmekehk
amksqaenttkeylklqeeynqllgkkpktqkkdd*ss*k*****lihyyyyyyhyhhqi
*iykkk*IKKKKTYYYFFTKKKKKKKKKKKKKKKKKKKKKKK---

---LKKKKIFXXFLXFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK

Homology Contig-U12223-1 vs CSM-Contig

Sequences producing significant alignments:                        (bits)  Value


Contig-U12223-1 (Contig-U12223-1Q) /CSM_Contig/Conti...   839  0.0
Contig-U13782-1 (Contig-U13782-1Q) /CSM_Contig/Conti...    40  0.005
Contig-U13722-1 (Contig-U13722-1Q) /CSM_Contig/Conti...    38  0.018
Contig-U13310-1 (Contig-U13310-1Q) /CSM_Contig/Conti...    38  0.018
Contig-U06262-1 (Contig-U06262-1Q) /CSM_Contig/Conti...    38  0.018
Contig-U11804-1 (Contig-U11804-1Q) /CSM_Contig/Conti...    36  0.071
Contig-U11156-1 (Contig-U11156-1Q) /CSM_Contig/Conti...    36  0.071
Contig-U10157-1 (Contig-U10157-1Q) /CSM_Contig/Conti...    36  0.071
Contig-U09703-1 (Contig-U09703-1Q) /CSM_Contig/Conti...    36  0.071
Contig-U06564-1 (Contig-U06564-1Q) /CSM_Contig/Conti...    36  0.071

Homology Contig-U12223-1 vs DNA

Sequences producing significant alignments:                  (bits) Value  N


(AU262201) Dictyostelium discoideum vegetative cDNA clone:VS...   605   0.0    2
(AU264738) Dictyostelium discoideum vegetative cDNA clone:VS...   363   0.0    3
(AU261362) Dictyostelium discoideum vegetative cDNA clone:VS...   363   e-172  3
(C94015) Dictyostelium discoideum slug cDNA, clone SSK705.        363   e-143  3
(AU062026) Dictyostelium discoideum slug cDNA, clone SLH256.      351   e-123  2
(AU073735) Dictyostelium discoideum slug cDNA, clone SSI190.      418   e-119  2
(AU038131) Dictyostelium discoideum slug cDNA, clone SSH311.      293   e-105  2
(AU072403) Dictyostelium discoideum slug cDNA, clone SSE426.      353   9e-93  1
(AU060374) Dictyostelium discoideum slug cDNA, clone SLJ523.      351   3e-92  1
(AU261952) Dictyostelium discoideum vegetative cDNA clone:VS...   163   6e-63  2

Homology Contig-U12223-1 vs Protein

Sequences producing significant alignments:                      (bits) Value


(Q54K74) RecName: Full=Endoplasmic reticulum transmembrane prote...   239   8e-62
BT078760_1(BT078760|pid:none) Lepeophtheirus salmonis Pacific fo...    77   1e-12
BT080943_1(BT080943|pid:none) Caligus clemensi clone ccle-evs-51...    73   1e-11
BT076915_1(BT076915|pid:none) Caligus rogercresseyi clone crog-e...    69   2e-10
BT077060_1(BT077060|pid:none) Caligus rogercresseyi clone crog-e...    67   1e-09
BC079182_1(BC079182|pid:none) Rattus norvegicus B-cell receptor-...    64   6e-09
DQ525635_1(DQ525635|pid:none) Mesocricetus auratus BAP31 mRNA, c...    64   8e-09
AL590148_4(AL590148|pid:none) Zebrafish DNA sequence from clone ...    64   1e-08
AK008043_1(AK008043|pid:none) Mus musculus adult male small inte...    63   1e-08
AK151641_1(AK151641|pid:none) Mus musculus bone marrow macrophag...    63   1e-08