Homology Contig-U12223-1 vs DNA
Query= Contig-U12223-1 (Contig-U12223-1Q) /CSM_Contig/Contig-U12223-1Q.Seq.d
(1001 letters)
Database: ddbj_A
108,600,042 sequences; 106,710,029,556 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value N
(AU262201) Dictyostelium discoideum vegetative cDNA clone:VS... 605 0.0 2
(AU264738) Dictyostelium discoideum vegetative cDNA clone:VS... 363 0.0 3
(AU261362) Dictyostelium discoideum vegetative cDNA clone:VS... 363 e-172 3
(C94015) Dictyostelium discoideum slug cDNA, clone SSK705. 363 e-143 3
(AU062026) Dictyostelium discoideum slug cDNA, clone SLH256. 351 e-123 2
(AU073735) Dictyostelium discoideum slug cDNA, clone SSI190. 418 e-119 2
(AU038131) Dictyostelium discoideum slug cDNA, clone SSH311. 293 e-105 2
(AU072403) Dictyostelium discoideum slug cDNA, clone SSE426. 353 9e-93 1
(AU060374) Dictyostelium discoideum slug cDNA, clone SLJ523. 351 3e-92 1
(AU261952) Dictyostelium discoideum vegetative cDNA clone:VS... 163 6e-63 2
(BJ339202) Dictyostelium discoideum cDNA clone:dda64c14, 5' ... 182 2e-41 1
(AU053705) Dictyostelium discoideum slug cDNA, clone SLJ523. 129 2e-25 1
(C94074) Dictyostelium discoideum slug cDNA, clone SSG374. 129 2e-25 1
(C90664) Dictyostelium discoideum slug cDNA, clone SSI891. 129 2e-25 1
(C90179) Dictyostelium discoideum slug cDNA, clone SSI190. 123 1e-23 1
(FI100343) MUGQ_CH252P477O12T7_CH0156_034 CHORI-252 Vervet M... 46 0.047 2
(AC133996) Rattus norvegicus clone CH230-265P19, WORKING DRA... 48 0.69 1
(AC094697) Rattus norvegicus clone CH230-5F4, *** SEQUENCING... 48 0.69 1
(AC094229) Rattus norvegicus clone CH230-3B15, WORKING DRAFT... 48 0.69 1
(CT005250) Leishmania major chromosome 11 strain Friedlin, c... 48 0.69 1
(DH702559) Rattus norvegicus DNA, BAC clone: RNB1-263E16, 3'... 48 0.69 1
(AC149638) Medicago truncatula chromosome 8 clone mth2-146j8... 40 1.7 4
(EU643473) Adineta vaga clone Av240_A TPR repeat containing ... 46 1.8 2
(BH157717) ENTTS54TF Entamoeba histolytica Sheared DNA Entam... 40 2.4 2
(EU643474) Adineta vaga clone Av240_B G-protein coupled rece... 46 2.7 1
(AC087231) Caenorhabditis briggsae cosmid CB034P13, complete... 46 2.7 1
(CR940347) Theileria annulata genomic DNA chromosome 1 part 1. 46 2.7 1
(ES347786) E03_PPMGBS_P22 P. papatasi adult female blood fed... 46 2.7 1
(AM179367) Zosterisessor ophiocephalus EST, clone Zo_ZOPD1_0... 46 2.7 1
(FK908199) EST_lsal_evj_939494 lsalevj mixed_tissue_mixed_st... 46 2.7 1
(FK908198) EST_lsal_evj_932582 lsalevj mixed_tissue_mixed_st... 46 2.7 1
(DX545888) GH_MBb0043P11f GH_MBb Gossypium hirsutum genomic ... 36 3.1 2
(CR759789) Zebrafish DNA sequence from clone CH211-153M1. 42 3.2 4
(AC178804) Strongylocentrotus purpuratus clone R3-22F23, WOR... 34 5.0 2
(AC180633) Strongylocentrotus purpuratus clone R3-3090K10, W... 34 5.1 2
(CU467620) Zebrafish DNA sequence from clone CH211-174E12. 42 6.1 4
(BM523654) sam86g11.y2 Gm-c1087 Glycine max cDNA clone SOYBE... 42 6.2 2
(EH222419) JGI_ABWZ3164.rev ABWZ Phakopsora pachyrhizi infec... 42 6.2 2
(BP528538) Nicotiana tabacum cDNA, clone: BY13389, primer: M... 36 6.8 2
(CR751229) Zebrafish DNA sequence from clone CH211-116I17 in... 40 8.1 2
>(AU262201) Dictyostelium discoideum vegetative cDNA clone:VSB721,
3' end single read.
Length = 596
Score = 605 bits (305), Expect(2) = 0.0
Identities = 305/305 (100%)
Strand = Plus / Plus
Query: 137 aaattagataaattatttggtggtcaaaatgcaaagatctttttaaaggtattggcattg 196
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 aaattagataaattatttggtggtcaaaatgcaaagatctttttaaaggtattggcattg 60
Query: 197 ttagtgatcattgtattttgtgattcaattgtaaattcatataatatcaacaagaaatta 256
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ttagtgatcattgtattttgtgattcaattgtaaattcatataatatcaacaagaaatta 120
Query: 257 caatacaccagaattgaccggagctaaatttgacagacaaaatgaatatacccgtatgtt 316
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 caatacaccagaattgaccggagctaaatttgacagacaaaatgaatatacccgtatgtt 180
Query: 317 tagatatcaaagaaattcatacatttgtggtttctgtctctatttattctttttaatcta 376
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 tagatatcaaagaaattcatacatttgtggtttctgtctctatttattctttttaatcta 240
Query: 377 tcgttcacaaggtatcattagtcaattatcaaatgtagaagcctcaaaaactgccattga 436
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tcgttcacaaggtatcattagtcaattatcaaatgtagaagcctcaaaaactgccattga 300
Query: 437 aaagc 441
|||||
Sbjct: 301 aaagc 305
Score = 129 bits (65), Expect(2) = 0.0
Identities = 65/65 (100%)
Strand = Plus / Plus
Query: 552 tctcaagctgaaaatacaaccaaagaatatcttaaactccaagaagaatataatcaactt 611
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 tctcaagctgaaaatacaaccaaagaatatcttaaactccaagaagaatataatcaactt 475
Query: 612 ttagg 616
|||||
Sbjct: 476 ttagg 480
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Number of Sequences: 108600042
Number of Hits to DB: 784,635,002
Number of extensions: 49620124
Number of successful extensions: 4077956
Number of sequences better than 10.0: 40
Length of query: 1001
Length of database: 106,710,029,556
Length adjustment: 24
Effective length of query: 977
Effective length of database: 104,103,628,548
Effective search space: 101709245091396
Effective search space used: 101709245091396
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
Dictyostelium discoideum cDNA Project Home