Dictyostelium discoideum cDNA Contig-U12216-1

Assembled

Chromosomal Location of Contig-U12216-1

Sequence Contig-U12216-1

AAACTGTTGC ATCTATATTA CCCTCAATAG AATTATCCGT TGCAATCAAA
GCAACCAATG ATTTTGATAA CATTGATGAT TTAGTTCAAT ACTTAATGAA
TTACACTGCA ACAAAAGATG ATAATGAAAT CTCAATCAAT AATAATAATA
TCAATAATAA TAACTATAAT AATATCAATA GTAATAGTAA TAGTAATAGT
AATAGTTATA GTAATAGTTA TAGTAATAGC AATGGCAATG GCAATGGCAA
TACAAACACA AACACAAATA TAAATATAGA TAATACTAAT AAGGTAAATG
ATGAACCAAT TAAAACTACT ACCACTACCT CAACAACTAC TACTACTACT
ACTACAAAAC CACCAACTGC AAATATAAAG GGTCAATTAG ATGATGAACA
AAGAGAAATC GTAAGATTAT TAGATGAAGA AATGAAATTA GAAAAAGAAA
GATTAATGTT AAAAGAACAA CAAGAAAAAG AATCAATGGC TTTTATTTTA
TCAGAATTTA AAGATGATAT TGATGTTGAT AAAAATAATG AAAATAATAA
TAAAAATGAT TCAGAATATA TTAAAAGATT ATTAGAGCAA GAACAAAATG
AATTAGAAAG AAAAAGAAGA GATGAAGAAT TTAAGGAGAA GGTAATGTTA
AATAGATACT TGGAAGAAGA GAAAATTAAA AAGGATTTAG AATTGGAGAA
TAAGAGATAC GCTTGTGAGA TTTGTTTTAG TGATGATCTT AAAATTGACC
AAATGTATAC ATTAGATGAT TGTCATCATC GTTTCTGTAA AGAATGTCTT
TCTCAACATT TCAAGAGTAA AATATTTGAT GGTGATTGTA AATCAATTCA
ATGTCCAGAT ACAAAATGTC GTAGATTGGT TAATTATCAA GAGATTAAAC
ATAATGTCGA CAAGATAACA ATGGCAAAAT ATGAAGATTT CTTATTAAAA
ACCACTTTGG AAGAAGATCC AAATTCTAGA TTTTGTCCAC GTCCAAATTG
TAATAACGCT ATGATTGGTG ACTCTGATAC TGTAACTATG ATCATTTGTA
CAAATGAATC TTGTAGATAT ACTTTTTGCT TTAATTGTAA ATCAGAATGG
CATAAAGATA TGACTTGTAA ACAATGGAGC GAATTCAAAG TTTTAAAAGA
GACATCAAAC CAAAGATTCG AAGAATGGGC AAGAGAAAAC ACTAAACCTT
GTCCAAAATG TAAATCAAAG ATTGAAAAAG ATGGTGGTTG TAATCATATG
ACCTGTAAAT TATGCAAACA TCAATTTTGT TGGTTATGTT TGGATGTATA
TACTAAAACT CATTTTAGTG GTGGAAAATG TAAACAAAAC TCTTAAACAA
AAAAAAAAAT AAAAAAAAAA AAAT------ ----TAAAAA TTTTAAAATA
ATAATAAAAT AATAATAAAA AAGATAAAAT AGTTATGAAT AATATTTTAG
TGAACTGTAA TTTTAATTTG ATTAAAAAAA AAAAAATAAT AATAATAAAA
AATAATAATA AAATAAAAAT TTAATAAAGA TAAAATAGTT ATCAAAAA

Translated Amino Acid Sequence Contig-U12216-1

ncciyitlnriircnqsnq*f**h**fssilnelhcnkr***nlnq***yq***l**yq*
********l***l***qwqwqwqykhkhkykyr*y**gk**tn*nyyhylnnyyyyyykt
tnckykgsir**tkrnrkiir*rneirkrkinvkrttrkringfyfiri*r*y*c**k**
k***k*friy*kiirartk*irkkkkr*ri*gegnvk*ilgrren*kgfrige*eirl*d
lf***s*n*pnvyir*lsssfl*rmsfstfqe*ni*w*l*insmsrykms*ig*lsrd*t
*crqdnngki*rfliknhfgrrskf*ilstskl**rydw*l*ycnydhlyk*il*iyfll
*l*irma*rydl*tmeriqsfkrdikpkirrmgkrkh*tlskm*ikd*krwwl*sydl*i
mqtsillvmfgciy*nsf*wwkm*TKLLNKKKNKKKK---

---KNFKIIIK***kr*nsye*yfsel*f*fd*kkknnnnkk***nknlikik*lsk

Homology Contig-U12216-1 vs CSM-Contig

Sequences producing significant alignments:                        (bits)  Value


Contig-U12216-1 (Contig-U12216-1Q) /CSM_Contig/Conti...  1568  0.0
Contig-U10529-1 (Contig-U10529-1Q) /CSM_Contig/Conti...    58  3e-08
Contig-U13940-1 (Contig-U13940-1Q) /CSM_Contig/Conti...    50  7e-06
Contig-U10856-1 (Contig-U10856-1Q) /CSM_Contig/Conti...    48  3e-05
Contig-U14287-1 (Contig-U14287-1Q) /CSM_Contig/Conti...    40  0.007
Contig-U00917-1 (Contig-U00917-1Q) /CSM_Contig/Conti...    40  0.007
Contig-U13650-1 (Contig-U13650-1Q) /CSM_Contig/Conti...    38  0.028
Contig-U09163-1 (Contig-U09163-1Q) /CSM_Contig/Conti...    38  0.028
Contig-U12820-1 (Contig-U12820-1Q) /CSM_Contig/Conti...    36  0.11
Contig-U12006-1 (Contig-U12006-1Q) /CSM_Contig/Conti...    36  0.11

Homology Contig-U12216-1 vs DNA

Sequences producing significant alignments:                  (bits) Value  N


(C91572) Dictyostelium discoideum slug cDNA, clone SSK460.       1294   0.0    1
(AU074353) Dictyostelium discoideum slug cDNA, clone SSK460.      238   6e-58  1
(AU072126) Dictyostelium discoideum slug cDNA, clone SSD477.       90   3e-13  1
(C84683) Dictyostelium discoideum slug cDNA, clone SSD477.         82   8e-11  1
(AM628627) Entamoeba dispar GSS, clone dispar2d03.q1k.             40   1e-07  3
(AM633769) Entamoeba dispar GSS, clone dispar108d06.p1k.           40   1e-07  3
(BJ376410) Dictyostelium discoideum cDNA clone:ddc28m08, 3' ...    50   3e-07  2
(BJ351236) Dictyostelium discoideum cDNA clone:dda42c13, 3' ...    50   3e-07  2
(AZ673893) ENTIS32TF Entamoeba histolytica Sheared DNA Entam...    34   2e-05  3
(BH159929) ENTTI42TR Entamoeba histolytica Sheared DNA Entam...    34   2e-05  3

Homology Contig-U12216-1 vs Protein

Sequences producing significant alignments:                      (bits) Value


AM920437_426(AM920437|pid:none) Penicillium chrysogenum Wisconsi...   146   2e-33
DQ665646_1(DQ665646|pid:none) Gibberella zeae RING-5 mRNA, compl...   145   4e-33
BC099304_1(BC099304|pid:none) Xenopus laevis hypothetical protei...   145   4e-33
BC084251_1(BC084251|pid:none) Xenopus laevis hypothetical LOC495...   143   2e-32
AP003948_1(AP003948|pid:none) Oryza sativa Japonica Group genomi...   142   3e-32
(Q9P3U4) RecName: Full=Uncharacterized RING finger protein C328....   142   4e-32
(Q9LVW9) RecName: Full=Putative E3 ubiquitin-protein ligase ARI4...   141   6e-32
BT072513_1(BT072513|pid:none) Salmo salar clone ssal-rgf-528-167...   139   3e-31
AP007155_312(AP007155|pid:none) Aspergillus oryzae RIB40 genomic...   139   3e-31
BC133211_1(BC133211|pid:none) Xenopus laevis hypothetical protei...   139   4e-31