Dictyostelium discoideum cDNA Contig-U12188-1

Assembled

Chromosomal Location of Contig-U12188-1

Sequence Contig-U12188-1

AATTGGTTAA ACAGATAAAG TTATCAAAAG TTTTTAAACA ACAATCTATT
AATCACTACT CTGGGGAGTT TAAAAAGGTT CAAGACGAAT TCCATGTCTA
TAAACAATTG ATTGAAGAGC GTAGATTATA TTTATTGAAA TTCATAGAGA
ATCAATTCAA ATCCGAGCAA TTACAATTGG ATGAGCAAAG TAAAACCTTG
GAAAATCAAG CAGATATCAT AAAGAAATGT TTAACAGATA TTAAATCCCA
AGATAAAAAT AAATTAAAAA TAGTTAGAAA CCTCTCAAAA ATTAATATTA
AATTAACG-- --------CG AAAATAGTTG TACCATTGAA ATCGTTTAAA
ACAAATTGCT CAGCTTGTTT CACAAGTAGT TTTAACTCTG CCGCCACTTC
TTCCACCACT GTTGCGAATT ATGAAATGTT TTTAATTGGT GGTATCAATC
ATAAATCTAA AGATCTTTTA AAAGAAATAG ATAAATATAA TTTACAAACC
AACAAATACG AACCAATGGG TTGCAACATT ATCAAAACCT AAATATGGTT
GTTTAACTTG TTTCGATGGG TCTCGTTATA TTTATATCTT TGGTGGTATT
TTCAAATCAC TACAATTAAG TAGAGCTTTC ATTGAAATTG AAAGATTGGA
TATCACCACC AATAAATGTG AAATCATATC AAAGTTTCAA GATCCTGATC
TTTTAGATTT CAGTAAAAGC CCATTAATTG CATGTCATTT TCATTCAAAC
TTTATTTATT ACTTGACCAA TAAATCATTC AAAAGATTTA ATCTTTCCAA
GAATACTTTT GAAAATTTGG ATTTCCCAAA TCCAACACTA TATGGCGATG
TTGCCAATAT TAATGGTTCA ATATCTTTGA TGTACGATTC TGGTAGATTC
ATTCTATTAT TTAATGATAA TATTTTCCTA TTCCCACTCT CTCAATTAAA
ACCTACTGAT GTTGCTCCAT TGAAATGGTA TCCAAAATAT ACTAAAATTA
ACTCTACTGA TTTCACCTCC TCTTCAATGT CTTGCTTAAA TTTAATTGGT
TCAAAACAAT CTTGGCAACA ACAATCTCAA AATCCTTCTT ATTTAGTTCA
AAACTTACAT GGTTTATTAA TTTATAATGA AAAGCATTAA AAAAAAAAGA
AAAAAAAAAA AAACAACAAC ACCTGTATAT AAATTCTTTT TTTAAATTAC
CTCTATCATA TCATTTATTT TTAATAAAAT AAAAATTATG TAAATTTCAT
AATTTTTTTT TTACTCAAAA TTAAAAAAAA AAAAAAAAAA AAAAAAAAAA
AAAAAAAAAT AAAAAA

Translated Amino Acid Sequence Contig-U12188-1

LVKQIKLSKVFKQQSINHYSGEFKKVQDEFHVYKQLIEERRLYLLKFIENQFKSEQLQLD
EQSKTLENQADIIKKCLTDIKSQDKNKLKIVRNLSKINIKLT---

---KIVVPLKSFKTNCSACFTSSFNSAATSSTTVANYEMFLIGGINHKSKDLLKEIDKYN
LQTNKYEPMGCNIIKT*iwlfnlfrwvslylylwwyfqittik*sfh*n*kigyhhq*m*
nhikvsrs*sfrfq*kpincmsfsfklyllldq*iiqki*sfqeyf*kfgfpksntiwrc
cqy*wfnifdvrfw*ihsii***yfpiptlsikty*ccsiemvskiy*n*ly*fhllfnv
llkfnwfktilattisksflfsskltwfinl**kalkkkekkkkqqhlyinsffklplsy
hlflik*klckfhnffftqn*kkkkkkkkkkknkk

Homology Contig-U12188-1 vs CSM-Contig

Sequences producing significant alignments:                        (bits)  Value


Contig-U12188-1 (Contig-U12188-1Q) /CSM_Contig/Conti...  2196  0.0
Contig-U05196-1 (Contig-U05196-1Q) /CSM_Contig/Conti...    42  0.002
Contig-U14058-1 (Contig-U14058-1Q) /CSM_Contig/Conti...    40  0.006
Contig-U03395-1 (Contig-U03395-1Q) /CSM_Contig/Conti...    40  0.006
Contig-U11427-1 (Contig-U11427-1Q) /CSM_Contig/Conti...    38  0.024
Contig-U02544-1 (Contig-U02544-1Q) /CSM_Contig/Conti...    38  0.024
Contig-U01980-1 (Contig-U01980-1Q) /CSM_Contig/Conti...    38  0.024
Contig-U14000-1 (Contig-U14000-1Q) /CSM_Contig/Conti...    36  0.093
Contig-U13472-1 (Contig-U13472-1Q) /CSM_Contig/Conti...    36  0.093
Contig-U13032-1 (Contig-U13032-1Q) /CSM_Contig/Conti...    36  0.093

Homology Contig-U12188-1 vs DNA

Sequences producing significant alignments:                  (bits) Value  N


(BJ356233) Dictyostelium discoideum cDNA clone:dda59n13, 3' ...   854   0.0    2
(BJ354240) Dictyostelium discoideum cDNA clone:dda53b03, 3' ...   728   0.0    2
(BJ408683) Dictyostelium discoideum cDNA clone:dds46i18, 3' ...   993   0.0    2
(BJ379566) Dictyostelium discoideum cDNA clone:ddc35d11, 3' ...   737   0.0    2
(BJ403209) Dictyostelium discoideum cDNA clone:dds24l08, 3' ...  1045   0.0    1
(BJ385085) Dictyostelium discoideum cDNA clone:ddc51c21, 3' ...   938   0.0    1
(BJ353919) Dictyostelium discoideum cDNA clone:dda51l20, 3' ...   696   0.0    2
(BJ383274) Dictyostelium discoideum cDNA clone:ddc52o09, 3' ...   729   0.0    2
(BJ357364) Dictyostelium discoideum cDNA clone:dda63g09, 3' ...   791   0.0    1
(BJ384249) Dictyostelium discoideum cDNA clone:ddc48d20, 3' ...   593   e-165  1

Homology Contig-U12188-1 vs Protein

Sequences producing significant alignments:                      (bits) Value


AL111168_129(AL111168|pid:none) Campylobacter jejuni subsp. jeju...    37   1.6
CP000812_35(CP000812|pid:none) Thermotoga lettingae TMO, complet...    37   2.1
AF499596_28(AF499596|pid:none) Phthorimaea operculella granulovi...    36   2.7
AM295250_2168(AM295250|pid:none) Staphylococcus carnosus subsp. ...    36   3.5
(Q59031) RecName: Full=Uncharacterized protein MJ1637; Flags: Pr...    36   3.5
CR548612_182(CR548612|pid:none) Paramecium tetraurelia macronucl...    36   3.5
T33291(T33291)hypothetical protein F26D11.6 - Caenorhabditis ele...    35   4.6
CP001393_1103(CP001393|pid:none) Anaerocellum thermophilum DSM 6...    35   4.6
AE016819_936(AE016819|pid:none) Ashbya gossypii (= Eremothecium ...    35   4.6
CP001102_1334(CP001102|pid:none) Candidatus Amoebophilus asiatic...    35   4.6