Dictyostelium discoideum cDNA Contig-U12181-1

Assembled

Chromosomal Location of Contig-U12181-1

Sequence Contig-U12181-1

ATTGAACAAT TTGTAGAGGT ACGTCCAACT GAAACTAGAT TTAGACGTTT
AATAGAATTG CTATCGATTT GGTATCATAA AGGTCAGATT TTAATCTTTA
CCAATCGTCA AGAGACCACC GACAATCTAT ATCGTCAACT TTCAAACTCT
CAATATCAAT GTCTATCATT ACATGGTAGT AAAGATCAAA CCGATCGTGA
TGAAACCATT AGTGACTTTA AAAATAAGGT TAAAACCATT TTAATCGCTA
CACCATTGGC ATCACGTGGT TTGGATATCA AAGATTTAAA TCTTGTGGTT
AATTTCGATT GCCCTGATCA TTTGGAAGAT TATGTTCATA GGGTAGGTAG
AACTGGTAGA GCAGGAAATC GTGGTACTGC TTATACATTT ATCACACCCG
ACGAAGAGAG ATTCTCTTCG TCAATCATTA AAGCTTTGGA ACAATCTGGT
TCAAAAGTAC CCGATGAACT TAGAAAATTG AATGATACCT ACGAGAAAAA
GAGAAAAGAA GGTAAGGATG TACTATTGGC ACCAACCGGT TTCACTGGTA
GAGGTCATAA ATTTGATGCT GCCGAAGAGG ATAAAAAGAA TATTGAAAGA
AAACAACAAA GAAAAGCATA TGGTATCGAA GAGGAAGAAG AAGAAGAGGA
TGAAGA---- ------CTGA AAAGGAGAAA TTGGCCGCTG CTTCCGCTGA
AAAAGAAAAA CAATTATTAT CTGAAAAAGA AAAATTGGAT CCTGCTACCA
CTAATACTAT CGTCATACCT GGTGTAGATG GTACAATCAT TACACCTTCT
TCATTACTTC AAACCGATCC TTCAGTTCCT GTGGGTCAAC AGGCTATCAA
TCAAATATTT GGTATTTCAC AAGTTACCTC CTCCGAAGAA GCAATTAAAA
AACTTCAATT GGCCGCTCAA TTAGGTATGA AAGGTAATAT TCAAAAATTA
AATAATCAAA TAACTCCATT AAATCAAACT CATTTCATTG AAGAATTAGA
AATTAATGAT TATTCTCAAC AAGCTCGTTG GAAAGTTACT CATAAAGATG
CTTTACTTGA AATTACCAAT TTTACAAATA CTACAATTAC AACAAAAGGT
ACATTCTTTC CACCAAATAA AATACCAGCT CCAGGTGAAA GAAAATTATA
TTTATATATT GAAGGTCCAT CTGATGCATC TGTCAAAAAT GCAAAATCTG
ATATTAAAAA GATTCTCGAC GAAGTTCAAT CAACTCATCA AAGTACTGGA
AAGTATTCTG TATTTTAATT TTATTTATTA C

Translated Amino Acid Sequence Contig-U12181-1

IEQFVEVRPTETRFRRLIELLSIWYHKGQILIFTNRQETTDNLYRQLSNSQYQCLSLHGS
KDQTDRDETISDFKNKVKTILIATPLASRGLDIKDLNLVVNFDCPDHLEDYVHRVGRTGR
AGNRGTAYTFITPDEERFSSSIIKALEQSGSKVPDELRKLNDTYEKKRKEGKDVLLAPTG
FTGRGHKFDAAEEDKKNIERKQQRKAYGIEEEEEEEDE---

---EKEKLAAASAEKEKQLLSEKEKLDPATTNTIVIPGVDGTIITPSSLLQTDPSVPVGQ
QAINQIFGISQVTSSEEAIKKLQLAAQLGMKGNIQKLNNQITPLNQTHFIEELEINDYSQ
QARWKVTHKDALLEITNFTNTTITTKGTFFPPNKIPAPGERKLYLYIEGPSDASVKNAKS
DIKKILDEVQSTHQSTGKYSVF*fyll

Homology Contig-U12181-1 vs CSM-Contig

Sequences producing significant alignments:                        (bits)  Value


Contig-U12181-1 (Contig-U12181-1Q) /CSM_Contig/Conti...  1324  0.0
Contig-U11893-1 (Contig-U11893-1Q) /CSM_Contig/Conti...    52  2e-06
Contig-U13964-1 (Contig-U13964-1Q) /CSM_Contig/Conti...    50  6e-06
Contig-U13660-1 (Contig-U13660-1Q) /CSM_Contig/Conti...    50  6e-06
Contig-U12479-1 (Contig-U12479-1Q) /CSM_Contig/Conti...    50  6e-06
Contig-U10818-1 (Contig-U10818-1Q) /CSM_Contig/Conti...    50  6e-06
Contig-U11129-1 (Contig-U11129-1Q) /CSM_Contig/Conti...    46  9e-05
Contig-U11444-1 (Contig-U11444-1Q) /CSM_Contig/Conti...    44  4e-04
Contig-U11038-1 (Contig-U11038-1Q) /CSM_Contig/Conti...    44  4e-04
Contig-U10817-1 (Contig-U10817-1Q) /CSM_Contig/Conti...    44  4e-04

Homology Contig-U12181-1 vs DNA

Sequences producing significant alignments:                  (bits) Value  N


(X81823) D.discoideum Hel2A mRNA for RNA helicase.               1154   0.0    1
(BJ440552) Dictyostelium discoideum cDNA clone:ddv44e03, 3' ...  1015   0.0    3
(AU053522) Dictyostelium discoideum slug cDNA, clone SLI836.     1031   0.0    1
(AU033665) Dictyostelium discoideum slug cDNA, clone SLB286.      860   0.0    1
(AU034591) Dictyostelium discoideum slug cDNA, clone SLC582.      718   0.0    1
(AU062270) Dictyostelium discoideum slug cDNA, clone SLI836.      553   e-153  1
(CX580418) TTE00023246 Amplicon Express - Conjugative Form T...    66   4e-06  1
(CD450617) USDA-FP_102580 Adult Alate Brown Citrus Aphid Tox...    64   1e-05  1
(AZ667866) ENTIH07TR Entamoeba histolytica Sheared DNA Entam...    60   2e-04  1
(AZ548552) ENTDN95TR Entamoeba histolytica Sheared DNA Entam...    60   2e-04  1

Homology Contig-U12181-1 vs Protein

Sequences producing significant alignments:                      (bits) Value


AC115598_49(AC115598|pid:none) Dictyostelium discoideum chromoso...   389   0.0
S53814(S53814) DEAD box protein - slime mold (Dictyostelium disc...   389   e-153
(Q8H0U8) RecName: Full=DEAD-box ATP-dependent RNA helicase 42;  ...   198   4e-49
CR954209_78(CR954209|pid:none) Ostreococcus tauri strain OTTH059...   196   2e-48
(Q84UQ1) RecName: Full=DEAD-box ATP-dependent RNA helicase 42;  ...   189   2e-46
(Q4TVV3) RecName: Full=Probable ATP-dependent RNA helicase DDX46...   179   1e-43
(Q7L014) RecName: Full=Probable ATP-dependent RNA helicase DDX46...   179   2e-43
AB018344_1(AB018344|pid:none) Homo sapiens mRNA for KIAA0801 pro...   179   2e-43
AK129220_1(AK129220|pid:none) Mus musculus premature mRNA for mK...   179   2e-43
BC092240_1(BC092240|pid:none) Mus musculus DEAD (Asp-Glu-Ala-Asp...   179   2e-43