Homology Contig-U12158-1 vs Protein
Query= Contig-U12158-1 (Contig-U12158-1Q) /CSM_Contig/Contig-U12158-1Q.Seq.d
(1887 letters)
Database: nrp_B
3,236,559 sequences; 1,051,180,864 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
(Q54U61) RecName: Full=Protein transport protein SEC24; 592 e-167
BT070805_1(BT070805|pid:none) Picea sitchensis clone WS02750_N05... 264 1e-68
CR855030_5(CR855030|pid:none) Oryza sativa genomic DNA, chromoso... 260 1e-67
AL662964_17(AL662964|pid:none) Oryza sativa genomic DNA, chromos... 260 1e-67
AC012395_23(AC012395|pid:none) Arabidopsis thaliana chromosome I... 249 2e-64
CP001574_315(CP001574|pid:none) Micromonas sp. RCC299 chromosome... 233 2e-59
AM910993_97(AM910993|pid:none) Plasmodium knowlesi strain H chro... 231 9e-59
CP001141_71(CP001141|pid:none) Phaeodactylum tricornutum CCAP 10... 227 1e-57
(Q1E6U9) RecName: Full=Protein transport protein SEC24; 218 8e-55
(A2QSG6) RecName: Full=Protein transport protein sec24; &AM2701... 216 3e-54
(Q4WLP1) RecName: Full=Protein transport protein sec24; 214 9e-54
BC057355_1(BC057355|pid:none) Mus musculus Sec24 related gene fa... 214 1e-53
AK152339_1(AK152339|pid:none) Mus musculus bone marrow macrophag... 214 1e-53
AK029139_1(AK029139|pid:none) Mus musculus 10 days neonate skin ... 213 1e-53
(Q2ULI0) RecName: Full=Protein transport protein sec24; &AP0071... 213 2e-53
(A6QNT8) RecName: Full=Protein transport protein Sec24A; AltName... 213 3e-53
(A1CUC3) RecName: Full=Protein transport protein sec24; 212 3e-53
AK304060_1(AK304060|pid:none) Homo sapiens cDNA FLJ61651 complet... 212 4e-53
(O95487) RecName: Full=Protein transport protein Sec24B; AltName... 212 4e-53
(O95486) RecName: Full=Protein transport protein Sec24A; AltName... 212 4e-53
AK304234_1(AK304234|pid:none) Homo sapiens cDNA FLJ54322 complet... 212 4e-53
AJ131244_1(AJ131244|pid:none) Homo sapiens mRNA for Sec24 protei... 212 4e-53
AL645602_14(AL645602|pid:none) Mouse DNA sequence from clone RP2... 210 2e-52
CU607053_35(CU607053|pid:none) Podospora anserina genomic DNA ch... 207 8e-52
(Q86ZK8) RecName: Full=Protein transport protein SEC24; &BX0887... 207 8e-52
(Q4P9K4) RecName: Full=Protein transport protein SEC24; 206 2e-51
(Q2HH63) RecName: Full=Protein transport protein SEC24; 203 2e-50
(A4QUL1) RecName: Full=Protein transport protein SEC24; 196 2e-48
(Q9UUI5) RecName: Full=Protein transport protein sec24; &AL1098... 193 2e-47
(Q6C2T4) RecName: Full=Protein transport protein SEC24; &CR3821... 189 4e-46
(Q0PVD8) RecName: Full=Protein transport protein SEC24; &DQ6832... 187 1e-45
(Q5KMW6) RecName: Full=Protein transport protein SEC24; &AE0173... 184 7e-45
AE017342_26(AE017342|pid:none) Cryptococcus neoformans var. neof... 184 7e-45
(Q9M081) RecName: Full=Putative protein transport protein Sec24-... 183 2e-44
(Q9M291) RecName: Full=Protein transport protein Sec24-like CEF;... 181 6e-44
BT064480_1(BT064480|pid:none) Zea mays full-length cDNA clone ZM... 181 8e-44
(Q875Q0) RecName: Full=Protein transport protein SEC24; Flags: F... 179 3e-43
AL138641_2(AL138641|pid:none) Arabidopsis thaliana DNA chromosom... 177 9e-43
AE013599_979(AE013599|pid:none) Drosophila melanogaster chromoso... 172 3e-41
AM920427_1583(AM920427|pid:none) Penicillium chrysogenum Wiscons... 168 7e-40
CU928171_406(CU928171|pid:none) Kluyveromyces thermotolerans str... 167 2e-39
BC081230_1(BC081230|pid:none) Xenopus laevis hypothetical protei... 167 2e-39
(Q875V8) RecName: Full=Protein transport protein SEC24-1; &AY14... 164 8e-39
(P40482) RecName: Full=Protein transport protein SEC24; AltName:... 164 1e-38
(Q6FWD3) RecName: Full=Protein transport protein SEC24-2; &CR38... 164 1e-38
(Q876F5) RecName: Full=Protein transport protein SEC24-2; &AY14... 163 2e-38
AB383977_1(AB383977|pid:none) Synthetic construct DNA, clone: pF... 162 5e-38
(Q6BT80) RecName: Full=Protein transport protein SEC24; &CR3821... 160 2e-37
AK001390_1(AK001390|pid:none) Homo sapiens cDNA FLJ10528 fis, cl... 160 2e-37
AK291765_1(AK291765|pid:none) Homo sapiens cDNA FLJ78676 complet... 160 2e-37
BC035761_1(BC035761|pid:none) Homo sapiens SEC24 family, member ... 160 2e-37
(Q5AQ76) RecName: Full=Protein transport protein SEC24; 158 6e-37
(Q6CLE0) RecName: Full=Protein transport protein SEC24; &CR3821... 158 7e-37
BC067020_1(BC067020|pid:none) Mus musculus Sec24 related gene fa... 157 1e-36
BC168663_1(BC168663|pid:none) Rattus norvegicus similar to SEC24... 156 3e-36
(P53992) RecName: Full=Protein transport protein Sec24C; AltName... 154 1e-35
AK299826_1(AK299826|pid:none) Homo sapiens cDNA FLJ60345 complet... 154 1e-35
CR860827_1(CR860827|pid:none) Pongo abelii mRNA; cDNA DKFZp469D1... 154 1e-35
CP000080_22(CP000080|pid:none) Leishmania major strain Friedlin ... 153 2e-35
CR859229_1(CR859229|pid:none) Pongo abelii mRNA; cDNA DKFZp459J1... 152 3e-35
H88859(H88859)protein ZC518.2 [imported] - Caenorhabditis elegans 152 5e-35
CP001577_61(CP001577|pid:none) Micromonas sp. RCC299 chromosome ... 149 3e-34
AM502247_38(AM502247|pid:none) Leishmania infantum chromosome 29. 149 3e-34
BC082352_1(BC082352|pid:none) Xenopus laevis MGC80413 protein, m... 146 2e-33
AM494966_23(AM494966|pid:none) Leishmania braziliensis chromosom... 146 2e-33
CU633865_136(CU633865|pid:none) Podospora anserina genomic DNA c... 146 3e-33
X94547_1(X94547|pid:none) S.cerevisiae 12.8 kb DNA from left arm... 142 3e-32
(P53953) RecName: Full=SED5-binding protein 2; AltName: Full=SEC... 142 3e-32
CR382131_577(CR382131|pid:none) Yarrowia lipolytica strain CLIB1... 137 1e-30
(Q875V7) RecName: Full=Protein transport protein SEC24-2; &AY14... 137 1e-30
(Q9USS7) RecName: Full=Uncharacterized protein C4.03c; &AL12186... 136 3e-30
FN357487_14(FN357487|pid:none) Schistosoma mansoni genome sequen... 136 3e-30
(Q876F4) RecName: Full=Protein transport protein SEC24-1; &AY14... 134 1e-29
FN357311_35(FN357311|pid:none) Schistosoma mansoni genome sequen... 127 2e-27
DQ683204_1(DQ683204|pid:none) Pichia pastoris Lst1p, genomic DNA. 116 2e-24
FN392322_509(FN392322|pid:none) Pichia pastoris GS115 chromosome... 116 2e-24
CR382137_883(CR382137|pid:none) Debaryomyces hansenii strain CBS... 114 2e-23
CR382126_947(CR382126|pid:none) Kluyveromyces lactis strain NRRL... 107 2e-21
(P38810) RecName: Full=SED5-binding protein 3; AltName: Full=SEC... 107 2e-21
AC159411_38(AC159411|pid:none) Trypanosoma brucei chromosome 3 c... 106 3e-21
AL590442_121(AL590442|pid:none) chromosome II of strain GB-M1 of... 96 3e-18
CT005264_137(CT005264|pid:none) Leishmania major strain Friedlin... 94 2e-17
AP008217_910(AP008217|pid:none) Oryza sativa (japonica cultivar-... 81 2e-13
AB261032_1(AB261032|pid:none) Entamoeba histolytica gene for EhS... 80 2e-13
AK125962_1(AK125962|pid:none) Homo sapiens cDNA FLJ43974 fis, cl... 76 4e-12
BC049257_1(BC049257|pid:none) Mus musculus Sec24 related gene fa... 76 4e-12
AK303085_1(AK303085|pid:none) Homo sapiens cDNA FLJ60379 complet... 73 4e-11
AK316451_1(AK316451|pid:none) Homo sapiens cDNA, FLJ79350 comple... 71 2e-10
BC117906_1(BC117906|pid:none) Mus musculus Sec24 related gene fa... 67 3e-09
BC135087_1(BC135087|pid:none) Danio rerio wu:fd10d12, mRNA (cDNA... 66 4e-09
AM910985_29(AM910985|pid:none) Plasmodium knowlesi strain H chro... 64 2e-08
AP004399_10(AP004399|pid:none) Oryza sativa Japonica Group genom... 64 3e-08
CP001575_560(CP001575|pid:none) Micromonas sp. RCC299 chromosome... 63 3e-08
AL034557_50(AL034557|pid:none) Plasmodium falciparum MAL4P1. 62 7e-08
AL844503_49(AL844503|pid:none) Plasmodium falciparum 3D7 chromos... 62 7e-08
DQ683201_1(DQ683201|pid:none) Pichia pastoris Sec23 gene, genomi... 60 4e-07
(A3GFA2) RecName: Full=Protein transport protein SEC23; 60 4e-07
AP008207_1159(AP008207|pid:none) Oryza sativa (japonica cultivar... 59 5e-07
AC153129_2(AC153129|pid:none) Medicago truncatula clone mth2-103... 59 5e-07
AP002953_16(AP002953|pid:none) Oryza sativa Japonica Group genom... 59 5e-07
D89149_1(D89149|pid:none) Schizosaccharomyces pombe mRNA, partia... 57 3e-06
(Q5A455) RecName: Full=Protein transport protein SEC23; 55 7e-06
CU928176_37(CU928176|pid:none) Zygosaccharomyces rouxii strain C... 55 9e-06
(Q6FSI6) RecName: Full=Protein transport protein SEC23-2; &CR38... 55 9e-06
CR382133_213(CR382133|pid:none) Debaryomyces hansenii strain CBS... 55 9e-06
(Q1DY01) RecName: Full=Protein transport protein SEC23; 54 2e-05
AM920428_320(AM920428|pid:none) Penicillium chrysogenum Wisconsi... 54 2e-05
AJ276482_1(AJ276482|pid:none) Drosophila melanogaster putative s... 52 1e-04
(A4R1J7) RecName: Full=Protein transport protein SEC23; 52 1e-04
AY810439_1(AY810439|pid:none) Schistosoma japonicum SJCHGC06000 ... 52 1e-04
BT001619_1(BT001619|pid:none) Drosophila melanogaster RE35250 fu... 51 1e-04
(Q2URM9) RecName: Full=Protein transport protein sec23; &AP0071... 51 1e-04
CP000588_324(CP000588|pid:none) Ostreococcus lucimarinus CCE9901... 51 1e-04
(Q5BGR9) RecName: Full=Protein transport protein sec23; 51 2e-04
A71403(A71403) probable transport protein - Arabidopsis thaliana... 50 3e-04
AY074391_1(AY074391|pid:none) Arabidopsis thaliana putative tran... 50 3e-04
AJ542488_1(AJ542488|pid:none) Plasmodium falciparum 3D7 cDNA for... 50 3e-04
AB023036_15(AB023036|pid:none) Arabidopsis thaliana genomic DNA,... 50 4e-04
AM461123_2(AM461123|pid:none) Vitis vinifera contig VV78X094631.... 49 5e-04
AF488675_1(AF488675|pid:none) Plasmodium falciparum putative Sec... 49 6e-04
CU928165_25(CU928165|pid:none) Kluyveromyces thermotolerans stra... 49 8e-04
FN357914_17(FN357914|pid:none) Schistosoma mansoni genome sequen... 49 8e-04
AF467555_1(AF467555|pid:none) Rana ridibunda protein transport p... 49 8e-04
AM473059_1(AM473059|pid:none) Vitis vinifera contig VV78X268249.... 48 0.001
AL590450_79(AL590450|pid:none) chromosome XI of strain GB-M1 of ... 48 0.001
(Q5R9P3) RecName: Full=Protein transport protein Sec23A; AltName... 48 0.001
(A5DA00) RecName: Full=Protein transport protein SEC23; 48 0.001
AC147484_12(AC147484|pid:none) Medicago truncatula clone mth2-52... 47 0.002
CP000589_249(CP000589|pid:none) Ostreococcus lucimarinus CCE9901... 47 0.002
(Q5ZK03) RecName: Full=Protein transport protein Sec23A; AltName... 47 0.002
(Q2HB00) RecName: Full=Protein transport protein SEC23; 47 0.002
(O74873) RecName: Full=Protein transport protein sec23-1; &AL03... 47 0.002
CR860755_1(CR860755|pid:none) Pongo abelii mRNA; cDNA DKFZp459O1... 47 0.002
AM910987_85(AM910987|pid:none) Plasmodium knowlesi strain H chro... 47 0.002
BX511148_4(BX511148|pid:none) Zebrafish DNA sequence from clone ... 47 0.002
FM992690_200(FM992690|pid:none) Candida dubliniensis CD36 chromo... 47 0.003
(Q15436) RecName: Full=Protein transport protein Sec23A; AltName... 47 0.003
AK312259_1(AK312259|pid:none) Homo sapiens cDNA, FLJ92554, Homo ... 47 0.003
BC036649_1(BC036649|pid:none) Homo sapiens Sec23 homolog A (S. c... 47 0.003
(A2VDL8) RecName: Full=Protein transport protein Sec23A; AltName... 46 0.004
AK028152_1(AK028152|pid:none) Mus musculus adult male tongue cDN... 46 0.004
(Q6FSK3) RecName: Full=Protein transport protein SEC23-1; &CR38... 46 0.004
AP006852_154(AP006852|pid:none) Candida albicans genomic DNA, ch... 46 0.005
AK298598_1(AK298598|pid:none) Homo sapiens cDNA FLJ60783 complet... 45 0.007
X97065_1(X97065|pid:none) H.sapiens mRNA for Sec23B isoform, 245... 45 0.007
(Q15437) RecName: Full=Protein transport protein Sec23B; AltName... 45 0.007
AL121893_9(AL121893|pid:none) Human DNA sequence from clone RP11... 45 0.007
AY391408_1(AY391408|pid:none) Danio rerio Sec23-like protein B m... 45 0.007
(Q5R5G2) RecName: Full=Protein transport protein Sec23B; AltName... 45 0.007
BC097063_1(BC097063|pid:none) Danio rerio Sec23 homolog A (S. ce... 45 0.009
FM992694_150(FM992694|pid:none) Candida dubliniensis CD36 chromo... 45 0.009
CR940347_813(CR940347|pid:none) Theileria annulata strain Ankara... 45 0.012
BC075240_1(BC075240|pid:none) Xenopus laevis MGC84454 protein, m... 45 0.012
CR855194_5(CR855194|pid:none) Oryza sativa genomic DNA, chromoso... 45 0.012
AL662945_4(AL662945|pid:none) Oryza sativa genomic DNA, chromoso... 45 0.012
(Q5KAM7) RecName: Full=Protein transport protein SEC23; &AE0173... 44 0.016
(Q0CUU1) RecName: Full=Protein transport protein sec23; 44 0.016
AC133931_3(AC133931|pid:none) Oryza sativa (japonica cultivar-gr... 44 0.021
AK000709_1(AK000709|pid:none) Homo sapiens cDNA FLJ20702 fis, cl... 44 0.021
FN357311_36(FN357311|pid:none) Schistosoma mansoni genome sequen... 43 0.046
AK146083_1(AK146083|pid:none) Mus musculus 11 days pregnant adul... 42 0.078
AC006232_14(AC006232|pid:none) Arabidopsis thaliana chromosome 2... 42 0.078
BC005464_1(BC005464|pid:none) Mus musculus SEC23B (S. cerevisiae... 42 0.078
AK155168_1(AK155168|pid:none) Mus musculus NOD-derived CD11c +ve... 42 0.078
(Q0US25) RecName: Full=Protein transport protein SEC23; 42 0.078
(Q4PE39) RecName: Full=Protein transport protein SEC23; 41 0.13
AL132858_10(AL132858|pid:none) Caenorhabditis elegans YAC Y113G7... 40 0.23
BT069063_1(BT069063|pid:none) Zea mays full-length cDNA clone ZM... 40 0.39
CR954217_239(CR954217|pid:none) Ostreococcus tauri strain OTTH05... 39 0.86
DQ302100_9(DQ302100|pid:none) Vanhornia eucnemidarum mitochondri... 38 1.1
BT063957_1(BT063957|pid:none) Zea mays full-length cDNA clone ZM... 38 1.1
DQ683202_1(DQ683202|pid:none) Pichia pastoris SHL23, genomic DNA... 38 1.1
BT060462_1(BT060462|pid:none) Zea mays full-length cDNA clone ZM... 38 1.1
BT030477_1(BT030477|pid:none) Bos taurus Sec23 homolog B (S. cer... 38 1.5
AL808119_9(AL808119|pid:none) Mouse DNA sequence from clone RP23... 38 1.5
AX886081_1(AX886081|pid:none) Sequence 1944 from Patent EP1033401. 38 1.5
AP007281_1336(AP007281|pid:none) Lactobacillus reuteri JCM 1112 ... 37 2.5
AK090341_1(AK090341|pid:none) Mus musculus adult male accessory ... 37 2.5
AF404306_31(AF404306|pid:none) Rhizophydium sp. 136 mitochondrio... 37 3.3
AM461123_3(AM461123|pid:none) Vitis vinifera contig VV78X094631.... 36 4.3
CP000874_2237(CP000874|pid:none) Rhizobium sp. NGR234 plasmid pN... 36 5.6
AE017198_23(AE017198|pid:none) Lactobacillus johnsonii NCC 533, ... 36 5.6
EU180507_1(EU180507|pid:none) Paraleucophenga tanydactylia strai... 36 5.6
CP000937_633(CP000937|pid:none) Francisella philomiragia subsp. ... 35 7.3
>(Q54U61) RecName: Full=Protein transport protein SEC24;
Length = 1013
Score = 592 bits (1525), Expect = e-167
Identities = 287/297 (96%), Positives = 289/297 (97%)
Frame = +2
Query: 329 AAVEQPVPTLENLCPKPFMRLSMNAIPNHPSILNKVHIPLGLNIHPLAHDPQGPVPVVYS 508
AAVEQPVPTLENLCPKPFMRLSMNAIPNHPSILNKVHIPLGLNIHPLAHDPQGPVPVVYS
Sbjct: 270 AAVEQPVPTLENLCPKPFMRLSMNAIPNHPSILNKVHIPLGLNIHPLAHDPQGPVPVVYS 329
Query: 509 SIIRCRRCRTYINPFVTWLNGGGRWRCNMCENINDTPQDYFSPIDFTTGKRSDILNRPEL 688
SIIRCRRCRTYINPFVTWLNGGGRWRCNMCENINDTPQDYFSPIDFTTGKRSDILNRPEL
Sbjct: 330 SIIRCRRCRTYINPFVTWLNGGGRWRCNMCENINDTPQDYFSPIDFTTGKRSDILNRPEL 389
Query: 689 QKGCVEFLASSDYLVRPPQPPTYFFIVDVCYESIVSGMLNTAINAIKTTLGDLIEKSNGR 868
QKGCVEFLASSDYLVRPPQPPTYFFIVDVCYESIVSGMLNTAINAIKTTLGDLIEKSNGR
Sbjct: 390 QKGCVEFLASSDYLVRPPQPPTYFFIVDVCYESIVSGMLNTAINAIKTTLGDLIEKSNGR 449
Query: 869 ARFGIMTFDDSLHFYNLKSNPSNRPQMFVVTDMDQVYVPPFEDFLVNLKDGLEVVENTLN 1048
ARFGIMTFDDSLHFYNLKSNPSNRPQMFVVTDMDQVYVPPFEDFLVNLKDGLEVVENTLN
Sbjct: 450 ARFGIMTFDDSLHFYNLKSNPSNRPQMFVVTDMDQVYVPPFEDFLVNLKDGLEVVENTLN 509
Query: 1049 IIQSMPRTQQKVESCLGSALKAAFSICERVGGKLIVLQSYIPRGPXXXXNYCYQKPL 1219
IIQSMPRTQQKVESCLGSALKAAFSICERVGGKLIVLQSYIPRGP + +PL
Sbjct: 510 IIQSMPRTQQKVESCLGSALKAAFSICERVGGKLIVLQSYIPRGPLGKLSIRDYQPL 566
Score = 360 bits (924), Expect = 1e-97
Identities = 180/193 (93%), Positives = 180/193 (93%)
Frame = +1
Query: 1234 YVVSMVKSIIFSSRTTHPDLRAFHMQRMKTLDLNSCLNFFYPYFYSLLAXXXXXXXXXXX 1413
YVVSMVKSIIFSSRTTHPDLRAFHMQRMKTLDLNSCLNFFYPYFYSLLA
Sbjct: 821 YVVSMVKSIIFSSRTTHPDLRAFHMQRMKTLDLNSCLNFFYPYFYSLLAPPNYQPPTTPN 880
Query: 1414 XXFVPHSFKLSSDELQRNGLFAIVNGYTLYLFIGEQLPQPVFTDIFGVPDVSQLDINTFQ 1593
FVPHSFKLSSDELQRNGLFAIVNGYTLYLFIGEQLPQPVFTDIFGVPDVSQLDINTFQ
Sbjct: 881 TPFVPHSFKLSSDELQRNGLFAIVNGYTLYLFIGEQLPQPVFTDIFGVPDVSQLDINTFQ 940
Query: 1594 DLPILDNDHSRYARKVIELVRNSYPEYLKMFVVKSTDRQRRPEFQSLLIEDRTPEGCSYY 1773
DLPILDNDHSRYARKVIELVRNSYPEYLKMFVVKSTDRQRRPEFQSLLIEDRTPEGCSYY
Sbjct: 941 DLPILDNDHSRYARKVIELVRNSYPEYLKMFVVKSTDRQRRPEFQSLLIEDRTPEGCSYY 1000
Query: 1774 EFIIQLQSRITQN 1812
EFIIQLQSRITQN
Sbjct: 1001 EFIIQLQSRITQN 1013
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 2,551,251,911
Number of extensions: 51206420
Number of successful extensions: 127122
Number of sequences better than 10.0: 184
Number of HSP's gapped: 126654
Number of HSP's successfully gapped: 261
Length of query: 629
Length of database: 1,051,180,864
Length adjustment: 135
Effective length of query: 494
Effective length of database: 614,245,399
Effective search space: 303437227106
Effective search space used: 303437227106
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
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