Dictyostelium discoideum cDNA Contig-U12158-1

Assembled

Chromosomal Location of Contig-U12158-1

Sequence Contig-U12158-1

ACAACAACAA ACGCAACAAC CACAAACATG GAATACATCA CCACCACAAA
CTCAACAACA ACCAATTCAA ACATTTACAC CTCATATATC ACCACCACAA
ACCCAACAAC AACAACCACA ACAAACAACA CCATTCCAAC CAATGCAACC
AACTCAACCA TCATATAGTC AACCACAACA AACACAACCA TTACCATTAC
CACCAATGCA ACCATCATAT AATCAACAAC CATATACTCA ACAACCATAT
ACTCAACAAC CATATACTCA ACAACCAGGA CAACAATCGC AATATCAACA
ACCACAACAA CAAACCCCAC AACAACAAGC TGCAGTGGAA CAACCAGTAC
CAACTTTAGA AAATCTTTGT CCTAAACCAT TCATGAGATT ATCAATGAAT
GCAATTCCAA ATCATCCTTC AATTTTAAAT AAAGTTCATA TACCATTAGG
TTTAAATATT CATCCATTGG CACATGATCC ACAAGGACCA GTACCAGTTG
TTTATTCATC AATAATTAGA TGTAGAAGAT GTAGAACATA TATAAATCCA
TTTGTTACTT GGTTAAATGG AGGTGGTAGA TGGAGATGTA ATATGTGTGA
AAATATTAAC GATACACCCC AAGATTATTT TTCACCAATT GATTTTACAA
CAGGCAAAAG ATCAGATATT TTAAACAGAC CAGAATTACA AAAAGGTTGT
GTAGAATTTT TAGCATCAAG TGATTATTTA GTTAGACCAC CACAACCACC
AACCTATTTC TTTATAGTTG ATGTTTGTTA TGAATCTATA GTATCAGGAA
TGTTGAATAC AGCGATCAAT GCAATCAAGA CCACATTGGG AGATTTAATT
GAAAAGAGTA ATGGTAGAGC AAGATTTGGT ATAATGACAT TTGATGATTC
ATTACATTTT TACAACTTGA AATCAAATCC ATCCAATAGA CCACAAATGT
TTGTTGTTAC CGATATGGAT CAAGTGTATG TACCACCATT TGAAGACTTT
TTAGTGAATC TAAAGGATGG TTTAGAGGTT GTAGAGAATA CATTGAATAT
CATTCAAAGT ATGCCACGTA CTCAACAAAA GGTTGAGAGT TGTTTAGGTA
GTGCATTGAA GGCAGCATTC AGCATTTGTG AGCGTGTTGG CGGTAAATTG
ATTGTCTTAC AATCTTATAT TCCACGTGGT CCAT------ ----AAACTA
TTGTTACCAG AAACCCTTAA ACATCTTCCA CTCTATGTCG TCTCAATGGT
AAAGAGTATC ATATTCTCAA GTCGTACCAC TCATCCTGAT TTACGTGCTT
TCCATATGCA ACGTATGAAA ACTTTAGATT TGAATTCTTG TCTAAACTTT
TTCTATCCTT ATTTCTATTC TCTCTTGGCC CCTCCAAATT ATCAACCACC
AACAACTCCA AACACTCCAT TCGTACCTCA CTCATTTAAG CTATCCTCTG
ATGAACTCCA ACGTAATGGT TTATTCGCTA TTGTCAATGG TTATACTCTA
TATCTTTTCA TTGGTGAACA ATTACCTCAA CCAGTTTTCA CAGATATTTT
CGGTGTCCCA GACGTTTCTC AACTTGATAT CAACACCTTC CAAGATCTTC
CAATCTTGGA TAATGATCAT AGTAGATACG CTCGTAAAGT AATTGAACTC
GTTAGAAATA GTTATCCAGA ATACTTGAAA ATGTTTGTTG TTAAATCAAC
TGATAGACAA AGAAGACCTG AATTCCAATC ACTTTTAATT GAAGATAGAA
CTCCAGAGGG TTGCTCTTAT TATGAATTTA TTATTCAACT TCAATCAAGA
ATTACTCAAA ATTAATATTA ATTTAAAAAA ATAAAAATAA AAAAAATAAA
AAAATAAAAT AAATAAATAA AAAAAAAATA AAAAAAT

Translated Amino Acid Sequence Contig-U12158-1

QQQTQQPQTWNTSPPQTQQQPIQTFTPHISPPQTQQQQPQQTTPFQPMQPTQPSYSQPQQ
TQPLPLPPMQPSYNQQPYTQQPYTQQPYTQQPGQQSQYQQPQQQTPQQQAAVEQPVPTLE
NLCPKPFMRLSMNAIPNHPSILNKVHIPLGLNIHPLAHDPQGPVPVVYSSIIRCRRCRTY
INPFVTWLNGGGRWRCNMCENINDTPQDYFSPIDFTTGKRSDILNRPELQKGCVEFLASS
DYLVRPPQPPTYFFIVDVCYESIVSGMLNTAINAIKTTLGDLIEKSNGRARFGIMTFDDS
LHFYNLKSNPSNRPQMFVVTDMDQVYVPPFEDFLVNLKDGLEVVENTLNIIQSMPRTQQK
VESCLGSALKAAFSICERVGGKLIVLQSYIPRGP---

---KLLLPETLKHLPLYVVSMVKSIIFSSRTTHPDLRAFHMQRMKTLDLNSCLNFFYPYF
YSLLAPPNYQPPTTPNTPFVPHSFKLSSDELQRNGLFAIVNGYTLYLFIGEQLPQPVFTD
IFGVPDVSQLDINTFQDLPILDNDHSRYARKVIELVRNSYPEYLKMFVVKSTDRQRRPEF
QSLLIEDRTPEGCSYYEFIIQLQSRITQN*y*fkkikikkikk*nk*ikkk*kn

Homology Contig-U12158-1 vs CSM-Contig

Sequences producing significant alignments:                        (bits)  Value


Contig-U12158-1 (Contig-U12158-1Q) /CSM_Contig/Conti...  2906  0.0
Contig-U09396-1 (Contig-U09396-1Q) /CSM_Contig/Conti...    40  0.009
Contig-U08866-1 (Contig-U08866-1Q) /CSM_Contig/Conti...    40  0.009
Contig-U14073-1 (Contig-U14073-1Q) /CSM_Contig/Conti...    38  0.034
Contig-U11778-1 (Contig-U11778-1Q) /CSM_Contig/Conti...    38  0.034
Contig-U11175-1 (Contig-U11175-1Q) /CSM_Contig/Conti...    38  0.034
Contig-U11650-1 (Contig-U11650-1Q) /CSM_Contig/Conti...    36  0.13
Contig-U11246-1 (Contig-U11246-1Q) /CSM_Contig/Conti...    36  0.13
Contig-U09347-1 (Contig-U09347-1Q) /CSM_Contig/Conti...    36  0.13
Contig-U07707-1 (Contig-U07707-1Q) /CSM_Contig/Conti...    36  0.13

Homology Contig-U12158-1 vs DNA

Sequences producing significant alignments:                  (bits) Value  N


(BJ427348) Dictyostelium discoideum cDNA clone:ddv62j05, 5' ...  1324   0.0    1
(AU039508) Dictyostelium discoideum slug cDNA, clone SLA762.     1249   0.0    1
(AU034983) Dictyostelium discoideum slug cDNA, clone SLE445.     1154   0.0    1
(AU061495) Dictyostelium discoideum slug cDNA, clone SLE445.     1041   0.0    2
(BJ446249) Dictyostelium discoideum cDNA clone:ddv62j05, 3' ...   977   0.0    1
(GR575284) CBXU812.b1 CBXU Dictyostelium purpureum 6 hr vege...   141   e-111  7
(BJ423992) Dictyostelium discoideum cDNA clone:ddv51f02, 5' ...   343   2e-91  2
(GR575285) CBXU812.g1 CBXU Dictyostelium purpureum 6 hr vege...    76   6e-09  1
(AL844509) Plasmodium falciparum 3D7 chromosome 13.                46   7e-05  2
(AL049185) Plasmodium falciparum DNA *** SEQUENCING IN PROGR...    46   7e-05  2

Homology Contig-U12158-1 vs Protein

Sequences producing significant alignments:                      (bits) Value


(Q54U61) RecName: Full=Protein transport protein SEC24;               592   e-167
BT070805_1(BT070805|pid:none) Picea sitchensis clone WS02750_N05...   264   1e-68
CR855030_5(CR855030|pid:none) Oryza sativa genomic DNA, chromoso...   260   1e-67
AL662964_17(AL662964|pid:none) Oryza sativa genomic DNA, chromos...   260   1e-67
AC012395_23(AC012395|pid:none) Arabidopsis thaliana chromosome I...   249   2e-64
CP001574_315(CP001574|pid:none) Micromonas sp. RCC299 chromosome...   233   2e-59
AM910993_97(AM910993|pid:none) Plasmodium knowlesi strain H chro...   231   9e-59
CP001141_71(CP001141|pid:none) Phaeodactylum tricornutum CCAP 10...   227   1e-57
(Q1E6U9) RecName: Full=Protein transport protein SEC24;               218   8e-55
(A2QSG6) RecName: Full=Protein transport protein sec24;  &AM2701...   216   3e-54