Homology Contig-U12158-1 vs DNA
Query= Contig-U12158-1 (Contig-U12158-1Q) /CSM_Contig/Contig-U12158-1Q.Seq.d
(1887 letters)
Database: ddbj_A
108,600,042 sequences; 106,710,029,556 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value N
(BJ427348) Dictyostelium discoideum cDNA clone:ddv62j05, 5' ... 1324 0.0 1
(AU039508) Dictyostelium discoideum slug cDNA, clone SLA762. 1249 0.0 1
(AU034983) Dictyostelium discoideum slug cDNA, clone SLE445. 1154 0.0 1
(AU061495) Dictyostelium discoideum slug cDNA, clone SLE445. 1041 0.0 2
(BJ446249) Dictyostelium discoideum cDNA clone:ddv62j05, 3' ... 977 0.0 1
(GR575284) CBXU812.b1 CBXU Dictyostelium purpureum 6 hr vege... 141 e-111 7
(BJ423992) Dictyostelium discoideum cDNA clone:ddv51f02, 5' ... 343 2e-91 2
(GR575285) CBXU812.g1 CBXU Dictyostelium purpureum 6 hr vege... 76 6e-09 1
(AL844509) Plasmodium falciparum 3D7 chromosome 13. 46 7e-05 2
(AL049185) Plasmodium falciparum DNA *** SEQUENCING IN PROGR... 46 7e-05 2
(BF297729) 055PbD10 Pb cDNA #17, Tommaso Pace, Marta Ponzi, ... 44 0.024 3
(AZ930141) 474.dhz50c03.s1 Saccharomyces unisporus NRRL Y-15... 40 0.25 2
(GP148532) Sequence 17995 from patent US 7482117. 50 0.28 8
(GP148213) Sequence 17676 from patent US 7482117. 50 0.33 1
(AC026356) Homo sapiens 12 BAC RP11-817I4 (Roswell Park Canc... 50 0.33 1
(AC136828) Rattus norvegicus clone CH230-171P21, *** SEQUENC... 50 0.33 1
(AC023973) Homo sapiens chromosome 12 clone RP11-793A9 map 1... 50 0.33 1
(GS200608) DH031O13.F Brachypodium distachyon Bd21 HindIII B... 50 0.33 1
(GS199869) DH004G06.F Brachypodium distachyon Bd21 HindIII B... 50 0.33 1
(GS183272) DH179B21.F Brachypodium distachyon Bd21 HindIII B... 50 0.33 1
(EI117489) DB031O13_F1.ab1 Brachypodium distachyon Bd21 BamH... 50 0.33 1
(CR736427) RZPD Homo sapiens cDNA clone IMAGp998A0394 = IMAG... 50 0.33 1
(BX096987) RZPD Homo sapiens cDNA clone IMAGp998B02110 = IMA... 50 0.33 1
(AW023999) df64a02.y1 Morton Fetal Cochlea Homo sapiens cDNA... 50 0.33 1
(AC184616) Strongylocentrotus purpuratus clone R3-3093F10, W... 48 1.3 1
(CL106126) ISB1-46E10_Sp6.1 ISB1 Xenopus (Silurana) tropical... 48 1.3 1
(EX849084) CBNC7731.fwd CBNC Phycomyces blakesleeanus NRRL15... 44 2.0 2
(AZ693360) ENTJU19TF Entamoeba histolytica Sheared DNA Entam... 34 2.1 3
(AP010297) Lotus japonicus genomic DNA, chromosome 6, clone:... 34 2.6 2
(AP008105) Lotus japonicus genomic DNA, chromosome 2, clone:... 34 2.7 2
(AP010241) Lotus japonicus genomic DNA, clone: LjT03D14, TM1... 34 2.7 2
(CB367106) O2207 ookinete library Plasmodium berghei cDNA cl... 44 4.1 2
(CU024867) Pan troglodytes chromosome X clone CH251-141I15 m... 44 4.8 3
(AC011271) Homo sapiens clone RP11-6E10, WORKING DRAFT SEQUE... 40 5.0 5
(AC116788) Mus musculus chromosome 8, clone RP24-296N13, com... 46 5.2 1
(AC099591) Mus musculus chromosome 19, clone RP23-401D18, co... 46 5.2 1
(AC149922) Strongylocentrotus purpuratus clone R3-13I1, WORK... 46 5.2 1
(CU633393) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 46 5.2 1
(AC181877) Strongylocentrotus purpuratus clone R3-1019A9, WO... 46 5.2 1
(AC181103) Strongylocentrotus purpuratus clone R3-3029I09, W... 46 5.2 1
(AC180379) Strongylocentrotus purpuratus clone R3-3113D23, W... 46 5.2 1
(AC180361) Strongylocentrotus purpuratus clone R3-3115B12, W... 46 5.2 1
(AC179559) Strongylocentrotus purpuratus clone R3-1032D15, W... 46 5.2 1
(DT131590) JGI_ANNO13562.rev ANNO Pimephales promelas Whole ... 46 5.2 1
(AM464800) Vitis vinifera contig VV78X220659.11, whole genom... 40 6.0 2
(AM440394) Vitis vinifera contig VV78X179801.7, whole genome... 40 7.5 2
(AM470502) Vitis vinifera contig VV79X000964.2, whole genome... 40 8.9 2
>(BJ427348) Dictyostelium discoideum cDNA clone:ddv62j05, 5' end,
single read.
Length = 672
Score = 1324 bits (668), Expect = 0.0
Identities = 671/672 (99%)
Strand = Plus / Plus
Query: 513 taattagatgtagaagatgtagaacatatataaatccatttgttacttggttaaatggag 572
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 taattagatgtagaagatgtagaacatatataaatccatttgttacttggttaaatggag 60
Query: 573 gtggtagatggagatgtaatatgtgtgaaaatattaacgatacaccccaagattattttt 632
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gtggtagatggagatgtaatatgtgtgaaaatattaacgatacaccccaagattattttt 120
Query: 633 caccaattgattttacaacaggcaaaagatcagatattttaaacagaccagaattacaaa 692
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 caccaattgattttacaacaggcaaaagatcagatattttaaacagaccagaattacaaa 180
Query: 693 aaggttgtgtagaatttttagcatcaagtgattatttagttagaccaccacaaccaccaa 752
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 aaggttgtgtagaatttttagcatcaagtgattatttagttagaccaccacaaccaccaa 240
Query: 753 cctatttctttatagttgatgtttgttatgaatctatagtatcaggaatgttgaatacag 812
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 241 cctatttctttatagttgatgtttgttatgaatctatagtatcagggatgttgaatacag 300
Query: 813 cgatcaatgcaatcaagaccacattgggagatttaattgaaaagagtaatggtagagcaa 872
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 cgatcaatgcaatcaagaccacattgggagatttaattgaaaagagtaatggtagagcaa 360
Query: 873 gatttggtataatgacatttgatgattcattacatttttacaacttgaaatcaaatccat 932
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 gatttggtataatgacatttgatgattcattacatttttacaacttgaaatcaaatccat 420
Query: 933 ccaatagaccacaaatgtttgttgttaccgatatggatcaagtgtatgtaccaccatttg 992
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 ccaatagaccacaaatgtttgttgttaccgatatggatcaagtgtatgtaccaccatttg 480
Query: 993 aagactttttagtgaatctaaaggatggtttagaggttgtagagaatacattgaatatca 1052
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 aagactttttagtgaatctaaaggatggtttagaggttgtagagaatacattgaatatca 540
Query: 1053 ttcaaagtatgccacgtactcaacaaaaggttgagagttgtttaggtagtgcattgaagg 1112
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 ttcaaagtatgccacgtactcaacaaaaggttgagagttgtttaggtagtgcattgaagg 600
Query: 1113 cagcattcagcatttgtgagcgtgttggcggtaaattgattgtcttacaatcttatattc 1172
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 cagcattcagcatttgtgagcgtgttggcggtaaattgattgtcttacaatcttatattc 660
Query: 1173 cacgtggtccat 1184
||||||||||||
Sbjct: 661 cacgtggtccat 672
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Number of Sequences: 108600042
Number of Hits to DB: 1,854,604,686
Number of extensions: 104405890
Number of successful extensions: 8066223
Number of sequences better than 10.0: 47
Length of query: 1887
Length of database: 106,710,029,556
Length adjustment: 24
Effective length of query: 1863
Effective length of database: 104,103,628,548
Effective search space: 193945059984924
Effective search space used: 193945059984924
X1: 11 (21.8 bits)
S2: 23 (46.1 bits)
Dictyostelium discoideum cDNA Project Home