Dictyostelium discoideum cDNA Contig-U12151-1

Assembled

Chromosomal Location of Contig-U12151-1

Sequence Contig-U12151-1

AAAATAAAAC AAATAATAAA CAAAGAAAAA AAAAAAAAAA AAACTAAAAA
AAAAAAAAAA ACCAATCAAA TATTTATTTA TTAAAATTGC AATTATGAAT
AAAATATATT TAATATTAAT TTTATTCACT TTTGTTGGTA TAATTTTAGC
CAACGTTGAA AAAGCTGAAG TATCATGTAC ATGTGATGAA AATTGTAATG
ATGGTAATAA ATGCACTTTG GATAAATGTA ATAACGGTTG TTGCTCAAAT
ACACCAATTA ATA------- ---TAAATGT ACCCAATCAG GTGGTGTAAC
TCATACTCCA ATTGCTTGTG ATGATAAAAA TGCTTGTACC GCAGATTCTT
GTTCAAATTC AACCGGTTGT TGCCACACCC CAATTACATG TGATGATAAT
AATGCATGTA CCGTAGATTC CTGTTCAAAT TCAACTGGCT GTTGCCATAC
TCCAATCAAT GTCGATGATA ACAACGCATG TACTGAAGAT AAATGTACTC
AATCAGGTGG TGTAACTCAT ACTCCAATTG CTTGTGATGA TAAAAATGCC
TGTACCGTAG ACTCATGTTC AAATTCAACT GGTTGTGTCC ACACCCCACT
TGCCTGTGAT GATAATAATC CATGCACAGT AGACTCATGT TCAAACTCAA
CTGGCTGTTG CCATACTCCA ATCAATGTCG ATGATAACAA TGCATGTACT
GAAGATAAAT GTACTCAATC AGGTGGCGTA ACCCATACTC CAATTAATTG
CGATGATAAC AATAAATGTA CCGTAGATTC ATGTTCAAAC TCAACCGGCT
GTTGCCATAC CCCAATGTCT TGTGACGATA ATAACCCATG TACTGTTGAC
TCATGTTCAA ATTCAACCGG CTGTGTCCAT ACCCCAATCA ATGTCGATGA
TAATAACGCA TGTACTGAAG ATAAATGTAC TCAAAATGGT GGTGTAACTC
ATACTCCAAT TGCTTGTGAC GATAAAAATG CTTGTACCGN AGACTCATGT
TCAAATTCAA CTGGTTGTTG TCACACCCCA TTGAAATGTG ATGATAATAA
TGCATGTACA GTAGATTCTT GTTCAAACTC AACTGGGTGT GTCCATACTC
CAATCAATGT CGATGATAAT AACGCTTGTA CTGAAGATAA ATGTACCCAA
TCAGGTGGTG TAACTCATAC TCCAATTTCA TGTGATGATA AAAATCCATG
TACCATTGAT TCATGTTCAA ATTCAACCGG TTGTGTCCAT ACCCCAATGT
CTTGTGATGA TAGAAACCCA TGTACTTCAG ATTTTTGCTC ATGGGAAAAA
GGATGTCAAC ATGTTGCACT CTCATGTAAT GATTTCAACG CATGTACAAT
GGATTCATGT TCCAATTCAA CTGGTTGCAC TCATACCCCA ATTGCCTGTG
ATGATAAAAA TGCATGTACC GTAGACTCAT GTTCAAACTC AACTGGTTGT
GTCCATACCC CACTTACATG TGATGATAAT AACCCATGTA CTGTTGACTC
ATGTTCAAAC TCAACCGGAT GTTGCCATAC CCCAATCAAT GTTGATGATC
ATAATGCTTG CACTGAAGAT AAATGTACTC AATCAGGTGG TGTAACTCAT
ACTCCAATTG CTTGTGACGA TAAAAATGCT TGTACCGTAG ACTCATGTTC
AAATTCAACT GGTTGTTGTC ACACCCCACT TTCATGTGAT GATAATAATG
CATGTACCGT AGATTCCTGT TCAAACTCAA CTGGCTGTGT CCATACCCCA
ATCAATGTCG ATGATAATAA TGCATGTACT GAAGATAAAT GTACCCAATC
AGGTGGTGTA ACTCATACTC CAATTGCTTG TGATGATAAA AATGCTTGTA
CTGTAGATTC ATGCTCAAAT TCAACTGGNT GTTGNCATAC CCCATTGAAT
GTGATGATAA TAATGCATGT ACCGTAGATT CTGTTCAAAC TCAACTGGCT
GTGGCCATAC TCCAATCAAT GNCGATGATA ACAACGCATG TACTGAAGAT
AAATGTACTC AANCAGGTGG TGTAACTCAT ACTCCAATTG NTTGTGANGA
TAATAACCCA TGTCCCGTAG ATTCATGTTC AAATTCAACT GGTTGTGTCC
ATACCCCCAA TGAATGTTGA TGATAATAAT GCCTGTACTG AAGATAAATG
TACTCAAAAT GGTGGTGTTA CTCATACTCC CAATTAGTTG TGATGATTTA
AAATTCATGT ACTGATGATT CATGTTCAAA TTCAGCCGGG TTGTGTCCAC
ACTCCAATTA ATTGCGATGA TAATAATGAA TGTACTGCTG ACTCATGTTC
AAACTCAACT GGCTGTTGTC ACACCCCAAT TTCATGTGAT GATAATAATC
CATGTACCGT AGATTCCTGT TCAAATTCAA TCTGGTTGTT GTCACACTCC
AATCAATGTT GATGATAATA ATCCATGTAC CGAAGATAAA TGTACTCAAT
CAGGTGGTGT AACTCATACT CCAATTGGAT GTAATGATAA TAATGCATGT
ACTGTAGATT CATGTTCAAA TTCAACTGGT TGTACTCATA CACCAATGAA
ATGTGATGAT AATAATCCAT GTACAATTGA CTCATGTTCA AATTCAACTG
GTTGTGTCCA TACCCCAATG AATTGCGACG ATGGTAACTT CTGTACTCTT
GATTCATGTT GTTCAACTGG TTGTACTCAT ACACCAATTA TTATTGATGA
CAATAACCCA TGTACAGTCG ACTCTTGTTG CAATTCAACC GGTGTCGTCC
ATACTCCAGT GGATTGTAAT GATAACAATG TCCTTACTTG TGATTACTGC
AGTATCAAAC AAGGTGGTAA ATGTATTCAT GTTCCAATGA CCCAATGCAA
AACATTTGGA AAATGTGGCG ATGATTTATA AATAATATTT TAAATAATTA
TATAATTCAT TTTTTAAAAA TGAACAACCA AATATTTAAT TTCTCTCTTT
TTTAAAAAAA AAA

Translated Amino Acid Sequence Contig-U12151-1

k*nk**TKKKKKKKLKKKKKPIKYLFIKIAIMNKIYLILILFTFVGIILANVEKAEVSCT
CDENCNDGNKCTLDKCNNGCCSNTPIN---

---KCTQSGGVTHTPIACDDKNACTADSCSNSTGCCHTPITCDDNNACTVDSCSNSTGCC
HTPINVDDNNACTEDKCTQSGGVTHTPIACDDKNACTVDSCSNSTGCVHTPLACDDNNPC
TVDSCSNSTGCCHTPINVDDNNACTEDKCTQSGGVTHTPINCDDNNKCTVDSCSNSTGCC
HTPMSCDDNNPCTVDSCSNSTGCVHTPINVDDNNACTEDKCTQNGGVTHTPIACDDKNAC
TXDSCSNSTGCCHTPLKCDDNNACTVDSCSNSTGCVHTPINVDDNNACTEDKCTQSGGVT
HTPISCDDKNPCTIDSCSNSTGCVHTPMSCDDRNPCTSDFCSWEKGCQHVALSCNDFNAC
TMDSCSNSTGCTHTPIACDDKNACTVDSCSNSTGCVHTPLTCDDNNPCTVDSCSNSTGCC
HTPINVDDHNACTEDKCTQSGGVTHTPIACDDKNACTVDSCSNSTGCCHTPLSCDDNNAC
TVDSCSNSTGCVHTPINVDDNNACTEDKCTQSGGVTHTPIACDDKNACTVDSCSNSTGCX
HTPLNVMIIMHVP*ilfklnwlwpysnqxr**qrmy*r*mysxrwcnsysnxl*x**pms
rrfmfkfnwlcpypq*mlmiimpvlkinvlkmvvllilpiscddlkfmy**fmfkfsrvv
stlqliamiimnvllthvqtqlavvtpqfhvmiiihvp*ipvqiqsgcchtpinvddnnp
ctedkctqsggvthtpigcndnnactvdscsnstgcthtpmkcddnnpctidscsnstgc
vhtpmncddgnfctldsccstgcthtpiiiddnnpctvdsccnstgvvhtpvdcndnnvl
tcdycsikqggkcihvpmtqcktfgkcgddl*iif*iii*fif*k*ttkylislffkkk

Homology Contig-U12151-1 vs CSM-Contig

Sequences producing significant alignments:                        (bits)  Value


Contig-U12151-1 (Contig-U12151-1Q) /CSM_Contig/Conti...  5354  0.0
Contig-U11926-1 (Contig-U11926-1Q) /CSM_Contig/Conti...   131  5e-30
Contig-U14788-1 (Contig-U14788-1Q) /CSM_Contig/Conti...    52  4e-06
Contig-U13311-1 (Contig-U13311-1Q) /CSM_Contig/Conti...    50  1e-05
Contig-U03237-1 (Contig-U03237-1Q) /CSM_Contig/Conti...    46  2e-04
Contig-U13974-1 (Contig-U13974-1Q) /CSM_Contig/Conti...    42  0.003
Contig-U11419-1 (Contig-U11419-1Q) /CSM_Contig/Conti...    42  0.003
Contig-U10800-1 (Contig-U10800-1Q) /CSM_Contig/Conti...    40  0.014
Contig-U13794-1 (Contig-U13794-1Q) /CSM_Contig/Conti...    38  0.053
Contig-U13205-1 (Contig-U13205-1Q) /CSM_Contig/Conti...    38  0.053

Homology Contig-U12151-1 vs DNA

Sequences producing significant alignments:                  (bits) Value  N


(BJ359366) Dictyostelium discoideum cDNA clone:ddc14g05, 5' ...  1366   0.0    3
(BJ366072) Dictyostelium discoideum cDNA clone:ddc37l16, 5' ...  1275   0.0    4
(AU060943) Dictyostelium discoideum slug cDNA, clone SLC332.     1251   0.0    1
(BJ380779) Dictyostelium discoideum cDNA clone:ddc39e08, 3' ...   973   0.0    4
(BJ372775) Dictyostelium discoideum cDNA clone:ddc14g05, 3' ...   942   0.0    6
(BJ407869) Dictyostelium discoideum cDNA clone:dds43m22, 3' ...   880   0.0    8
(BJ383267) Dictyostelium discoideum cDNA clone:ddc52n07, 3' ...   866   0.0    4
(BJ408754) Dictyostelium discoideum cDNA clone:dds46h23, 3' ...   862   0.0    5
(BJ404846) Dictyostelium discoideum cDNA clone:dds29f22, 3' ...   852   0.0    3
(BJ382214) Dictyostelium discoideum cDNA clone:ddc44b06, 3' ...   852   0.0    5

Homology Contig-U12151-1 vs Protein

Sequences producing significant alignments:                      (bits) Value


(P11976) RecName: Full=Prestalk protein; AltName: Full=Extracell...  1248   0.0
A26838(A26838)prestalk protein precursor - slime mold (Dictyoste...  1238   0.0
A27020(A27020)DIF-induced prestalk pDd63 protein precursor - sli...   580   e-164
S44208(S44208) extracellular matrix protein B - Dictyostelium mi...   422   e-116
AC117072_61(AC117072|pid:none) Dictyostelium discoideum chromoso...   420   e-115
AC116984_103(AC116984|pid:none) Dictyostelium discoideum chromos...   411   e-113
(Q54C31) RecName: Full=Protein psiR; Flags: Precursor;                279   5e-73
(Q54C32) RecName: Full=Protein psiQ; Flags: Precursor;                267   1e-69
(Q54CH8) RecName: Full=Protein psiN; Flags: Precursor;                172   5e-41
(Q54G85) RecName: Full=Protein psiJ; Flags: Precursor;                168   9e-40