Homology Contig-U12098-1 vs Protein
Query= Contig-U12098-1 (Contig-U12098-1Q) /CSM_Contig/Contig-U12098-1Q.Seq.d
(723 letters)
Database: nrp_B
3,236,559 sequences; 1,051,180,864 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AE014299_306(AE014299|pid:none) Shewanella oneidensis MR-1, comp... 69 1e-10
CP000931_3992(CP000931|pid:none) Shewanella halifaxensis HAW-EB4... 69 1e-10
CP000444_272(CP000444|pid:none) Shewanella sp. MR-7, complete ge... 69 1e-10
CP000503_3778(CP000503|pid:none) Shewanella sp. W3-18-1, complet... 66 1e-09
CP000563_4021(CP000563|pid:none) Shewanella baltica OS155, compl... 66 1e-09
CP000472_2031(CP000472|pid:none) Shewanella piezotolerans WP3, c... 65 2e-09
CP000606_230(CP000606|pid:none) Shewanella loihica PV-4, complet... 64 5e-09
CP000821_4211(CP000821|pid:none) Shewanella sediminis HAW-EB3, c... 60 9e-08
CP000507_3341(CP000507|pid:none) Shewanella amazonensis SB2B, co... 57 8e-07
AM743169_628(AM743169|pid:none) Stenotrophomonas maltophilia K27... 56 1e-06
CP000083_1132(CP000083|pid:none) Colwellia psychrerythraea 34H, ... 55 3e-06
AM039952_3694(AM039952|pid:none) Xanthomonas campestris pv. vesi... 53 8e-06
AM920689_3757(AM920689|pid:none) Xanthomonas campestris pv. camp... 52 1e-05
CP000388_1423(CP000388|pid:none) Pseudoalteromonas atlantica T6c... 52 2e-05
AP007150_43(AP007150|pid:none) Aspergillus oryzae RIB40 genomic ... 47 5e-04
AE017349_226(AE017349|pid:none) Cryptococcus neoformans var. neo... 47 5e-04
CP000020_1273(CP000020|pid:none) Vibrio fischeri ES114 chromosom... 45 0.002
CP000817_832(CP000817|pid:none) Lysinibacillus sphaericus C3-41,... 44 0.004
(P42946) RecName: Full=Pheromone-regulated membrane protein 10; ... 43 0.009
AY557884_1(AY557884|pid:none) Saccharomyces cerevisiae clone FLH... 43 0.009
FN392319_35(FN392319|pid:none) Pichia pastoris GS115 chromosome ... 42 0.025
(O14267) RecName: Full=Uncharacterized protein C7D4.12c; &CU329... 41 0.033
CP000393_414(CP000393|pid:none) Trichodesmium erythraeum IMS101,... 41 0.043
AP007171_148(AP007171|pid:none) Aspergillus oryzae RIB40 genomic... 41 0.043
CP000099_2594(CP000099|pid:none) Methanosarcina barkeri str. Fus... 40 0.073
AP007161_630(AP007161|pid:none) Aspergillus oryzae RIB40 genomic... 39 0.13
AE016819_308(AE016819|pid:none) Ashbya gossypii (= Eremothecium ... 39 0.16
AM920437_828(AM920437|pid:none) Penicillium chrysogenum Wisconsi... 39 0.21
AJ938182_535(AJ938182|pid:none) Staphylococcus aureus RF122 comp... 39 0.21
FM178379_1537(FM178379|pid:none) Aliivibrio salmonicida LFI1238 ... 37 0.48
AM920427_1453(AM920427|pid:none) Penicillium chrysogenum Wiscons... 37 0.81
AM920428_1542(AM920428|pid:none) Penicillium chrysogenum Wiscons... 36 1.1
BA000038_1066(BA000038|pid:none) Vibrio vulnificus YJ016 DNA, ch... 36 1.1
CP001638_763(CP001638|pid:none) Geobacillus sp. WCH70, complete ... 36 1.1
CP000500_518(CP000500|pid:none) Pichia stipitis CBS 6054 chromos... 36 1.1
AE016796_487(AE016796|pid:none) Vibrio vulnificus CMCP6 chromoso... 36 1.1
AE016822_1576(AE016822|pid:none) Leifsonia xyli subsp. xyli str.... 36 1.4
BC132103_1(BC132103|pid:none) Mus musculus EF hand domain family... 35 2.3
AM295250_237(AM295250|pid:none) Staphylococcus carnosus subsp. c... 35 2.4
CP000875_1092(CP000875|pid:none) Herpetosiphon aurantiacus ATCC ... 35 3.1
U41108_2(U41108|pid:none) Caenorhabditis elegans cosmid C08D8, c... 35 3.1
FM992694_176(FM992694|pid:none) Candida dubliniensis CD36 chromo... 35 3.1
AE001437_2236(AE001437|pid:none) Clostridium acetobutylicum ATCC... 35 3.1
EU684943_1(EU684943|pid:none) Chlamydophila pecorum strain iB2 h... 34 4.0
BA000043_923(BA000043|pid:none) Geobacillus kaustophilus HTA426 ... 34 4.0
AP006716_2147(AP006716|pid:none) Staphylococcus haemolyticus JCS... 34 5.3
CP001618_3458(CP001618|pid:none) Beutenbergia cavernae DSM 12333... 34 5.3
CP001037_4549(CP001037|pid:none) Nostoc punctiforme PCC 73102, c... 33 6.8
BC071224_1(BC071224|pid:none) Mus musculus matrilin 3, mRNA (cDN... 33 6.8
AJ242929_1(AJ242929|pid:none) Mus musculus matn3 gene for matril... 33 6.8
AP006852_180(AP006852|pid:none) Candida albicans genomic DNA, ch... 33 6.9
CP000951_761(CP000951|pid:none) Synechococcus sp. PCC 7002, comp... 33 8.9
>AE014299_306(AE014299|pid:none) Shewanella oneidensis MR-1,
complete genome.
Length = 406
Score = 69.3 bits (168), Expect = 1e-10
Identities = 40/136 (29%), Positives = 66/136 (48%), Gaps = 1/136 (0%)
Frame = +1
Query: 139 WTMFLAVPIAAISFAVQMKVHPRQIWVIIIASALGILCGNWGNKFFGEDVGSFFGSCAIC 318
W ++ AVPI +++ K + ++A + G FFG+ VG FFG+ A+
Sbjct: 269 WAIWSAVPILSMALVFIFKARMQDSPWGVLAGIVAFFSAMLGGHFFGDSVGIFFGALAVG 328
Query: 319 MLGNLYARLSGTSAAVPIMSGIILLVPGSMG-VKXXXXXXXXXXXXXXXFFEGMFMIAAS 495
+ NLYAR A++ ++ GI++LVPGS + +F+I S
Sbjct: 329 VYSNLYARWMKAPASIALLQGIVILVPGSKTYIGLNALISGETMLNQSHIGSQIFLIFMS 388
Query: 496 LTIGLLVANLIVKPNK 543
L GL+ AN++V P +
Sbjct: 389 LIAGLIFANVVVPPRR 404
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 744,262,597
Number of extensions: 15929879
Number of successful extensions: 47242
Number of sequences better than 10.0: 52
Number of HSP's gapped: 46969
Number of HSP's successfully gapped: 53
Length of query: 241
Length of database: 1,051,180,864
Length adjustment: 125
Effective length of query: 116
Effective length of database: 646,610,989
Effective search space: 75006874724
Effective search space used: 75006874724
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 31 (16.5 bits)
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