Dictyostelium discoideum cDNA Contig-U12098-1

Assembled

Chromosomal Location of Contig-U12098-1

Sequence Contig-U12098-1

AACTTGTGTT GTTTTTAACA CATTATTATA AAAAAAAAGC AACAAAATAA
CCAAAAAAAT TATTATATTT TTAGATATTA TTATTTGATT TATAAATATA
TTAAAATTAA AAAAAAAA-- --------NN NNNNNNNTTG GACAATGTTT
TTAGCGGTAC CAATTGCTGC CATATCATTT GCCGTTCAAA TGAAGGTACA
TCCAAGACAA ATTTGGGTAA TCATCATTGC AAGTGCTTTA GGTATACTTT
GTGGTAATTG GGGTAATAAA TTCTTTGGTG AAGATGTTGG TTCTTTCTTT
GGTTCTTGTG CAATTTGTAT GTTGGGTAAC CTTTATGCAA GATTATCAGG
AACTTCTGCT GCAGTTCCAA TTATGAGTGG TATCATTTTA TTAGTTCCTG
GTAGTATGGG TGTAAAAGGT TTAGTTAGTG TATCATCTGG TGATATATCA
GGTGGTATTG TTTTCTTTGA AGGAATGTTT ATGATTGCTG CATCTTTAAC
AATTGGTTTA TTAGTTGCAA ATTTAATTGT TAAACCAAAT AAAGCATTAT
AAATAAAAGT AATAATAGTA ATAATAGTAA TAATAATAAT AAAATAATAA
TTAATTAATA ATAAATAATA TAAATAATTA ATAATTTATA ATAATAATAA
TTATAATATT AAAAAAAGAT TTTTAAAAAT ATAAATAATA AAATTAAAAA
TTTATAAAAT AATAAATATA CAA

Translated Amino Acid Sequence Contig-U12098-1

nlccf*HIIIKKKQQNNQKNYYIFRYYYLIYKYIKIKKKXXX---

---WTMFLAVPIAAISFAVQMKVHPRQIWVIIIASALGILCGNWGNKFFGEDVGSFFGSC
AICMLGNLYARLSGTSAAVPIMSGIILLVPGSMGVKGLVSVSSGDISGGIVFFEGMFMIA
ASLTIGLLVANLIVKPNKAL*ikviiviiviiiik**linnk*yk*liiynnnnynikkr
flki*iiklkiykiiniq

Homology Contig-U12098-1 vs CSM-Contig

Sequences producing significant alignments:                        (bits)  Value


Contig-U12098-1 (Contig-U12098-1Q) /CSM_Contig/Conti...   791  0.0
Contig-U10346-1 (Contig-U10346-1Q) /CSM_Contig/Conti...    40  0.003
Contig-U14890-1 (Contig-U14890-1Q) /CSM_Contig/Conti...    38  0.013
Contig-U11679-1 (Contig-U11679-1Q) /CSM_Contig/Conti...    38  0.013
Contig-U10328-1 (Contig-U10328-1Q) /CSM_Contig/Conti...    38  0.013
Contig-U14837-1 (Contig-U14837-1Q) /CSM_Contig/Conti...    36  0.051
Contig-U14703-1 (Contig-U14703-1Q) /CSM_Contig/Conti...    36  0.051
Contig-U14538-1 (Contig-U14538-1Q) /CSM_Contig/Conti...    36  0.051
Contig-U12088-1 (Contig-U12088-1Q) /CSM_Contig/Conti...    36  0.051

Homology Contig-U12098-1 vs DNA

Sequences producing significant alignments:                  (bits) Value  N


(BJ407399) Dictyostelium discoideum cDNA clone:dds38n10, 3' ...   755   0.0    1
(BJ384494) Dictyostelium discoideum cDNA clone:ddc49m13, 3' ...   424   e-114  1
(AU034523) Dictyostelium discoideum slug cDNA, clone SLC382.       58   2e-15  4
(C25557) Dictyostelium discoideum slug cDNA, clone SLA296.         58   5e-15  4
(BJ407306) Dictyostelium discoideum cDNA clone:dds38k02, 3' ...    58   5e-15  4
(BJ445250) Dictyostelium discoideum cDNA clone:ddv58m20, 3' ...    58   7e-15  4
(AU034130) Dictyostelium discoideum slug cDNA, clone SLB778.       58   7e-15  4
(BJ408333) Dictyostelium discoideum cDNA clone:dds45p11, 3' ...    58   8e-15  4
(BJ407614) Dictyostelium discoideum cDNA clone:dds43i06, 3' ...    58   8e-15  4
(AU052901) Dictyostelium discoideum slug cDNA, clone SLF291.       58   5e-04  1

Homology Contig-U12098-1 vs Protein

Sequences producing significant alignments:                      (bits) Value


AE014299_306(AE014299|pid:none) Shewanella oneidensis MR-1, comp...    69   1e-10
CP000931_3992(CP000931|pid:none) Shewanella halifaxensis HAW-EB4...    69   1e-10
CP000444_272(CP000444|pid:none) Shewanella sp. MR-7, complete ge...    69   1e-10
CP000503_3778(CP000503|pid:none) Shewanella sp. W3-18-1, complet...    66   1e-09
CP000563_4021(CP000563|pid:none) Shewanella baltica OS155, compl...    66   1e-09
CP000472_2031(CP000472|pid:none) Shewanella piezotolerans WP3, c...    65   2e-09
CP000606_230(CP000606|pid:none) Shewanella loihica PV-4, complet...    64   5e-09
CP000821_4211(CP000821|pid:none) Shewanella sediminis HAW-EB3, c...    60   9e-08
CP000507_3341(CP000507|pid:none) Shewanella amazonensis SB2B, co...    57   8e-07
AM743169_628(AM743169|pid:none) Stenotrophomonas maltophilia K27...    56   1e-06