Dictyostelium discoideum cDNA Contig-U12067-1

Assembled

Chromosomal Location of Contig-U12067-1

Sequence Contig-U12067-1

AAGAAGCAGC TAAAGAAGCT CTCTCTCATA TTGGTTCAGT CATTAGAAAT
CCAGAAATTC AAATTCATGT ACCATTATTA CTTCAAACCT ATGATGATCC
AGAAATTCAT TCAAAAGAAT TATTANGAGA ATCTTTTATC AACCAATTAC
GTTCATACAA TTGATCCAGC TTCACTCTCT TTATTACTTC CAATTTTAGA
GAGAACTCTT AAAGAGAGAA GTAGTGAATT AAAGAAAATG TCTTGTCAAA
TCGTTGGTAA TCTTTGTTCA TTAACTGAAC CAAAAGATTT AGTACCTTAT
TTAAATATTT TAATGCCAGT TATGAAAACC GTACTTTTAG ATCCAATTCC
AGAGGTTAGA GCCATTTGTG CACGTGCACT TGGTTTATTA GTTCGTGGTA
TGGGTGAAGA GAATTTCTCA ACTCTTATTC CTTGGTTATT GGAAACCGTT
AAATCTGATC AAGGTGCTGT CGAAAGAAGT GGTGCTGCTC AAGGTTTATC
AGAGGTTTTA GCTTCATTAG ATATTAGTAG ATTCAATTCA TTAATCAATG
AATTGTTAGC AATGACCAAT TCACCACGTC CACATGTTAG AGAAGGTATT
TTATCAATCT TTATTTTTAC ACCAATTTCT TTGGGTGATC TTTTCCTTCC
ATATCTTCCA AAAGTTTTAC CACAAGTTTT GAAAGGTTTA GCTGATGATT
CTGATCCAGT TCGTGAAGTT TGTATGAGAT GTGGTCAATC GATTGTTTTA
CAATTTGCAG TAACAGGTAT TGAAGTGATT GTTCCAGCCT TAGAGAAAGT
ATTATTCCAT GAAAATTGGA GAATTCGTTT ATCTTGTGTT CAATTATTTG
GTGATTTATT ATTCAAATTA GCAGGTACAA CCGCTCAAGC AAGTCCAATC
AAATAATAGT TCTTATAATG CTAAAGATGA TGATGATGAT GAACCAGGTT
CAAGTGGTAA TGATATTCAA AAGATTTTAG GTAAAGAAAG ATTAGGTCGT
ATTCTTTCAT CATTGTATAT GATGAGATTT GATAATAATT CATCAGTTCG
TCAAAAGGTA TTATTAATTT GGAAATATAT TGTTAGTAAT ACACCAAAGA
CACTTCGTGA GATTTTACCA ACTCTTATTG AAATGATTAT TAGTTCCATT
GGTTCAAATA ATGTTGAAAA GAGACAAATT TCCGCTAAAA CTTTGGGTGA
TATTGTTAGT AAACTTAGTG ATCGTATTTT ACCAGAGATT TTACCAATTC
TTGAACGTGG TCTTAGATCA GAACTCGAAG AAACTAGACA AGGTGTTTGT
ATTGGTCTTA GTGAAGTTAT TTCCTCTGCA AAGACTCAAT TACTTCCATA
CCTTTCAAGT GTTGTAACTT GTATCACCAA AGCATTATGT GATCCACTCA
TTGATGTTAG AGAGGCAGCC CGCTAAAGCT TTCGATCATC TCTATCATAC
TTTTGGTTCA AAAGCTAGTA ATGAAATTTT ACCACAACTT ATTCAACTCT
TGGATAATTC CAACAATAAG GATCTTGCTG GTTATGCTTT GGGTGGTCTT
CGTCAAGTTA TTTTAGTTAG AAGTAGTATT GTATTGCCTG TACTTATTCC
AAAACTTTTA AGTAGACCTA TTTCAACAAG TAATGTCACT GCTTTATCAT
CACTTGCCGC TGATGCTGGT GAAGGTCTTT ACGTTCATCT TTCA------
----TTGAAA AGAAACCAAA AAGGTGAACA AGCTACACTC GATAAAGCAA
TCGCCACCAT TGTGGACTTC CTTTATCAAC CTTCCGATGA TCTCAGATCA
ATGGTCGCTC AAACTATTGG TGCCTCTTCA AAATGTTTTA CTTCTCTCAC
TGAATTGAAT CAATTCATTA AAACCAATCT CATCTCACCT TCTCAATCAG
TACTCTCTCG TTATGGTAAA TCATTGGCAT TGGGTGAAAT TTTCAAAGCA
TCTGGTAAGA ATTTAATCGA TTCTCAATCA CCAAATATGC CAACCATCAT
TAAAATCATT CAAACCGATT GTCGTGATGA AAAAGGTCCA ATTCGTGAAT
CCTCTGCTTA TTTGGCTGAA GCTATTTTAG TTGCTTCGCC TTTAACCTAT
GCAAAGGATT TAGTACCTTC CATTTGTCAT CTCATTGGTG ATCAATCATC
TTCCGTATCA ATTAGTGCTC TCAATGTTAT TAAACGTTTC TGTAAATCAA
ATCAACAATT ATCAAGACAA TATTTACGTG ATATTGTCGT ACCAACTATG
AATAGATTAA AAGAAAGAAC TAATTTACCT CTAAAATTAG CTGCTGAAAG
AACTTTAGTT CATTCACTTC AAATCTTTAA AGAATCCATT GTAATGGATG
ATTTAATTAA ACAATTAGAA TTATCTGGTG ATTCATCAAT GGCAAATTCT
TTAATTGATT ATCATAAAAG AGTTTTAAGA AATTATCAC

Translated Amino Acid Sequence Contig-U12067-1

eaakealshigsvirnpeiqihvplllqtyddpeihskellxesfinqlrsyn*ssftlf
itsnfrens*rek**ikenvlsnrw*slfin*tkrfstlfkyfnasyenrtfrsnsrg*s
hlctctwfisswyg*reflnsyslvignr*i*srccrkkwccsrfirgfsfiry**iqfi
nq*ivsndqfttstc*rryfinlyfytnffg*sfpsissksfttsferfs**f*sss*sl
yemwsidcfticsnry*sdcsslresiip*klensfilcsiiw*fiiqisrynrssksnq
iivlimlkmmmmmnqvqvvmifkrf*vkkd*vvffhhci**dliiihqfvkryy*fgnil
lvihqrhfvrfyqlllk*llvplvqimlkrdkfplklwvillvnlvivfyqrfyqflnvv
ldqnskkldkvfvlvlvklfplqrlnyfhtfqvl*LVSPKHYVIHSLMLERQPAKAFDHL
YHTFGSKASNEILPQLIQLLDNSNNKDLAGYALGGLRQVILVRSSIVLPVLIPKLLSRPI
STSNVTALSSLAADAGEGLYVHLS---

---LKRNQKGEQATLDKAIATIVDFLYQPSDDLRSMVAQTIGASSKCFTSLTELNQFIKT
NLISPSQSVLSRYGKSLALGEIFKASGKNLIDSQSPNMPTIIKIIQTDCRDEKGPIRESS
AYLAEAILVASPLTYAKDLVPSICHLIGDQSSSVSISALNVIKRFCKSNQQLSRQYLRDI
VVPTMNRLKERTNLPLKLAAERTLVHSLQIFKESIVMDDLIKQLELSGDSSMANSLIDYH
KRVLRNYH

Homology Contig-U12067-1 vs CSM-Contig

Sequences producing significant alignments:                        (bits)  Value


Contig-U12067-1 (Contig-U12067-1Q) /CSM_Contig/Conti...  2908  0.0
Contig-U13032-1 (Contig-U13032-1Q) /CSM_Contig/Conti...    42  0.003
Contig-U04169-1 (Contig-U04169-1Q) /CSM_Contig/Conti...    42  0.003
Contig-U12507-1 (Contig-U12507-1Q) /CSM_Contig/Conti...    40  0.011
Contig-U13074-1 (Contig-U13074-1Q) /CSM_Contig/Conti...    38  0.044
Contig-U10354-1 (Contig-U10354-1Q) /CSM_Contig/Conti...    38  0.044
Contig-U05876-1 (Contig-U05876-1Q) /CSM_Contig/Conti...    38  0.044
Contig-U14387-1 (Contig-U14387-1Q) /CSM_Contig/Conti...    36  0.17
Contig-U12577-1 (Contig-U12577-1Q) /CSM_Contig/Conti...    36  0.17
Contig-U12372-1 (Contig-U12372-1Q) /CSM_Contig/Conti...    36  0.17

Homology Contig-U12067-1 vs DNA

Sequences producing significant alignments:                  (bits) Value  N


(BJ436463) Dictyostelium discoideum cDNA clone:ddv31b12, 3' ...  1402   0.0    1
(BJ438234) Dictyostelium discoideum cDNA clone:ddv36e20, 3' ...  1390   0.0    2
(BJ437150) Dictyostelium discoideum cDNA clone:ddv33i12, 3' ...  1388   0.0    2
(BJ441759) Dictyostelium discoideum cDNA clone:ddv47d19, 3' ...  1326   0.0    2
(BJ406387) Dictyostelium discoideum cDNA clone:dds35i01, 3' ...  1326   0.0    2
(BJ393357) Dictyostelium discoideum cDNA clone:dds31e03, 5' ...  1294   0.0    1
(BJ445816) Dictyostelium discoideum cDNA clone:ddv60a23, 3' ...  1241   0.0    2
(BJ443378) Dictyostelium discoideum cDNA clone:ddv52a24, 3' ...  1237   0.0    2
(BJ443710) Dictyostelium discoideum cDNA clone:ddv53i20, 3' ...  1223   0.0    1
(BJ436933) Dictyostelium discoideum cDNA clone:ddv32n13, 3' ...  1221   0.0    2

Homology Contig-U12067-1 vs Protein

Sequences producing significant alignments:                      (bits) Value


(Q54WR2) RecName: Full=Translational activator gcn1; AltName: Fu...   498   0.0
U77700_1(U77700|pid:none) Homo sapiens HsGCN1 mRNA, partial cds.      255   e-128
D86973_1(D86973|pid:none) Homo sapiens mRNA for KIAA0219 gene, p...   254   e-128
(Q99736) RecName: Full=Translational activator GCN1; AltName: Fu...   254   e-128
AC004812_3(AC004812|pid:none) Homo sapiens PAC clone 267D11 from...   254   e-128
BC169100_1(BC169100|pid:none) Rattus norvegicus GCN1 general con...   254   e-128
BC168513_1(BC168513|pid:none) Danio rerio cDNA clone IMAGE:69620...   255   e-128
AK147257_1(AK147257|pid:none) Mus musculus cDNA, RIKEN full-leng...   254   e-128
AB093217_1(AB093217|pid:none) Mus musculus mRNA for mKIAA0219 pr...   254   e-128
BC056933_1(BC056933|pid:none) Mus musculus GCN1 general control ...   254   e-128