Homology Contig-U12067-1 vs DNA
Query= Contig-U12067-1 (Contig-U12067-1Q) /CSM_Contig/Contig-U12067-1Q.Seq.d
(2439 letters)
Database: ddbj_A
108,600,042 sequences; 106,710,029,556 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value N
(BJ436463) Dictyostelium discoideum cDNA clone:ddv31b12, 3' ... 1402 0.0 1
(BJ438234) Dictyostelium discoideum cDNA clone:ddv36e20, 3' ... 1390 0.0 2
(BJ437150) Dictyostelium discoideum cDNA clone:ddv33i12, 3' ... 1388 0.0 2
(BJ441759) Dictyostelium discoideum cDNA clone:ddv47d19, 3' ... 1326 0.0 2
(BJ406387) Dictyostelium discoideum cDNA clone:dds35i01, 3' ... 1326 0.0 2
(BJ393357) Dictyostelium discoideum cDNA clone:dds31e03, 5' ... 1294 0.0 1
(BJ445816) Dictyostelium discoideum cDNA clone:ddv60a23, 3' ... 1241 0.0 2
(BJ443378) Dictyostelium discoideum cDNA clone:ddv52a24, 3' ... 1237 0.0 2
(BJ443710) Dictyostelium discoideum cDNA clone:ddv53i20, 3' ... 1223 0.0 1
(BJ436933) Dictyostelium discoideum cDNA clone:ddv32n13, 3' ... 1221 0.0 2
(BJ423009) Dictyostelium discoideum cDNA clone:ddv47d19, 5' ... 1193 0.0 1
(BJ421237) Dictyostelium discoideum cDNA clone:ddv41m04, 5' ... 898 0.0 2
(BJ417984) Dictyostelium discoideum cDNA clone:ddv31b12, 5' ... 823 0.0 3
(BJ426936) Dictyostelium discoideum cDNA clone:ddv60a23, 5' ... 735 0.0 3
(BJ418412) Dictyostelium discoideum cDNA clone:ddv32n13, 5' ... 676 0.0 2
(BJ420243) Dictyostelium discoideum cDNA clone:ddv38n17, 5' ... 1007 0.0 2
(BJ424525) Dictyostelium discoideum cDNA clone:ddv52a24, 5' ... 589 0.0 4
(BJ424870) Dictyostelium discoideum cDNA clone:ddv53i20, 5' ... 811 0.0 3
(BJ439652) Dictyostelium discoideum cDNA clone:ddv41m04, 3' ... 706 0.0 2
(BJ405241) Dictyostelium discoideum cDNA clone:dds31e03, 3' ... 940 0.0 1
(BJ418600) Dictyostelium discoideum cDNA clone:ddv33i12, 5' ... 266 1e-92 2
(BJ440056) Dictyostelium discoideum cDNA clone:ddv42b18, 3' ... 353 2e-92 1
(BJ419659) Dictyostelium discoideum cDNA clone:ddv36e20, 5' ... 333 2e-86 1
(BJ421399) Dictyostelium discoideum cDNA clone:ddv42b18, 5' ... 216 7e-62 2
(AC119982) Mus musculus chromosome 19, clone RP24-498L9, com... 56 0.007 1
(AC118724) Mus musculus, clone RP24-160H20, complete sequence. 56 0.007 1
(AZ931609) 474.dhz86f06.s1 Saccharomyces unisporus NRRL Y-15... 42 0.089 3
(ED186094) AUAC-aah66a04.g1 Ascaris suum whole genome shotgu... 50 0.20 2
(BH167468) ENTSH94TF Entamoeba histolytica Sheared DNA Entam... 50 0.43 1
(BH163191) ENTTE33TR Entamoeba histolytica Sheared DNA Entam... 50 0.43 1
(AZ531303) ENTCH17TR Entamoeba histolytica Sheared DNA Entam... 50 0.43 1
(ED460729) AUAC-aao05g05.g1 Ascaris suum whole genome shotgu... 50 0.43 1
(ED450392) AUAC-aan56c12.g1 Ascaris suum whole genome shotgu... 50 0.43 1
(ED393242) AUAC-aai25f10.g1 Ascaris suum whole genome shotgu... 50 0.43 1
(CE750026) tigr-gss-dog-17000369595334 Dog Library Canis lup... 36 1.2 2
(AC153438) Bos taurus clone CH240-20M11, WORKING DRAFT SEQUE... 48 1.7 1
(AC223034) Bos taurus clone CH240-431K1, WORKING DRAFT SEQUE... 48 1.7 1
(AC237498) Sterkiella histriomuscorum chromosome unknown clo... 36 2.5 6
(EA102818) Sequence 201 from patent US 7195870. 40 3.2 3
(BD453058) Diagnosis of Diseases Associated with tumor suppr... 40 3.2 3
(AX346986) Sequence 2057 from Patent WO0200928. 40 3.2 3
(AX344876) Sequence 301 from Patent WO0200927. 40 3.2 3
(AX323809) Sequence 297 from Patent WO0192565. 40 3.2 3
(AX278038) Sequence 201 from Patent WO0177375. 40 3.2 3
(AX251537) Sequence 505 from Patent WO0168912. 40 3.2 3
(GM996157) Sequence 297 from Patent EP2014776. 40 3.2 3
(GP410009) Sequence 56741 from patent US 7511127. 36 3.9 3
(GP123184) Sequence 56741 from patent US 7468248. 36 3.9 3
(HB551099) Sequence 56741 from Patent WO2009089296. 36 3.9 3
(BX469894) Zebrafish DNA sequence from clone CH211-212N23 in... 46 6.7 1
(AL928691) Zebrafish DNA sequence from clone CH211-51H20 in ... 46 6.7 1
(AC135378) Mus musculus BAC clone RP24-284L24 from chromosom... 46 6.7 1
(AL356461) Human DNA sequence from clone RP11-180D15 on chro... 46 6.7 1
(AC108477) Homo sapiens BAC clone RP11-499F19 from 4, comple... 46 6.7 1
(AC158020) Bos taurus clone CH240-154K3, *** SEQUENCING IN P... 46 6.7 1
(AC156146) Bos taurus clone CH240-47K24, WORKING DRAFT SEQUE... 46 6.7 1
(CT027722) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 46 6.7 1
(AC230706) Bos taurus clone CH240-501J1, WORKING DRAFT SEQUE... 46 6.7 1
(AC170273) Bos taurus clone CH240-261K14, WORKING DRAFT SEQU... 46 6.7 1
(AC166503) Bos taurus clone CH240-76M23, WORKING DRAFT SEQUE... 46 6.7 1
(GS189371) DH020B11.F Brachypodium distachyon Bd21 HindIII B... 46 6.7 1
(ER515768) 1093015501046 Global-Ocean-Sampling_GS-35-01-01-1... 46 6.7 1
(ER477762) 1093015246529 Global-Ocean-Sampling_GS-35-01-01-1... 46 6.7 1
(ER425785) 1092963749017 Global-Ocean-Sampling_GS-35-01-01-1... 46 6.7 1
(ER418234) 1092963685298 Global-Ocean-Sampling_GS-35-01-01-1... 46 6.7 1
(EJ837352) 1093017674059 Global-Ocean-Sampling_GS-30-02-01-1... 46 6.7 1
(AQ279825) CITBI-E1-2513H10.TR CITBI-E1 Homo sapiens genomic... 46 6.7 1
(EJ776348) 1093004100344 Global-Ocean-Sampling_GS-30-02-01-1... 46 6.7 1
(EJ739661) 1092962008792 Global-Ocean-Sampling_GS-30-02-01-1... 46 6.7 1
(EJ119217) 1092343365276 Global-Ocean-Sampling_GS-27-01-01-1... 46 6.7 1
(EJ082492) 1095460056332 Global-Ocean-Sampling_GS-26-01-01-1... 46 6.7 1
(EJ060047) 1095456058753 Global-Ocean-Sampling_GS-26-01-01-1... 46 6.7 1
(EI723739) 2B421019N11TF BAC library from breast tumor sampl... 46 6.7 1
(ED196016) AUAC-aas29d10.b1 Ascaris suum whole genome shotgu... 46 6.7 1
(CR973157) Homo sapiens BAC end sequence of RZPDB737B022060D... 46 6.7 1
(EG408510) SAAH-aac59a09.b1 Agen 0058 Schmidtea mediterranea... 46 6.7 1
(DV445909) CV01017A2F05.f1 CV01-normalized library Manihot e... 46 6.7 1
(DN316509) PL06023B2H02 cDNA from juvenile hermaphodites Sch... 46 6.7 1
(DN316491) PL06023B2F07 cDNA from juvenile hermaphodites Sch... 46 6.7 1
(DN316412) PL06023B1G09 cDNA from juvenile hermaphodites Sch... 46 6.7 1
(DN315518) PL06021A2A05 cDNA from juvenile hermaphodites Sch... 46 6.7 1
(DN315028) PL06019B2G04 cDNA from juvenile hermaphodites Sch... 46 6.7 1
(DN313730) PL06016A2G03 cDNA from juvenile hermaphodites Sch... 46 6.7 1
(DN313377) PL06015B1A01 cDNA from juvenile hermaphodites Sch... 46 6.7 1
(DN310868) PL06008B1E03 cDNA from juvenile hermaphodites Sch... 46 6.7 1
(DN310825) PL06008B1A06 cDNA from juvenile hermaphodites Sch... 46 6.7 1
(DN310702) PL06008A1F10 cDNA from juvenile hermaphodites Sch... 46 6.7 1
(DN310259) PL06006B2H04 cDNA from juvenile hermaphodites Sch... 46 6.7 1
(DN310218) PL06006B2D07 cDNA from juvenile hermaphodites Sch... 46 6.7 1
(DN310153) PL06006B1G02 cDNA from juvenile hermaphodites Sch... 46 6.7 1
(DN309832) PL06005B2C02 cDNA from juvenile hermaphodites Sch... 46 6.7 1
(DN309420) PL06004B1G07 cDNA from juvenile hermaphodites Sch... 46 6.7 1
(DN309348) PL06004B1A03 cDNA from juvenile hermaphodites Sch... 46 6.7 1
(DN309270) PL06004A2B07 cDNA from juvenile hermaphodites Sch... 46 6.7 1
(DN306620) PL05011B2C01 cDNA from sexually mature hermaphodi... 46 6.7 1
(DN298632) PL04013A2G11 cDNA from sexually mature hermaphodi... 46 6.7 1
(DN295633) PL03020A2H11 cDNA from sexually mature hermaphodi... 46 6.7 1
(DN295214) PL03019A2B12 cDNA from sexually mature hermaphodi... 46 6.7 1
(DN295087) PL03018B2G07 cDNA from sexually mature hermaphodi... 46 6.7 1
(DN294960) PL03018B1D01 cDNA from sexually mature hermaphodi... 46 6.7 1
(DN291245) PL030006B10D11 cDNA from sexually mature hermapho... 46 6.7 1
(DN290901) PL030005A20G04 cDNA from sexually mature hermapho... 46 6.7 1
(DN290281) PL030003A20H08 cDNA from sexually mature hermapho... 46 6.7 1
(BI312095) EST5313845 GESD Medicago truncatula cDNA clone pG... 46 6.7 1
(GE841191) 111608_EST083 SSH library for Stylosanthes guiane... 46 6.7 1
(FK932923) EST_lsal_evj_953046 lsalevj mixed_tissue_mixed_st... 46 6.7 1
(FK932922) EST_lsal_evj_944214 lsalevj mixed_tissue_mixed_st... 46 6.7 1
(CP000771) Fervidobacterium nodosum Rt17-B1, complete genome. 46 6.7 1
(AE009951) Fusobacterium nucleatum subsp. nucleatum ATCC 255... 46 6.7 1
(EI767187) CHORI510R35I13TR BAC library from the primary ova... 38 9.5 2
>(BJ436463) Dictyostelium discoideum cDNA clone:ddv31b12, 3' end,
single read.
Length = 711
Score = 1402 bits (707), Expect = 0.0
Identities = 709/710 (99%)
Strand = Plus / Minus
Query: 1730 aagctacactcgataaagcaatcgccaccattgtggacttcctttatcaaccttccgatg 1789
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 711 aagctacactcgataaagcaatcgccaccattgtggacttcctttatcaaccttccgatg 652
Query: 1790 atctcagatcaatggtcgctcaaactattggtgcctcttcaaaatgttttacttctctca 1849
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 651 atctcagatcaatggtcgctcaaactattggtgcctcttcaaaatgttttacttctctca 592
Query: 1850 ctgaattgaatcaattcattaaaaccaatctcatctcaccttctcaatcagtactctctc 1909
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 591 ctgaattgaatcaattcattaaaaccaatctcatctcaccttctcaatcagtactctctc 532
Query: 1910 gttatggtaaatcattggcattgggtgaaattttcaaagcatctggtaagaatttaatcg 1969
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 531 gttatggtaaatcattggcattgggtgaaattttcaaagcatctggtaagaatttaatcg 472
Query: 1970 attctcaatcaccaaatatgccaaccatcattaaaatcattcaaaccgattgtcgtgatg 2029
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 471 attctcaatcaccaaatatgccaaccatcattaaaatcattcaaaccgattgtcgtgatg 412
Query: 2030 aaaaaggtccaattcgtgaatcctctgcttatttggctgaagctattttagttgcttcgc 2089
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 411 aaaaaggtccaattcgtgaatcctctgcttatttggctgaagctattttagttgcttcgc 352
Query: 2090 ctttaacctatgcaaaggatttagtaccttccatttgtcatctcattggtgatcaatcat 2149
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 ctttaacctatgcaaaggatttagtaccttccatttgtcatctcattggtgatcaatcat 292
Query: 2150 cttccgtatcaattagtgctctcaatgttattaaacgtttctgtaaatcaaatcaacaat 2209
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 291 cttccgtatcaattagtgctctcaatgttattaaacgtttctgtaaatcaaatcaacaat 232
Query: 2210 tatcaagacaatatttacgtgatattgtcgtaccaactatgaatagattaaaagaaagaa 2269
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 231 tatcaagacaatatttacgtgatattgtcgtaccaactatgaatagattaaaagaaagaa 172
Query: 2270 ctaatttacctctaaaattagctgctgaaagaactttagttcattcacttcaaatcttta 2329
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 171 ctaatttacctctaaaattagctgctgaaagaactttagttcattcacttcaaatcttta 112
Query: 2330 aagaatccattgtaatggatgatttaattaaacaattagaattatctggtgattcatcaa 2389
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 111 aagaatccattgtaatggatgatttaattaaacaattagaattatctggtgattcatcaa 52
Query: 2390 tggcaaattctttaattgattatcataaaagagttttaagaaattatcac 2439
||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 51 tggcaaattctttaattnattatcataaaagagttttaagaaattatcac 2
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Number of Sequences: 108600042
Number of Hits to DB: 3,069,604,889
Number of extensions: 172975063
Number of successful extensions: 13122698
Number of sequences better than 10.0: 110
Length of query: 2439
Length of database: 106,710,029,556
Length adjustment: 25
Effective length of query: 2414
Effective length of database: 103,995,028,506
Effective search space: 251043998813484
Effective search space used: 251043998813484
X1: 11 (21.8 bits)
S2: 23 (46.1 bits)
Dictyostelium discoideum cDNA Project Home