Dictyostelium discoideum cDNA Contig-U12066-1

Assembled

Chromosomal Location of Contig-U12066-1

Sequence Contig-U12066-1

TTTATTAATT CATCTTACTA TTCTAAATCT TCTCTTATAT TTGATGTAAT
TGATACACAA GTTTCATTTA ATATGACTGA GAATTGGGTT TATAATGGAA
TGCTCCAAGC AATCTTAAAT GGAAATGAAG TTTTTGAATA CGGAAATATT
GAAATTGTTC CAATTTTAAA TGTTTTCACG GTTCCAAATA ATAACTTGGG
AACATCATAC CCATTCGAAG CCACGATTGG AGGGTACCAT TTTGATGCAT
CTTTAGTTGG TGCTGATATT CTAATGGATG GAAATAATAT TACCAATTGT
AATGTAACAT CGAGAGCAAA TGATTTTCCA ATTGGATATA GATGTTTAAT
ACCTCCAGGG GTTGGAAGCT TTAATATAAC TGTAAAAGTT GCAAGTAAAA
TTTCAAAATT CATTAACTAA ATGGTACAAC CCCCCAAGAT CGACAAGTAT
CGGATCCTGT ATTTTCATTT TCTAATAGTT CAACGACAAT TAGAGGAAAT
GATTTCCAAA GTGGTGCATC TGATAAAACA ATTGTAACAT TTGATGGTGT
TGAAGCAGAA GTTATTTCTT CATCATACGA TTCAATAGTT GTTAAACATG
ACAATTC--- -------NNN NNNNNNCTAT TTCAACGGTA CATTTGAAAA
TGATTCAGTT CAAGTAGAAT TAGATGTAAC TTATTATAAA GATGAAGAAA
ATATTGATTT TGCAGGCGAC TCAATTTTAA TACCATCAAA TTCAATGAAA
TATATAATTT TAATTTCAAA TTGGAATTTT ACATCATCAA CAAATAATCT
ACAAGTAATT TATGATTCTC AAACAACAGC ATACTATGAT GATGGTTGTG
ATATTATTCA ATCAAATAGT AGTTCAAATG TAAATGAAGG ATCAAAAATT
TCAGAATCAG TTACATGGTT CCAAGTAGTA TCTGGTAATT CTGCAATGGA
TGCAAAGTTT TCACGTAGAA TGTTTGTTGA TGAAAAAGTA AGAATGGCAA
GTGTTTCAAT ATTAGACCCA ACTGATCCAT TATATAGCTT AACAAATCGA
TCTGATACAT TCAATAAATT AATTGCAATC ACAACTCCAT ACTTTAAATC
AAATGTTAAA TTAGATCCAT CATTTAGTTC ATTAATTCAA CCATCAACAT
CAACATCAGA ATGTGATGAA AATAAATGGA AAATCCCAGT AATCGCTGTT
TTGTGTTCAG TTGGAGGTGC CACTATAATT GGAATTTCCG CTGCAATGAT
TTACAAATCA TAAAGAAATA AACAAATAGT TTTAAAACTC TCTTCAAAAT
TAAAAAATTT TAAATAATAA AATAAAATAA ATAATAATTA AAAACGT

Translated Amino Acid Sequence Contig-U12066-1

y*fillf*ifsyi*cn*ytsfi*yd*elgl*wnapsnlkwk*sf*irky*ncsnfkcfhg
sk**lgniipirshdwrvpf*cifswc*ysngwk*yyql*cniesk*fsnwi*mfntsrg
wkl*yncksck*nfkih*LNGTTPQDRQVSDPVFSFSNSSTTIRGNDFQSGASDKTIVTF
DGVEAEVISSSYDSIVVKHDNSXX---

---YFNGTFENDSVQVELDVTYYKDEENIDFAGDSILIPSNSMKYIILISNWNFTSSTNN
LQVIYDSQTTAYYDDGCDIIQSNSSSNVNEGSKISESVTWFQVVSGNSAMDAKFSRRMFV
DEKVRMASVSILDPTDPLYSLTNRSDTFNKLIAITTPYFKSNVKLDPSFSSLIQPSTSTS
ECDENKWKIPVIAVLCSVGGATIIGISAAMIYKS*rnkqivlklssklknfk**nkinnn
*kr

Homology Contig-U12066-1 vs CSM-Contig

Sequences producing significant alignments:                        (bits)  Value


Contig-U12066-1 (Contig-U12066-1Q) /CSM_Contig/Conti...  1326  0.0
Contig-U11414-1 (Contig-U11414-1Q) /CSM_Contig/Conti...    40  0.006
Contig-U11193-1 (Contig-U11193-1Q) /CSM_Contig/Conti...    40  0.006
Contig-U10756-1 (Contig-U10756-1Q) /CSM_Contig/Conti...    38  0.024
Contig-U06322-1 (Contig-U06322-1Q) /CSM_Contig/Conti...    38  0.024
Contig-U14515-1 (Contig-U14515-1Q) /CSM_Contig/Conti...    36  0.095
Contig-U14343-1 (Contig-U14343-1Q) /CSM_Contig/Conti...    36  0.095
Contig-U14064-1 (Contig-U14064-1Q) /CSM_Contig/Conti...    36  0.095
Contig-U11686-1 (Contig-U11686-1Q) /CSM_Contig/Conti...    36  0.095
Contig-U11216-1 (Contig-U11216-1Q) /CSM_Contig/Conti...    36  0.095

Homology Contig-U12066-1 vs DNA

Sequences producing significant alignments:                  (bits) Value  N


(BJ405188) Dictyostelium discoideum cDNA clone:dds30j22, 3' ...  1245   0.0    1
(BJ404329) Dictyostelium discoideum cDNA clone:dds28n04, 3' ...  1235   0.0    1
(BJ393307) Dictyostelium discoideum cDNA clone:dds30j22, 5' ...  1203   0.0    1
(AC022430) Homo sapiens chromosome 5 clone CTD-2581L3, compl...    44   7e-04  5
(GR585255) CCAA388.g1 CCAA Dictyostelium purpureum 0 hr star...    32   0.016  4
(AC007394) Homo sapiens BAC clone RP11-489G12 from 2, comple...    52   0.060  1
(AL645686) Mouse DNA sequence from clone RP23-330D1 on chrom...    50   0.24   1
(AE006641) Sulfolobus solfataricus P2, complete genome.            50   0.24   1
(CP000123) Mycoplasma capricolum subsp. capricolum ATCC 2734...    36   0.24   17
(AC121671) Rattus norvegicus clone CH230-103L20, *** SEQUENC...    38   0.50   2

Homology Contig-U12066-1 vs Protein

Sequences producing significant alignments:                      (bits) Value


AC115680_4(AC115680|pid:none) Dictyostelium discoideum chromosom...    76   3e-12
AC116924_8(AC116924|pid:none) Dictyostelium discoideum chromosom...    73   2e-11
AC115605_7(AC115605|pid:none) Dictyostelium discoideum chromosom...    72   6e-11
AC116963_25(AC116963|pid:none) Dictyostelium discoideum chromoso...    70   2e-10
AC116100_9(AC116100|pid:none) Dictyostelium discoideum chromosom...    69   5e-10
AC116984_134(AC116984|pid:none) Dictyostelium discoideum chromos...    65   4e-09
AC115612_9(AC115612|pid:none) Dictyostelium discoideum chromosom...    64   1e-08
AC117072_39(AC117072|pid:none) Dictyostelium discoideum chromoso...    62   5e-08
AC117075_65(AC117075|pid:none) Dictyostelium discoideum chromoso...    62   5e-08
AC117081_43(AC117081|pid:none) Dictyostelium discoideum chromoso...    62   5e-08