Homology Contig-U12061-1 vs DNA
Query= Contig-U12061-1 (Contig-U12061-1Q) /CSM_Contig/Contig-U12061-1Q.Seq.d
(622 letters)
Database: ddbj_A
108,600,042 sequences; 106,710,029,556 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value N
(BJ405201) Dictyostelium discoideum cDNA clone:dds30m19, 3' ... 601 e-167 1
(BJ393321) Dictyostelium discoideum cDNA clone:dds30m19, 5' ... 90 1e-13 1
(EK409335) 1095505151949 Global-Ocean-Sampling_GS-31-01-01-1... 40 0.26 2
(AC153356) Mus musculus BAC clone RP24-477I13 from chromosom... 48 0.42 1
(AC133944) Mus musculus BAC clone RP24-113L10 from 10, compl... 48 0.42 1
(AC124874) Rattus norvegicus clone CH230-30J19, WORKING DRAF... 48 0.42 1
(AC123502) Rattus norvegicus clone CH230-280D18, WORKING DRA... 48 0.42 1
(AC115326) Rattus norvegicus clone CH230-46K12, *** SEQUENCI... 48 0.42 1
(AC110962) Rattus norvegicus clone CH230-309O21, WORKING DRA... 48 0.42 1
(AC094765) Rattus norvegicus clone CH230-5L4, WORKING DRAFT ... 48 0.42 1
(CR339055) Zebrafish DNA sequence from clone CH211-67C24 in ... 34 0.89 2
(AP009602) Solanum lycopersicum DNA, chromosome 8, clone: C0... 36 0.92 2
(BX167131) Danio rerio genomic clone DKEY-147P10, genomic su... 34 1.2 2
(DU908079) 367773 Tomato EcoRI BAC Library Solanum lycopersi... 36 1.2 2
(BX204915) Danio rerio genomic clone DKEY-223G18, genomic su... 34 1.3 2
(EU009318) Luciola species cytochrome c oxidase subunit I (C... 38 1.5 2
(U06866) Barley yellow dwarf virus TX-SGV putative readthrou... 46 1.7 1
(AC139214) Mus musculus chromosome 17, clone RP23-345D6, com... 46 1.7 1
(AC124830) Mus musculus chromosome 17, clone RP24-165B21, co... 46 1.7 1
(AC092852) Oryza sativa chromosome 3 BAC OSJNBa0032G11 genom... 46 1.7 1
(EA711741) Sequence 90620 from patent US 7365185. 46 1.7 1
(AC147400) Canis lupus familiaris clone RP81-40P8, WORKING D... 46 1.7 1
(AC101088) Mus musculus clone RP23-90J4, LOW-PASS SEQUENCE S... 46 1.7 1
(AC232008) Solanum tuberosum chromosome 1 clone RH029J20, **... 46 1.7 1
(AC196015) Zea mays chromosome 6 clone CH201-12A18; ZMMBBc00... 46 1.7 1
(AC173267) Bos taurus clone CH240-226J14, WORKING DRAFT SEQU... 46 1.7 1
(GS342029) LuSp106I05_1061063893405_TV POTATO-B-01-100-110KB... 46 1.7 1
(DE853977) Macropus eugenii DNA, BAC clone: MEB1-018C11_R, 3... 46 1.7 1
(GR410843) CF_WO1_53f07_SP6 Copepod Whole Organism, Normaliz... 46 1.7 1
(FK868028) CF_WO1_15H07_SP6 Copepod Whole Organism, Normaliz... 46 1.7 1
(ER345754) 1092344378366 Global-Ocean-Sampling_GS-34-01-01-1... 32 1.7 3
(AJ583308) Acinopus giganteus mitochondrial partial COI gene... 32 3.1 3
(CR405694) Zebrafish DNA sequence from clone DKEY-21A6 in li... 36 3.3 4
(AJ583372) Ophonus brevicollis mitochondrial partial COI gen... 32 3.6 3
(AJ583364) Ophonus ardosiacus mitochondrial partial COI gene... 32 3.6 3
(AJ583361) Ophonus stictus mitochondrial partial COI gene fo... 32 3.6 3
(AJ583333) Harpalus dispar mitochondrial partial COI gene fo... 32 3.6 3
(DQ156027) Acupalpus meridianus voucher BMNH 676904 cytochro... 32 3.6 3
(EK423861) 1095516000321 Global-Ocean-Sampling_GS-31-01-01-1... 36 4.0 2
(BB923737) Trifolium pratense cDNA clone:RCE31348. 32 4.4 2
(AF102701) Snellenius n. sp. 'Mardulyn & Whitfield' cytochro... 36 4.9 2
(AC135025) Rattus norvegicus clone CH230-464O6, WORKING DRAF... 40 5.1 4
(AL929379) Zebrafish DNA sequence from clone CH211-156H6. 36 5.7 3
(AL109662) Human chromosome 14 DNA sequence BAC R-1053O12 of... 38 5.7 3
(AM477045) Vitis vinifera, whole genome shotgun sequence, co... 42 6.2 2
(CU464085) Zebrafish DNA sequence from clone CH73-368P22 in ... 44 6.6 1
(CT573222) Zebrafish DNA sequence from clone CH211-56O1 in l... 44 6.6 1
(CR381544) Zebrafish DNA sequence from clone CH211-231H20. 44 6.6 1
(BX470231) Zebrafish DNA sequence from clone CH211-63H10 in ... 44 6.6 1
(BX322795) Zebrafish DNA sequence from clone CH211-106E12 in... 44 6.6 1
(AC122935) Mus musculus BAC clone RP23-20E4 from chromosome ... 44 6.6 1
(AC084053) Mus Musculus Strain C57BL6/J chromosome 3 BAC, RP... 44 6.6 1
(AP010263) Solanum lycopersicum DNA, chromosome 8, clone: C0... 44 6.6 1
(AP009279) Solanum lycopersicum genomic DNA, chromosome 8, c... 44 6.6 1
(AM477417) Vitis vinifera contig VV78X271661.5, whole genome... 44 6.6 1
(AM468984) Vitis vinifera contig VV78X164297.57, whole genom... 44 6.6 1
(AM435789) Vitis vinifera contig VV78X050972.8, whole genome... 44 6.6 1
(AR552381) Sequence 7512 from patent US 6747137. 44 6.6 1
(AC150032) Rhinolophus ferrumequinum clone VMRC7-372J13, com... 44 6.6 1
(AC179709) Strongylocentrotus purpuratus clone R3-1021H16, W... 44 6.6 1
(AC177297) Strongylocentrotus purpuratus clone R3-44P8, WORK... 44 6.6 1
(AC177031) Strongylocentrotus purpuratus clone R3-38B23, WOR... 44 6.6 1
(AC176305) Strongylocentrotus purpuratus clone R3-3055O23, W... 44 6.6 1
(AC171960) Bos taurus clone CH240-274D12, WORKING DRAFT SEQU... 44 6.6 1
(AC168556) Strongylocentrotus purpuratus clone R3-3091F9, WO... 44 6.6 1
(DU865101) 81477 Tomato HindIII BAC Library Solanum lycopers... 44 6.6 1
(DU865068) 81429 Tomato HindIII BAC Library Solanum lycopers... 44 6.6 1
(AL108400) Drosophila melanogaster genome survey sequence T7... 44 6.6 1
(DE913235) Macropus eugenii DNA, BAC clone: MEB1-097H08_F, 5... 44 6.6 1
(CZ944881) 310226 Tomato EcoRI BAC Library Solanum lycopersi... 44 6.6 1
(CT493755) A BAC library has been constructed from cultivar ... 44 6.6 1
(BZ011902) oeg74a08.g1 B.oleracea002 Brassica oleracea genom... 44 6.6 1
(BZ006417) oef78e09.b1 B.oleracea002 Brassica oleracea genom... 44 6.6 1
(BX228333) Danio rerio genomic clone DKEY-56E15, genomic sur... 44 6.6 1
(BH924888) odh76d01.g1 B.oleracea002 Brassica oleracea genom... 44 6.6 1
(CO437028) GDBC75 Glycyphagus domesticus cDNA library Glycyp... 44 6.6 1
(AM054015) Eudiplodinium maggii EST, clone Em07_H11. 44 6.6 1
(CB529667) UI-H-FT2-bjh-d-22-0-UI.s1 NCI_CGAP_FT2 Homo sapie... 44 6.6 1
(BB899226) Macaca fascicularis cDNA clone: Qlv-U271A-C2, 3'e... 44 6.6 1
(FE569414) CAXF2739.rev Amphioxus Branchiostoma floridae unp... 44 6.6 1
(FC324116) CAIC9472.fwd CAIC Nematostella vectensis Nemve wh... 44 6.6 1
(FC297818) CAGN9454.fwd CAGN Nematostella vectensis Nemve mi... 44 6.6 1
(FC285924) CAGN3058.fwd CAGN Nematostella vectensis Nemve mi... 44 6.6 1
(FC285923) CAGN3058.rev CAGN Nematostella vectensis Nemve mi... 44 6.6 1
(FC278931) CAGN23456.fwd CAGN Nematostella vectensis Nemve m... 44 6.6 1
(FC269748) CAGN18475.fwd CAGN Nematostella vectensis Nemve m... 44 6.6 1
(FC247823) CAGH4995.fwd CAGH Nematostella vectensis Nemve La... 44 6.6 1
(FC225303) CAGF8513.fwd CAGF Nematostella vectensis Nemve Ea... 44 6.6 1
(FC212284) CAGF1484.fwd CAGF Nematostella vectensis Nemve Ea... 44 6.6 1
(EV428593) 210781206 NVP Nasonia vitripennis cDNA clone 226K... 44 6.6 1
(CU179680) Mycoplasma agalactiae PG2 chromosome, complete se... 44 6.6 1
(CP000361) Arcobacter butzleri RM4018, complete genome. 44 6.6 1
(AL162574) Human DNA sequence from clone RP11-282A11 on chro... 40 8.1 4
(AC149290) Solanum demissum chromosome 5 clone PGEC093P17, c... 38 9.4 2
(ER507691) 1093015428627 Global-Ocean-Sampling_GS-35-01-01-1... 40 9.5 2
(CR383674) Zebrafish DNA sequence from clone DKEY-17G17 in l... 40 9.9 2
>(BJ405201) Dictyostelium discoideum cDNA clone:dds30m19, 3' end,
single read.
Length = 334
Score = 601 bits (303), Expect = e-167
Identities = 306/306 (100%)
Strand = Plus / Minus
Query: 317 caagaaaatggtagtggaagtgacgatagtcaattagaatcagagaaaattaaagttaag 376
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 caagaaaatggtagtggaagtgacgatagtcaattagaatcagagaaaattaaagttaag 248
Query: 377 ggaaaagaagcaaatttattatttagaagtaaagaaactgaaaatccaccagaattaaca 436
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 ggaaaagaagcaaatttattatttagaagtaaagaaactgaaaatccaccagaattaaca 188
Query: 437 ccaacattagtaccagagaaaccaagagacaaggacctattaaaagcaaaagataattta 496
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 187 ccaacattagtaccagagaaaccaagagacaaggacctattaaaagcaaaagataattta 128
Query: 497 ttatcaatatagtagtagcggctcctcttctgatgaatcatctgatgaaatttcttcacc 556
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 127 ttatcaatatagtagtagcggctcctcttctgatgaatcatctgatgaaatttcttcacc 68
Query: 557 aaaacctacaaaattagttgttgctgaagtaaatntaaatgatagtccaattgcatgtag 616
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67 aaaacctacaaaattagttgttgctgaagtaaatntaaatgatagtccaattgcatgtag 8
Query: 617 attggt 622
||||||
Sbjct: 7 attggt 2
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Number of Sequences: 108600042
Number of Hits to DB: 557,561,552
Number of extensions: 38335891
Number of successful extensions: 3359557
Number of sequences better than 10.0: 96
Length of query: 622
Length of database: 106,710,029,556
Length adjustment: 24
Effective length of query: 598
Effective length of database: 104,103,628,548
Effective search space: 62253969871704
Effective search space used: 62253969871704
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
Dictyostelium discoideum cDNA Project Home