Dictyostelium discoideum cDNA Contig-U12060-1

Assembled

Chromosomal Location of Contig-U12060-1

Sequence Contig-U12060-1

TTCNCTTTCT TACCNCCAGA ATATGAAGCT GGTGTTNAAG AATTTGACCA
AGGAAAAGAA AGTGATAACT TTTGGAAAAT TATTGGTGGT AATTCTAATG
ATATTGTTAT AAATACTTTT ATAAATGAAA ATAAAGAAGA AAAAGAAAAA
GAAGAAGAAG AAAAAGAAGA AGAGGAAGAA GAAGAGGAAG AAGAAGAAGA
AGAAGAAGAA GAAGAAAAAG ATAATAATAA AACAACAACA ATAATTAAAC
ATTTAAGACC AAAGAAGAAG AGGTTAAAGA GGAGGAAGTT AAAGAAGAAG
AGGTTAAGGA GGAGGTTAAA GAAGTCAAAG AGGAAGTCAA AGAAGAAGTT
AACCAAGATA AAGAAGAGGA GGTTAACGAA GAAATCAAAG AAGAAAACTA
AGGAAGAAGA AACTAAAGAA GATGATAATA AAGAGGATGA AAAAGTAAAT
GAAGAAAATG AAACAGTAAA TGAAGAAAAT GAAGTTGGTA TCATCGTATC
ACCACCATCA GAAAAAGTTG ATGAAGCCAA TAGTTCTTCA ACAATATCTT
CACCAGAGAA TGAAGGATCA GTATCGGTTA AAGACAAGAG AAAATCAAAT
GAACCTATAA CTCCAAGTGT AGTCTCATCT AGTGGTGACT TACTCTTTGC
CTATGAACCA TATCATGGCC CTCCAATTCA TTCATCAAAT AGTCCCAAAC
AAGGTAGAAA AGGTGGAAGG AAATCACATG GTAAAAATCA ACCACAACAT
AAAAAAAACC ATAGCGTTGA TCAATCTCCA TTATCTTCTC CAATCATTCC
AAACAAATCT TTAAATTTAG ATATCGATAA CCAATCATTT GATTTAAATA
GCATCAATAA CAATAACTCT GTCGAGGTTT TAGATGGCGC TTCATCACCA
CTTTCTTTCT CTTCCTCTTC AATTAATTCA AATAGTACTC ATAATACTCC
ATCAAAGAGA AATAAAAATA AGAATAAGAA AAAACATAAT AGAAGTAGTT
CACTCACTCA CGCTTAATTA TTTAATAATT TAATAATAAT AAATAATTAA
TAATTAATAA TTAATAATTA ATAATTAATA ATAATAATAA TAATAATTAA
TAATAATAAT AATAATAATA ATAATAATAA TAATAATAAT AATAATAATA
ATAATAATAA TAATAATAAT AATAATAATA ATAATAATAA TAATAATAAA
AAAAAAAAAA TTTTTTTACA TAATAATACG TAATACCTAA ATAGTAATTA
CTATCATTAA ATGTTGTAAT TTTAAATGAA AATTCAAAAT ATCTATTTAT
ATAACCAGGA AAAAAAAAAA AATAATAAAG AAATAAAAAA AATTAAAAAA
AATAA----- ---------- -----TAATT ATTTNATTAT TTNATAATNN
NANAANAAAT AANTAATAAT TAATAATTAA TNATTAATAA TTAATAATAA
TAATAATAAT AATTAATAAT AATNATAATA ATAATAATAA TAATAATAAT
AATAATAATA ATAATAATAA TTATATATCC TAATAAT

Translated Amino Acid Sequence Contig-U12060-1

fxflppeyeagvxefdqgkesdnfwkiiggnsndivintfinenkeekekeeeekeeeee
eeeeeeeeeeeekdnnktttiikhlrpkkkrlkrrklkkkrlrrrlkkskrkskkkltki
kkrrltkkskkktkeeetkeddnkedekvneenetvneenevgiivsppsekvdeansss
tisspenegsvsvkdkrksnepitpsvvsssgdllfayepyhgppihssnspkqgrkggr
kshgknqpqhkknhsvdqsplsspiipnkslnldidnqsfdlnsinnnnsvevldgassp
lsfssssinsnsthntpskrnknknkkkhnrsssltha*lfnnliiinn**liinn**li
iiiiiinnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnkkkkiflhnnt*ylnsnyyh*
ml*f*MKIQNIYLYNQEKKKNNKEIKKIKKN---

---XXXXIIXLFXNXXXNX**liinx**liiiiiiinnnxnnnnnnnnnnnnnnnyis**

Homology Contig-U12060-1 vs CSM-Contig

Sequences producing significant alignments:                        (bits)  Value


Contig-U12060-1 (Contig-U12060-1Q) /CSM_Contig/Conti...  1100  0.0
Contig-U11247-1 (Contig-U11247-1Q) /CSM_Contig/Conti...   232  9e-61
Contig-U14763-1 (Contig-U14763-1Q) /CSM_Contig/Conti...    46  1e-04
Contig-U12013-1 (Contig-U12013-1Q) /CSM_Contig/Conti...    42  0.002
Contig-U11733-1 (Contig-U11733-1Q) /CSM_Contig/Conti...    42  0.002
Contig-U14562-1 (Contig-U14562-1Q) /CSM_Contig/Conti...    40  0.007
Contig-U14263-1 (Contig-U14263-1Q) /CSM_Contig/Conti...    40  0.007
Contig-U10976-1 (Contig-U10976-1Q) /CSM_Contig/Conti...    40  0.007
Contig-U14904-1 (Contig-U14904-1Q) /CSM_Contig/Conti...    38  0.028
Contig-U14525-1 (Contig-U14525-1Q) /CSM_Contig/Conti...    38  0.028

Homology Contig-U12060-1 vs DNA

Sequences producing significant alignments:                  (bits) Value  N


(U95159) Dictyostelium discoideum gelsolin-related protein G...   527   0.0    6
(BJ440470) Dictyostelium discoideum cDNA clone:ddv43e19, 3' ...   527   0.0    2
(BJ444301) Dictyostelium discoideum cDNA clone:ddv55m23, 3' ...   527   0.0    2
(BJ379764) Dictyostelium discoideum cDNA clone:ddc35m19, 3' ...   527   0.0    2
(BJ440471) Dictyostelium discoideum cDNA clone:ddv43e20, 3' ...   527   e-174  2
(AU261398) Dictyostelium discoideum vegetative cDNA clone:VS...   381   e-103  2
(BJ409027) Dictyostelium discoideum cDNA clone:dds47c24, 3' ...   232   8e-67  2
(BJ378380) Dictyostelium discoideum cDNA clone:ddc31b21, 3' ...   232   8e-67  2
(BJ405656) Dictyostelium discoideum cDNA clone:dds32o09, 3' ...   232   8e-67  2
(BJ437364) Dictyostelium discoideum cDNA clone:ddv34d03, 3' ...   232   9e-67  2

Homology Contig-U12060-1 vs Protein

Sequences producing significant alignments:                      (bits) Value


T30330(T30330) gelsolin-related protein GRP125 - slime mold (Dic...   273   9e-72
CR628337_2769(CR628337|pid:none) Legionella pneumophila str. Len...    41   0.13
CP000828_3589(CP000828|pid:none) Acaryochloris marina MBIC11017,...    40   0.30
AB007644_3(AB007644|pid:none) Arabidopsis thaliana genomic DNA, ...    39   0.51
AK175266_1(AK175266|pid:none) Arabidopsis thaliana mRNA for pred...    39   0.51
T34513(T34513)hypothetical protein ZK783.1 - Caenorhabditis eleg...    39   0.51
AY723793_1(AY723793|pid:none) Saccharomyces cerevisiae clone FLH...    39   0.67
(P52890) RecName: Full=Transcription factor atf1; AltName: Full=...    38   0.87
AB113568_6(AB113568|pid:none) Actinoplanes sp. A40644 mevalonate...    38   0.87
AL844502_79(AL844502|pid:none) Plasmodium falciparum 3D7 chromos...    37   1.5