Homology Contig-U12060-1 vs DNA
Query= Contig-U12060-1 (Contig-U12060-1Q) /CSM_Contig/Contig-U12060-1Q.Seq.d
(1537 letters)
Database: ddbj_A
108,600,042 sequences; 106,710,029,556 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value N
(U95159) Dictyostelium discoideum gelsolin-related protein G... 527 0.0 6
(BJ440470) Dictyostelium discoideum cDNA clone:ddv43e19, 3' ... 527 0.0 2
(BJ444301) Dictyostelium discoideum cDNA clone:ddv55m23, 3' ... 527 0.0 2
(BJ379764) Dictyostelium discoideum cDNA clone:ddc35m19, 3' ... 527 0.0 2
(BJ440471) Dictyostelium discoideum cDNA clone:ddv43e20, 3' ... 527 e-174 2
(AU261398) Dictyostelium discoideum vegetative cDNA clone:VS... 381 e-103 2
(BJ409027) Dictyostelium discoideum cDNA clone:dds47c24, 3' ... 232 8e-67 2
(BJ378380) Dictyostelium discoideum cDNA clone:ddc31b21, 3' ... 232 8e-67 2
(BJ405656) Dictyostelium discoideum cDNA clone:dds32o09, 3' ... 232 8e-67 2
(BJ437364) Dictyostelium discoideum cDNA clone:ddv34d03, 3' ... 232 9e-67 2
(BJ434965) Dictyostelium discoideum cDNA clone:ddv25i15, 3' ... 232 1e-66 2
(AU039180) Dictyostelium discoideum slug cDNA, clone SSM486. 182 2e-44 2
(BJ349549) Dictyostelium discoideum cDNA clone:dda36h23, 3' ... 149 1e-41 2
(AC174998) Echinops telfairi clone CH238-7O9, WORKING DRAFT ... 52 0.068 1
(AC174833) Echinops telfairi clone CH238-147B20, WORKING DRA... 52 0.068 1
(AC119554) Rattus norvegicus clone CH230-36M10, *** SEQUENCI... 50 0.27 1
(AC106476) Rattus norvegicus clone CH230-162P24, WORKING DRA... 50 0.27 1
(BH249673) BOGAN34TR BOGA Brassica oleracea genomic clone BO... 50 0.27 1
(GD089199) KS19020E12 KS19 Capsicum annuum cDNA, mRNA sequence. 50 0.27 1
(GD083888) KS18026C08 KS18 Capsicum annuum cDNA, mRNA sequence. 50 0.27 1
(CU467709) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 46 0.96 3
(CU929450) Zebrafish DNA sequence from clone CH73-14I5 in li... 48 1.1 1
(CU928046) Zebrafish DNA sequence from clone CH73-302A4 in l... 48 1.1 1
(CT573220) Zebrafish DNA sequence from clone CH211-194O20 in... 48 1.1 1
(CT025897) Zebrafish DNA sequence from clone DKEY-70E17 in l... 48 1.1 1
(AC115474) Rattus norvegicus clone CH230-170D2, *** SEQUENCI... 48 1.1 1
(AC110402) Rattus norvegicus clone CH230-44K24, *** SEQUENCI... 48 1.1 1
(AC094819) Rattus norvegicus clone CH230-5J12, WORKING DRAFT... 48 1.1 1
(FP236322) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 48 1.1 1
(AC221473) Bos taurus clone CH240-410C6, WORKING DRAFT SEQUE... 48 1.1 1
(AC221276) Bos taurus clone CH240-401P20, WORKING DRAFT SEQU... 48 1.1 1
(AC198370) Zea mays chromosome 5 clone CH201-251N15; ZMMBBc0... 48 1.1 1
(AC192560) Zea mays chromosome 5 clone CH201-434C14; ZMMBBc0... 48 1.1 1
(AC186312) Zea mays chromosome 5 clone CH201-282D19; ZMMBBc0... 48 1.1 1
(EJ453046) 1093015455493 Global-Ocean-Sampling_GS-28-01-01-1... 48 1.1 1
(CG309418) OG2BU55TV ZM_0.7_1.5_KB Zea mays genomic clone ZM... 48 1.1 1
(EH701328) CCIS13428.b1_H22.ab1 CCI(LMS) chicory Cichorium i... 48 1.1 1
(CR543861) Acinetobacter sp. ADP1 complete genome. 48 1.1 1
(AC147421) Didelphis virginiana clone LB3-274H11, WORKING DR... 44 1.5 4
(AC185743) Bos taurus clone RP42-293A14, WORKING DRAFT SEQUE... 46 1.8 3
(AC218407) Bos taurus clone CH240-283K16, WORKING DRAFT SEQU... 46 3.1 3
(AL596446) Mouse DNA sequence from clone RP23-386E10 on chro... 46 4.2 1
(AC188550) Pan troglodytes BAC clone CH251-284F12 from chrom... 46 4.2 1
(AC147320) Pan troglodytes BAC clone RP43-44E12 from chromos... 46 4.2 1
(AC146265) Pan troglodytes BAC clone RP43-28O21 from chromos... 46 4.2 1
(AL356415) Human DNA sequence from clone RP3-337D23 on chrom... 46 4.2 1
(AC062031) Homo sapiens BAC clone RP11-474G7 from 2, complet... 46 4.2 1
(AC010908) Homo sapiens BAC clone CTD-3073A19 from 7, comple... 46 4.2 1
(AC161396) Bos taurus clone CH240-69P7, WORKING DRAFT SEQUEN... 46 4.2 1
(AC147856) Atelerix albiventris clone LB4-158N8, WORKING DRA... 46 4.2 1
(AC141385) Rattus norvegicus clone CH230-242D2, WORKING DRAF... 46 4.2 1
(AC112074) Rattus norvegicus clone CH230-203L24, *** SEQUENC... 46 4.2 1
(AC073500) Homo sapiens chromosome 7 clone RP11-608A8, WORKI... 46 4.2 1
(AC068575) Homo sapiens chromosome 2 clone RP11-337J16 map 2... 46 4.2 1
(AC218283) Bos taurus clone CH240-288M4, WORKING DRAFT SEQUE... 46 4.2 1
(AC218206) Bos taurus clone CH240-291E9, WORKING DRAFT SEQUE... 46 4.2 1
(AC216735) Zea mays chromosome 5 clone CH201-11B15; ZMMBBc00... 46 4.2 1
(AC215294) Zea mays chromosome 5 clone CH201-540G14; ZMMBBc0... 46 4.2 1
(AC214771) Zea mays chromosome 5 clone CH201-197H3; ZMMBBc01... 46 4.2 1
(AC213637) Zea mays chromosome 4 clone CH201-27P9; ZMMBBc002... 46 4.2 1
(AC211666) Zea mays chromosome 5 clone CH201-478C19; ZMMBBc0... 46 4.2 1
(AC204427) Zea mays chromosome 5 clone CH201-18L1; ZMMBBc001... 46 4.2 1
(AC193342) Zea mays chromosome 2 clone ZMMBBb-266B4; ZMMBBb0... 46 4.2 1
(AC191391) Zea mays chromosome 5 clone CH201-275D8; ZMMBBc02... 46 4.2 1
(AC163414) Bos taurus clone CH240-260H13, WORKING DRAFT SEQU... 46 4.2 1
(AC025698) Homo sapiens chromosome 6 clone RP11-105L9, WORKI... 46 4.2 1
(AC013720) Homo sapiens chromosome 6 clone RP11-281L5, WORKI... 46 4.2 1
(GS020528) gr138G07.f gr Gossypium raimondii genomic clone g... 46 4.2 1
(ER925553) MUGQ_CH252P285F02T7_CP419_011 CHORI-252 Vervet Mo... 46 4.2 1
(AQ334226) HS_5005_A2_A08_T7 RPCI11 Human Male BAC Library H... 46 4.2 1
(EF744270) Mus musculus C57BL/6N IST10372A11HMF2 gene trap e... 46 4.2 1
(EF717262) Mus musculus C57BL/6N IST10088F4BBF1 gene trap em... 46 4.2 1
(DU479114) 1098415817242 CHORI-243 Ovis aries genomic clone ... 46 4.2 1
(CZ371967) ZMMBF0128C15r ZMMBF Zea mays genomic clone ZMMBF0... 46 4.2 1
(CG827237) ZMMBBb0310B15.r ZMMBBb Zea mays subsp. mays genom... 46 4.2 1
(CC752695) ZMMBBb0134E23.f ZMMBBb Zea mays subsp. mays genom... 46 4.2 1
(AU271006) Dictyostelium discoideum vegetative cDNA clone:VS... 46 4.2 1
(AU268554) Dictyostelium discoideum vegetative cDNA clone:VS... 46 4.2 1
(AU263113) Dictyostelium discoideum vegetative cDNA clone:VS... 46 4.2 1
(CV313181) CM1-CI0004-080101-588-g06 CI0004 Homo sapiens cDN... 46 4.2 1
(CK418612) AUF_IpOva_18_k21 Ovary cDNA library Ictalurus pun... 46 4.2 1
(AJ700617) Zantedeschia aethiopica EST, clone F-5-13. 46 4.2 1
(BJ418727) Dictyostelium discoideum cDNA clone:ddv33d23, 5' ... 46 4.2 1
(AC145288) Didelphis virginiana clone LB3-168C18, WORKING DR... 44 5.2 3
(AC128850) Rattus norvegicus clone CH230-446K22, *** SEQUENC... 44 7.3 3
(AC174311) Medicago truncatula clone mth2-145p15, complete s... 38 7.8 6
(AC181874) Strongylocentrotus purpuratus clone R3-1019H16, W... 34 9.5 6
(AM438840) Vitis vinifera contig VV78X121629.4, whole genome... 40 9.8 3
>(U95159) Dictyostelium discoideum gelsolin-related protein GRP125
gene, complete cds.
Length = 4112
Score = 527 bits (266), Expect(6) = 0.0
Identities = 266/266 (100%)
Strand = Plus / Plus
Query: 485 ttggtatcatcgtatcaccaccatcagaaaaagttgatgaagccaatagttcttcaacaa 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3180 ttggtatcatcgtatcaccaccatcagaaaaagttgatgaagccaatagttcttcaacaa 3239
Query: 545 tatcttcaccagagaatgaaggatcagtatcggttaaagacaagagaaaatcaaatgaac 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3240 tatcttcaccagagaatgaaggatcagtatcggttaaagacaagagaaaatcaaatgaac 3299
Query: 605 ctataactccaagtgtagtctcatctagtggtgacttactctttgcctatgaaccatatc 664
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3300 ctataactccaagtgtagtctcatctagtggtgacttactctttgcctatgaaccatatc 3359
Query: 665 atggccctccaattcattcatcaaatagtcccaaacaaggtagaaaaggtggaaggaaat 724
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3360 atggccctccaattcattcatcaaatagtcccaaacaaggtagaaaaggtggaaggaaat 3419
Query: 725 cacatggtaaaaatcaaccacaacat 750
||||||||||||||||||||||||||
Sbjct: 3420 cacatggtaaaaatcaaccacaacat 3445
Score = 387 bits (195), Expect(6) = 0.0
Identities = 195/195 (100%)
Strand = Plus / Plus
Query: 759 ccatagcgttgatcaatctccattatcttctccaatcattccaaacaaatctttaaattt 818
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3454 ccatagcgttgatcaatctccattatcttctccaatcattccaaacaaatctttaaattt 3513
Query: 819 agatatcgataaccaatcatttgatttaaatagcatcaataacaataactctgtcgaggt 878
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3514 agatatcgataaccaatcatttgatttaaatagcatcaataacaataactctgtcgaggt 3573
Query: 879 tttagatggcgcttcatcaccactttctttctcttcctcttcaattaattcaaatagtac 938
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3574 tttagatggcgcttcatcaccactttctttctcttcctcttcaattaattcaaatagtac 3633
Query: 939 tcataatactccatc 953
|||||||||||||||
Sbjct: 3634 tcataatactccatc 3648
Score = 232 bits (117), Expect(6) = 0.0
Identities = 123/126 (97%)
Strand = Plus / Plus
Query: 1 ttcnctttcttaccnccagaatatgaagctggtgttnaagaatttgaccaaggaaaagaa 60
||| |||||||||| ||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 1988 ttcactttcttaccaccagaatatgaagctggtgttaaagaatttgaccaaggaaaagaa 2047
Query: 61 agtgataacttttggaaaattattggtggtaattctaatgatattgttataaatactttt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2048 agtgataacttttggaaaattattggtggtaattctaatgatattgttataaatactttt 2107
Query: 121 ataaat 126
||||||
Sbjct: 2108 ataaat 2113
Score = 174 bits (88), Expect(6) = 0.0
Identities = 91/92 (98%)
Strand = Plus / Plus
Query: 1218 acataataatacgtaatacctaaatagtaattactatcattaaatgttgtaattttaaat 1277
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 3918 acataataatacgtaatacctaaatagtgattactatcattaaatgttgtaattttaaat 3977
Query: 1278 gaaaattcaaaatatctatttatataaccagg 1309
||||||||||||||||||||||||||||||||
Sbjct: 3978 gaaaattcaaaatatctatttatataaccagg 4009
Score = 61.9 bits (31), Expect(6) = 0.0
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 222 taataataaaacaacaacaataattaaacat 252
|||||||||||||||||||||||||||||||
Sbjct: 2209 taataataaaacaacaacaataattaaacat 2239
Score = 36.2 bits (18), Expect(6) = 0.0
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 996 tagttcactcactcacgc 1013
||||||||||||||||||
Sbjct: 3691 tagttcactcactcacgc 3708
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Number of Sequences: 108600042
Number of Hits to DB: 1,009,782,044
Number of extensions: 67771519
Number of successful extensions: 6242416
Number of sequences better than 10.0: 88
Length of query: 1537
Length of database: 106,710,029,556
Length adjustment: 24
Effective length of query: 1513
Effective length of database: 104,103,628,548
Effective search space: 157508789993124
Effective search space used: 157508789993124
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
Dictyostelium discoideum cDNA Project Home