Dictyostelium discoideum cDNA Contig-U12057-1

Assembled

Chromosomal Location of Contig-U12057-1

Sequence Contig-U12057-1

TCAAAATGTT ATATCAGTTA TTAACCATTT ATTAGATTCA AAAGATAATA
GTGAAAGAGA ATATTATATT ATTAATAATG AAATTAATAT TGAAAGATAT
AAAAATGAAT CAAATATTAA ACATCAATTA AAATCAAAAA CCTTTCAAGA
AAATAAAGAT GAATTAATGG TACAATTAGA CTCAAATTTA GAATATAGAT
TAAAATCAAA ATCAAAACAA GAATTAAAAT CAACTCATGT TGAAATTCAA
GTTAAAGCAA TTGGAATTAA TTATAAAGAT TATGCAACTT ACAGTGGTTT
AATCGATTCA ATCATAGAAA TTGATAAAGA TAAAGAAAAG GATGAAAATT
ATGACCAAAA TTATCCAAGT ATTGGTAATG ATTTTAGTGG TGTAATTACA
AGAATTGGTA GTGATGTTAG AAAGTTTAAA GTTGGTGATG AAGTATGTGG
TTTAGCACCT AAAACATCCG CTTCACATAT TATCACTGAA GAAGGTTATC
TTTGTAAGAA ACCATCAAAC ATTAGTCACT CTGAAGCTGC ATCATCAGTA
ACAGTTTACA CAACATCATT TCAAAGTATT TGTAGCATTG GTGATTTAAA
GAAAAATGAA ACCATATTAA TTCATT---- ---------- ------NNNN
NNNNNTTCTA TTATCAATTT AATTACACCA CCAATCATTA ATTTCTTCAT
TGGATTTATT TATTCAAAAC TCTCCAAACC TTTTCAAACT ATACTCATTT
CAATTTCATA TATGATAATA TAGAATCATA TTCACTCAAC AGAATGTTAT
TTAAATTTGA CTATTTAATC AACCAACATT CCTCATTAGT TTCAAATAAA
AGATTAGGTG GAATAAATGA AAATAATAAT ATTGGTGATT TATTAGTATC
AAAAATTGGT GAACTTTTAT CAATTGAGCC ATCAAAATTG AATTTAGATT
TTAGATTAGT TGATTATGGT TTAGATTCAT TGGTTATCGT TCAACTTAAA
AATTTTATTG ATAAACAATT CCAACCTCAT TTAATTTCAA TTTTACAATT
ACAAAATAAT AAAATCTCAA CAACAATAGA AATTATAATC AAAGGATATA
ATAATAATCA AAATAAAAAA ATTAAAAATG AACAATCAAA TGACATTCCA
AGTGTAGTTC AAAAAGAAAC TATCAAAGAT AACAATGAAA ATAAAGACGA
TATAAAAATC GATATGGATG ATAAAAAAGA AAATTTAAAA GGTAAAAAAG
AGAATATTGA TGACAAAAAA GAAAATAACA ATTAGCCATA ATTTCAAAAT
CGTTAGTTTT ATAAAGTTTT TGTATTCAAA ACAATAATTA AAAAATAAAG
NNNATAATAA TTTTACAAAA A

Translated Amino Acid Sequence Contig-U12057-1

QNVISVINHLLDSKDNSEREYYIINNEINIERYKNESNIKHQLKSKTFQENKDELMVQLD
SNLEYRLKSKSKQELKSTHVEIQVKAIGINYKDYATYSGLIDSIIEIDKDKEKDENYDQN
YPSIGNDFSGVITRIGSDVRKFKVGDEVCGLAPKTSASHIITEEGYLCKKPSNISHSEAA
SSVTVYTTSFQSICSIGDLKKNETILIHXXX---

---XXXSIINLITPPIINFFIGFIYSKLSKPFQTILISISYMII*nhihstecylnlti*
stniph*fqikd*ve*mkiiilviy*yqklvnfyqlshqn*i*ild*limv*ihwlsfnl
killinnsnli*fqfynykiiksqqq*kl*skdiiiikikklkmnnqmtfqv*fkkklsk
itmkikti*ksiwmikkki*kvkkrilmtkkkitishnfkivsfikflyskq*lknkxxn
nftk

Homology Contig-U12057-1 vs CSM-Contig

Sequences producing significant alignments:                        (bits)  Value


Contig-U12057-1 (Contig-U12057-1Q) /CSM_Contig/Conti...   930  0.0
Contig-U13343-1 (Contig-U13343-1Q) /CSM_Contig/Conti...    40  0.006
Contig-U11244-1 (Contig-U11244-1Q) /CSM_Contig/Conti...    40  0.006
Contig-U10142-1 (Contig-U10142-1Q) /CSM_Contig/Conti...    40  0.006
Contig-U05002-1 (Contig-U05002-1Q) /CSM_Contig/Conti...    40  0.006
Contig-U13725-1 (Contig-U13725-1Q) /CSM_Contig/Conti...    38  0.025
Contig-U12537-1 (Contig-U12537-1Q) /CSM_Contig/Conti...    38  0.025
Contig-U12414-1 (Contig-U12414-1Q) /CSM_Contig/Conti...    38  0.025
Contig-U12073-1 (Contig-U12073-1Q) /CSM_Contig/Conti...    38  0.025
Contig-U11740-1 (Contig-U11740-1Q) /CSM_Contig/Conti...    38  0.025

Homology Contig-U12057-1 vs DNA

Sequences producing significant alignments:                  (bits) Value  N


(BJ392939) Dictyostelium discoideum cDNA clone:dds29c14, 5' ...   930   0.0    2
(BJ404748) Dictyostelium discoideum cDNA clone:dds29c14, 3' ...   771   0.0    3
(CP000942) Ureaplasma parvum serovar 3 str. ATCC 27815, comp...    34   5e-05  20
(AF222894) Ureaplasma parvum serovar 3 str. ATCC 700970, com...    34   5e-05  20
(AF402141) Schizophyllum commune mitochondrial DNA, complete...    34   0.002  8
(CP000123) Mycoplasma capricolum subsp. capricolum ATCC 2734...    34   0.004  22
(AC189214) Brassica rapa subsp. pekinensis clone KBrB009D14,...    44   0.007  5
(CP001357) Brachyspira hyodysenteriae WA1, complete genome.        38   0.011  18
(DY307863) Cm_mx1_64c03_SP6 Green Shore Crab Multiple Tissue...    54   0.015  1
(DY307300) Cm_mx1_58a09_SP6 Green Shore Crab Multiple Tissue...    54   0.015  1

Homology Contig-U12057-1 vs Protein

Sequences producing significant alignments:                      (bits) Value


(Q54FN7) RecName: Full=Probable polyketide synthase 33;         ...   182   3e-44
(Q54FQ3) RecName: Full=Probable polyketide synthase 29;         ...   181   4e-44
(Q54FC8) RecName: Full=Probable polyketide synthase 39;         ...   180   1e-43
(Q54FD2) RecName: Full=Probable polyketide synthase 38;         ...   180   1e-43
(Q54ED6) RecName: Full=Probable polyketide synthase 41;         ...   149   2e-34
AC117075_22(AC117075|pid:none) Dictyostelium discoideum chromoso...   142   2e-32
(Q54KU3) RecName: Full=Probable polyketide synthase 25;         ...   139   2e-31
AC116982_20(AC116982|pid:none) Dictyostelium discoideum chromoso...   131   5e-29
(Q54TW0) RecName: Full=Probable polyketide synthase 18;         ...   129   3e-28
AC116982_23(AC116982|pid:none) Dictyostelium discoideum chromoso...   129   3e-28