Homology Contig-U11979-1 vs DNA
Query= Contig-U11979-1 (Contig-U11979-1Q) /CSM_Contig/Contig-U11979-1Q.Seq.d
(1655 letters)
Database: ddbj_A
108,600,042 sequences; 106,710,029,556 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value N
(U49332) Dictyostelium discoideum 150-kD protein (cluA) mRNA... 1871 0.0 3
(BJ399966) Dictyostelium discoideum cDNA clone:dds8p06, 3' e... 1532 0.0 1
(BJ421686) Dictyostelium discoideum cDNA clone:ddv43c13, 5' ... 1179 0.0 1
(BJ419265) Dictyostelium discoideum cDNA clone:ddv35f15, 5' ... 842 0.0 1
(BJ427590) Dictyostelium discoideum cDNA clone:ddv62m20, 5' ... 414 0.0 2
(BJ388167) Dictyostelium discoideum cDNA clone:dds8p06, 5' e... 62 8e-05 1
(CT797314) Pan troglodytes chromosome X clone CH251-171B18 m... 42 0.69 3
(EI252157) ZMMBBc0294F04.fv ZMMBB_VAL Zea mays genomic clone... 48 1.1 1
(EX286153) 1573995_5_O09_033 PY06 Carica papaya cDNA, mRNA s... 48 1.1 1
(EX279232) 1566108_5_F18_075 PY06 Carica papaya cDNA, mRNA s... 48 1.1 1
(EX264973) 1445431_5_F13_059 PY06 Carica papaya cDNA, mRNA s... 48 1.1 1
(EX254830) PY05078X1H12.f1 PY05 Carica papaya cDNA, mRNA seq... 48 1.1 1
(AC116475) Mus musculus chromosome 8, clone RP23-386N2, comp... 46 4.5 1
(CX108412) BI148P14 A normalized whole-life-cycle cDNA libra... 46 4.5 1
(CT850617) Oryza sativa Indica Group EST sequence:OSIGCRN110... 46 4.5 1
(BG622657) 602647413F1 NIH_MGC_79 Homo sapiens cDNA clone IM... 46 4.5 1
(AC099195) Rattus norvegicus clone CH230-187H23, *** SEQUENC... 32 8.2 2
(AC216432) Oryza punctata clone OP__Ba0058M17, *** SEQUENCIN... 40 9.2 3
>(U49332) Dictyostelium discoideum 150-kD protein (cluA) mRNA,
complete cds.
Length = 4232
Score = 1871 bits (944), Expect(3) = 0.0
Identities = 944/944 (100%)
Strand = Plus / Plus
Query: 658 ttaacaccacaacaaaaagagagaaaacaaaagatgacagagattaaaggtattgataaa 717
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 914 ttaacaccacaacaaaaagagagaaaacaaaagatgacagagattaaaggtattgataaa 973
Query: 718 ccaatgttaagtagttattatccagagagtccaattgcaccagttcaatgtgttaaatca 777
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 974 ccaatgttaagtagttattatccagagagtccaattgcaccagttcaatgtgttaaatca 1033
Query: 778 atgatttacagtggttggtcaccagtaccaggatatagaaaattgtttggtgatttattc 837
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1034 atgatttacagtggttggtcaccagtaccaggatatagaaaattgtttggtgatttattc 1093
Query: 838 tatttggatatcacattattagagggtacaaccatttgtgttacagcatcaactcaaggt 897
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1094 tatttggatatcacattattagagggtacaaccatttgtgttacagcatcaactcaaggt 1153
Query: 898 tttttcattaatcaatcaagcaatgcaacattcaatccatcagtttcaccaaaggcaacc 957
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1154 tttttcattaatcaatcaagcaatgcaacattcaatccatcagtttcaccaaaggcaacc 1213
Query: 958 atcaatcatagtttacatcaattattgacccaagtttcaagattattccgtcgtggttta 1017
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1214 atcaatcatagtttacatcaattattgacccaagtttcaagattattccgtcgtggttta 1273
Query: 1018 aatcaaatccttacaaacattggtcgtaatcatccattcgatatgcttccaggcgtatta 1077
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1274 aatcaaatccttacaaacattggtcgtaatcatccattcgatatgcttccaggcgtatta 1333
Query: 1078 ccagtacacaattgggttgcctcatcaaagaccaatcgttacgatatcaataaaggtacc 1137
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1334 ccagtacacaattgggttgcctcatcaaagaccaatcgttacgatatcaataaaggtacc 1393
Query: 1138 gatacttttgttagcgtacaagacgttgagttgcgtggcaatcctcgtgattggaacgaa 1197
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1394 gatacttttgttagcgtacaagacgttgagttgcgtggcaatcctcgtgattggaacgaa 1453
Query: 1198 gagatccaagcaccaaaggagttaccaaaatcaaccgttcaagaacgtatcattagagat 1257
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1454 gagatccaagcaccaaaggagttaccaaaatcaaccgttcaagaacgtatcattagagat 1513
Query: 1258 cgtgctatcagtaaggtaaattctgaatttgttgaatgcgcaattcgtggtgctcaagtc 1317
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1514 cgtgctatcagtaaggtaaattctgaatttgttgaatgcgcaattcgtggtgctcaagtc 1573
Query: 1318 attgtcgataaagcaattcttccaattaatccagctgaaaatcaaagaagtcatatgttc 1377
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1574 attgtcgataaagcaattcttccaattaatccagctgaaaatcaaagaagtcatatgttc 1633
Query: 1378 ctctacaataatatcttcttttcctatgcattggacactcgtgattctttcaccgattgt 1437
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1634 ctctacaataatatcttcttttcctatgcattggacactcgtgattctttcaccgattgt 1693
Query: 1438 ggtggtgatgatgctgctcgtacatctgcaaacaatgatctcaaaggtattcgtttatat 1497
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1694 ggtggtgatgatgctgctcgtacatctgcaaacaatgatctcaaaggtattcgtttatat 1753
Query: 1498 aatttagccgatattgatggtctttacactttaggtactgccatcgtagattataaaggc 1557
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1754 aatttagccgatattgatggtctttacactttaggtactgccatcgtagattataaaggc 1813
Query: 1558 caaagaatcattgctcaatctttaattcctggtattttaacaac 1601
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1814 caaagaatcattgctcaatctttaattcctggtattttaacaac 1857
Score = 44.1 bits (22), Expect(3) = 0.0
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1603 aaaaaacttcaaaaatttatta 1624
||||||||||||||||||||||
Sbjct: 1860 aaaaaacttcaaaaatttatta 1881
Score = 32.2 bits (16), Expect(3) = 0.0
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 1632 ggatacaccaacaaat 1647
||||||||||||||||
Sbjct: 1891 ggatacaccaacaaat 1906
Score = 359 bits (181), Expect = 2e-94
Identities = 181/181 (100%)
Strand = Plus / Plus
Query: 263 aacttagttctattgaaggtcttgttgaaggcgctaccttggaaatggtaccagtcgatt 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 aacttagttctattgaaggtcttgttgaaggcgctaccttggaaatggtaccagtcgatt 581
Query: 323 acaatgagagatcagcaaaattacacgttaaaagattaagagatattatgaatacaggtt 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582 acaatgagagatcagcaaaattacacgttaaaagattaagagatattatgaatacaggtt 641
Query: 383 taacagaatttgccaatatgaataatccaagtcttttcacaagtttttcattcccagaga 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 642 taacagaatttgccaatatgaataatccaagtcttttcacaagtttttcattcccagaga 701
Query: 443 a 443
|
Sbjct: 702 a 702
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Number of Sequences: 108600042
Number of Hits to DB: 1,442,700,410
Number of extensions: 80325520
Number of successful extensions: 6310017
Number of sequences better than 10.0: 19
Length of query: 1655
Length of database: 106,710,029,556
Length adjustment: 24
Effective length of query: 1631
Effective length of database: 104,103,628,548
Effective search space: 169793018161788
Effective search space used: 169793018161788
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
Dictyostelium discoideum cDNA Project Home