Dictyostelium discoideum cDNA Contig-U11942-1

Assembled

Chromosomal Location of Contig-U11942-1

NO HIT FOUND.

Sequence Contig-U11942-1

AATATTATAA AAATGGTTTT AACATTGAAA GAATTAATTA ATAATATTTG
TCAAACTAAA GATATAAAAT TAATAATTGA ACAATTAAGG GAATTAAAAC
AATCATTTTT AAATTATAAT AATAGCGAAA ATAATGATAA TGATAATCAA
GTAACAATAA CATCAATTTT AAAATTATTA ATTGAAAATG TTTTAGATAA
TTGGTATTAT GCATTCACAG AATTTGATAA ACAATTATTT GAAAGTTTTT
TCTTTTTACC AAATTTATTA TCAGAATCAT TTATAACATT AACAACATTA
TTATCAGAAT ATAATTATAA TAATAGTAAT AGTAATAATA ATAATAGTAA
AAATAATGAA GAATTATATT CACAAAAATT AAACTTTTTA TTTAATATTT
TATATAAATT TATAAATGAT AATAATAGTA ATAATTTATC AAAGTTAATA
ATTGAATTTC AAAATAGAAA ATTTAAAAAA CATAATAATA ATATTGATTT
AGAAATTCAT GAAACAATTT GGAATTTAAT AATAAAATCA ATTTGTTTGA
TACCAGATAA ATGTAGATCA ATTCAATATT ATTATAAAAA TAATAGAATT
AGGAATATTC AATCACCATT ATCATCAGTT AAAGATTATA TTTTAGAATT
CTTTACCAAT AATAATTTAT TTTATTCC-- ---------- --------NN
NNNNNNNAAT CTGCTAAAGA ATTATCAGCT TTAAATTATC AACAAAATAC
TCAAAGACAA CAACAACAAG AACAACAACA ACAACAGTAT GAAGAGTCTA
AAAATAGTAT ATTTAATATT AATGGTGGTG GTGGTAGTGG TGAAAGTAGT
AAATTACCAA TTTTAAAACA AATTGGTATT GTTAGAAAAT GGGGACAAAG
AAAGACACCT AGACCAATAA TAAAATCAAA TAGATTCCAT AAATTTGTAA
AAATTTATTT TTATCCATTA TTAAGTGGAT TTGATAAAGT TACTCAATGT
TATGAAGGTG GTGCTAGTGG TGGTGAGATG ATGATGGGAT ATGATAGTTT
TTTATTAAGT AGATTAATTC ATACATTGGG TGTTATTGTT GAATGTGCAG
GTAATTCAAA TGATACTAGA ATGATATCAA AAGAGTTGGT TAGATTTTTG
TGGTCATTTA AATCACATAG AGATTCAAAT GTGAGAAGGT CATTACTTTA
TTCACTATCA AGAGTATTCT ATAGAGAGAC AATTACAAAG TCAGTTATTG
ATCAAGACTA CACTGATGAA ATTGAAGATA TTGCTCAATT TTTATTNAAG
TATCTCAATC CGATTCTGAT AAAGACTCAA GAGTTATGGC AATTGCAACA

Translated Amino Acid Sequence Contig-U11942-1

NIIKMVLTLKELINNICQTKDIKLIIEQLRELKQSFLNYNNSENNDNDNQVTITSILKLL
IENVLDNWYYAFTEFDKQLFESFFFLPNLLSESFITLTTLLSEYNYNNSNSNNNNSKNNE
ELYSQKLNFLFNILYKFINDNNSNNLSKLIIEFQNRKFKKHNNNIDLEIHETIWNLIIKS
ICLIPDKCRSIQYYYKNNRIRNIQSPLSSVKDYILEFFTNNNLFYSXXX---

---XXXXSAKELSALNYQQNTQRQQQQEQQQQQYEESKNSIFNINGGGGSGESSKLPILK
QIGIVRKWGQRKTPRPIIKSNRFHKFVKIYFYPLLSGFDKVTQCYEGGASGGEMMMGYDS
FLLSRLIHTLGVIVECAGNSNDTRMISKELVRFLWSFKSHRDSNVRRSLLYSLSRVFYRE
TITKSVIDQDYTDEIEDIAQFLXKYLNPILIKTQELWQLQ

Homology Contig-U11942-1 vs CSM-Contig

Sequences producing significant alignments:                        (bits)  Value


Contig-U11942-1 (Contig-U11942-1Q) /CSM_Contig/Conti...  1112  0.0
Contig-U12561-1 (Contig-U12561-1Q) /CSM_Contig/Conti...    46  1e-04
Contig-U11105-1 (Contig-U11105-1Q) /CSM_Contig/Conti...    44  4e-04
Contig-U13949-1 (Contig-U13949-1Q) /CSM_Contig/Conti...    42  0.002
Contig-U13938-1 (Contig-U13938-1Q) /CSM_Contig/Conti...    42  0.002
Contig-U13348-1 (Contig-U13348-1Q) /CSM_Contig/Conti...    42  0.002
Contig-U12084-1 (Contig-U12084-1Q) /CSM_Contig/Conti...    42  0.002
Contig-U11424-1 (Contig-U11424-1Q) /CSM_Contig/Conti...    42  0.002
Contig-U12784-1 (Contig-U12784-1Q) /CSM_Contig/Conti...    40  0.006
Contig-U14682-1 (Contig-U14682-1Q) /CSM_Contig/Conti...    38  0.024

Homology Contig-U11942-1 vs DNA

Sequences producing significant alignments:                  (bits) Value  N


(BJ385883) Dictyostelium discoideum cDNA clone:ddc56p08, 3' ...  1112   0.0    2
(BJ371051) Dictyostelium discoideum cDNA clone:ddc56p08, 5' ...   339   0.0    4
(AE014188) Plasmodium falciparum 3D7 chromosome 12, complete...    40   2e-07  16
(AE014187) Plasmodium falciparum 3D7 chromosome 14, complete...    38   1e-05  16
(AL844508) Plasmodium falciparum 3D7 chromosome 9.                 40   3e-05  15
(AF250284) Amsacta moorei entomopoxvirus, complete genome.         34   5e-05  17
(CP000721) Clostridium beijerinckii NCIMB 8052, complete gen...    40   5e-05  17
(EU401918) Bombus hypocrita sapporoensis mitochondrion, part...    34   6e-05  9
(AL844505) Plasmodium falciparum 3D7 chromosome 6.                 38   9e-05  17
(AC005139) Plasmodium falciparum chromosome 12, *** SEQUENCI...    40   1e-04  14

Homology Contig-U11942-1 vs Protein

Sequences producing significant alignments:                      (bits) Value


BC135213_1(BC135213|pid:none) Xenopus tropicalis CG31285-PA, mRN...    61   1e-07
(Q08CY4) RecName: Full=Telomere length regulation protein TEL2 h...    61   1e-07
(Q6GPP1) RecName: Full=Telomere length regulation protein TEL2 h...    59   5e-07
BC073072_1(BC073072|pid:none) Xenopus laevis Telomere length reg...    59   5e-07
BC125895_1(BC125895|pid:none) Danio rerio zgc:153824, mRNA (cDNA...    55   4e-06
AK001786_1(AK001786|pid:none) Homo sapiens cDNA FLJ10924 fis, cl...    55   8e-06
AB384510_1(AB384510|pid:none) Synthetic construct DNA, clone: pF...    55   8e-06
(Q9Y4R8) RecName: Full=Telomere length regulation protein TEL2 h...    55   8e-06
AB014583_1(AB014583|pid:none) Homo sapiens mRNA for KIAA0683 pro...    55   8e-06
AL772148_2(AL772148|pid:none) Zebrafish DNA sequence from clone ...    54   1e-05