Dictyostelium discoideum cDNA Contig-U11921-1

Assembled

Chromosomal Location of Contig-U11921-1

Sequence Contig-U11921-1

GGAATATCAT TGACAAAATA ACCATTTGGA GCAACCAACA AATTTCATTC
AAGAAAAATA ATTATCTATA AATATCTTAA AATCGCCTTA TCTTTTTCCT
AATTTTTTTT AATATTTTAT AATTTTTTTC ATTTTTAAAA AAATACCCTT
ATATATATAT ATTTATATTT TTTTTTAAAT ATTTTAATAA TAATATTAAC
ACCTCCCATC CCAAGAAAAT AAATTAATTT AAACAATTTT TTTAAAATAC
ATACACATTT AAATTTTTTT TTTTTTTTTT TTCCCAAAAA AAA-------
---AAAAAAA AAAATGATTT ATAATCAAGC TTTAATTGAA ATTACAAAAC
AAGGTGCGGT GGCTGTAGAA GAGATTAAAT TTTCTCCACC AAAGTTACAA
ACATTAATAA GTTCAATTCA AAATGGAGGT TCACCAATTA TAAATAAAAA
TGGTAGTCCA GCTGCAAATG CTTTAAAAAA TAAACAAATT TTACAATTAC
AAGGTCAACA ACAACAGCAA CAACAACAAC AACAAAATCA TTCACAACAA
CAACACAATA ACCAATCGAG TGTTTATTCT TTAAATTCTT TAAATCCTTA
TTATGTACAA CAAGTTCTTT GTCAACTTCA AAAACCACAT AATTTTATAA
AACAAGTTCA TGTTGTAGTT AAAAACACAC CATTTGGTAT TTCAATGAAA
TCAAACGATC CACAATTCAA TTTTCATAAT TATGTTATTA AAGCTACACT
TCTCTATGAT TGTGATCCAC CAAAAATGGT AGATTTTATT CATAATGAAC
CATTACAATA TGTTGCAACC GTTAGTGAAG ATGGTACTGA AGTTGTTGTT
GATGTAAAGG TTGGTATTCT TTCATCACAA CATCAAGGCT CAATGTTTCT
TGCAGTTTTA CATATAAGTC ATACAAGTGT ACCATCCCCA TCACCTAATG
AACCAATTAT GACCATCTTG AATAATATAG GTGGTAATTC AATAGCAAAT
TTAAATTCCC AATTACCAAA TCCAATCTAT AATCTTTGTG TTGTTTCTCA
TCCAATTAGA ATCGTTTCAA AAGTTGATCA TGTTAAAAAA GAAGGTATAC
CAATATTAAA GAAAAAGACA TTTCATGAAA TTCTTACAGA TAAATTAAAG
AAATTACAAA AGTTTCAAGA TAGTCAAAGT AAATGGATTA AAAATTTATA
TCAACAACAT TTAATTGAAT TCGATATGGA ACCTTATTGT TCAAAAAAAG
ATCAAAATAA TAATAATAAT AATAATAATA GTAATTCCAA TTGTCAAAAT
GGTGGTGGTT CAATTTGTGA TGATTCTTCA AATTCTTCTA CCCCTTCATT
AAGTTCTTAT TCAAATGGTA ATAATAAATA TAATAATAAT AATAATGATT
CAAGTGAATC CGATGAATCT GATGACGATG ATAACAATGA TGATGACGAT
AATGATTCAA TCGATTTCAA TATTTCAAAA CAGAAAAATC AACAACATTT
ACAACAACAA TTATTAAATC ATCAATCAAA ACAACAAAAA GTATCTTCGA
CTAATAATAA TACTACCACT ACTACTTCCT CTTCTTTCTG CTTCTTCTAT
TACAACAAAA AACAACAACC TGTACAACCA CAACAACANA AACNACAAAN
TCCAATCGAG TAATTTTCNA AATTCATTTA ATAGAGTTGT CGAAGCATTT
AAATACGTAC CAGAATCTGA AAGAAAAGAT ATTATTCCGA AAATGGTTGA
ACAATTACGT TCTGATGATT TAGAGCAATT GGTTGCTACA TTTATGGATG
AACTTGGTGT TGGTGATGCA AATAGTGATG TATCATCAAC AAAAGGAGGT
AACAATAATA ATAACAATAG TATTGGTTGC TTCTGTGAGA ATTGTCCATC
CAAGAAAGAA TTAGAAAGGT TTCAAGGTTT ATGTATGAAC TTTTTCGTTC
CTCAATCAAC TTTAAATCCA ATGAATAATC AACAACTTTT ATATTCTTCA
TTATTTTCAT CATCAAATGA TAACAATACG CAAAGTCAAA TGAATAATTC
AATCTCTGTA AATAATCATC ACCATCATCA TCACCATCAA CCAAATAATT
CAAATCTAAC AAATGATTTA TTACAATTAC CAATAGTTTA ATATTACATC
CCTTATAACA ATACATTTGT ATTAATATTT ATTTATAAAA ATTGAAATTA
AAAATAAAAT AAAATAAAAA ATTATTATTT TAAATTTTAA A

Translated Amino Acid Sequence Contig-U11921-1

gisltk*pfgatnkfhsrkiiiykylkialsfs*fflifynffhf*kntliyiylyffln
iliiiltppiprk*INLNNFFKIHTHLNFFFFFFPKK---

---KKKMIYNQALIEITKQGAVAVEEIKFSPPKLQTLISSIQNGGSPIINKNGSPAANAL
KNKQILQLQGQQQQQQQQQQNHSQQQHNNQSSVYSLNSLNPYYVQQVLCQLQKPHNFIKQ
VHVVVKNTPFGISMKSNDPQFNFHNYVIKATLLYDCDPPKMVDFIHNEPLQYVATVSEDG
TEVVVDVKVGILSSQHQGSMFLAVLHISHTSVPSPSPNEPIMTILNNIGGNSIANLNSQL
PNPIYNLCVVSHPIRIVSKVDHVKKEGIPILKKKTFHEILTDKLKKLQKFQDSQSKWIKN
LYQQHLIEFDMEPYCSKKDQNNNNNNNNSNSNCQNGGGSICDDSSNSSTPSLSSYSNGNN
KYNNNNNDSSESDESDDDDNNDDDDNDSIDFNISKQKNQQHLQQQLLNHQSKQQKVSSTN
NNTTTTTSSSFCFFYYNKKQQPVQPQQXKXQXPIE*fskfi**scrsi*irtri*kkryy
seng*titf**fraigcyiyg*twcw*ck**ciinkrr*q***q*ywlll*elsiqerir
kvsrfmyelfrssinfksne*sttfiffiifiik**qyaksne*fnlck*sspssspstk
*fksnk*fititnslilhpl*qyiciniyl*klklkik*nkkllf*il

Homology Contig-U11921-1 vs CSM-Contig

Sequences producing significant alignments:                        (bits)  Value


Contig-U11921-1 (Contig-U11921-1Q) /CSM_Contig/Conti...  1356  0.0
Contig-U12717-1 (Contig-U12717-1Q) /CSM_Contig/Conti...    50  1e-05
Contig-U12127-1 (Contig-U12127-1Q) /CSM_Contig/Conti...    50  1e-05
Contig-U08455-1 (Contig-U08455-1Q) /CSM_Contig/Conti...    48  4e-05
Contig-U07288-1 (Contig-U07288-1Q) /CSM_Contig/Conti...    48  4e-05
Contig-U10219-1 (Contig-U10219-1Q) /CSM_Contig/Conti...    46  2e-04
Contig-U01585-1 (Contig-U01585-1Q) /CSM_Contig/Conti...    46  2e-04
Contig-U11680-1 (Contig-U11680-1Q) /CSM_Contig/Conti...    44  7e-04
Contig-U11340-1 (Contig-U11340-1Q) /CSM_Contig/Conti...    44  7e-04
Contig-U09721-1 (Contig-U09721-1Q) /CSM_Contig/Conti...    44  7e-04

Homology Contig-U11921-1 vs DNA

Sequences producing significant alignments:                  (bits) Value  N


(AU060926) Dictyostelium discoideum slug cDNA, clone SLC256.      957   0.0    2
(C83994) Dictyostelium discoideum slug cDNA, clone SLK680.       1019   0.0    2
(AU034205) Dictyostelium discoideum slug cDNA, clone SLC256.      991   0.0    1
(AF020285) Dictyostelium discoideum DG1062 gene, partial cds.     904   0.0    1
(C93404) Dictyostelium discoideum slug cDNA, clone SSM802.        551   e-152  1
(AU075044) Dictyostelium discoideum slug cDNA, clone SSM802.      476   e-129  1
(C91533) Dictyostelium discoideum slug cDNA, clone SSK402.        289   2e-73  1
(GR572774) CBTG974.b1 CBTG Dictyostelium purpureum 12 hr veg...   178   1e-72  4
(GR565071) CBTF1288.b1 CBTF Dictyostelium purpureum 12 hr ve...   178   1e-72  4
(BJ385223) Dictyostelium discoideum cDNA clone:ddc54a12, 3' ...   262   6e-65  1

Homology Contig-U11921-1 vs Protein

Sequences producing significant alignments:                      (bits) Value


AF020285_1(AF020285|pid:none) Dictyostelium discoideum DG1062 ge...   308   7e-82
(O00841) RecName: Full=Putative transcriptional regulator cudA;        86   4e-15
DQ407612_1(DQ407612|pid:none) Physarum polycephalum cudA-like pr...    65   1e-08
DQ407617_1(DQ407617|pid:none) Hartmannella vermiformis cudA-like...    60   4e-07
L39933_2(L39933|pid:none) Entamoeba histolytica pyridine nucleot...    46   0.007
DQ407616_1(DQ407616|pid:none) Hartmannella vermiformis cudA-like...    40   0.28
U20083_1(U20083|pid:none) Streptococcus pneumoniae isolate 23884...    36   6.9
U20084_1(U20084|pid:none) Streptococcus pneumoniae isolate 21241...    36   6.9
DQ071937_1(DQ071937|pid:none) Streptococcus pneumoniae isolate 1...    36   6.9
U20082_1(U20082|pid:none) Streptococcus pneumoniae isolate 53135...    36   6.9