Homology Contig-U11920-1 vs Protein
Query= Contig-U11920-1 (Contig-U11920-1Q) /CSM_Contig/Contig-U11920-1Q.Seq.d
(1283 letters)
Database: nrp_B
3,236,559 sequences; 1,051,180,864 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC128647_14(AC128647|pid:none) Oryza sativa (japonica cultivar-g... 102 3e-20
EU957082_1(EU957082|pid:none) Zea mays clone 1582403 KAP-2 mRNA,... 97 2e-18
AF293344_1(AF293344|pid:none) Phaseolus vulgaris KAP-2 (KAP-2) m... 94 1e-17
CR392344_3(CR392344|pid:none) Zebrafish DNA sequence from clone ... 93 2e-17
BC115208_1(BC115208|pid:none) Danio rerio X-ray repair complemen... 93 2e-17
AY877316_1(AY877316|pid:none) Danio rerio Ku80 protein (XRCC5) m... 93 2e-17
BC029218_1(BC029218|pid:none) Mus musculus X-ray repair compleme... 92 3e-17
AK167312_1(AK167312|pid:none) Mus musculus 14 days embryo liver ... 92 3e-17
AK081633_1(AK081633|pid:none) Mus musculus 16 days embryo head c... 92 4e-17
(P13010) RecName: Full=ATP-dependent DNA helicase 2 subunit 2; ... 91 7e-17
AF166486_1(AF166486|pid:none) Mus musculus Ku autoantigen (Ku80)... 91 9e-17
AK169838_1(AK169838|pid:none) Mus musculus 2 days neonate thymus... 91 9e-17
AK290740_1(AK290740|pid:none) Homo sapiens cDNA FLJ75456 complet... 91 1e-16
JC6099(JC6099) Ku autoantigen 86k chain - Chinese hamster &L486... 89 4e-16
BT061003_1(BT061003|pid:none) Zea mays full-length cDNA clone ZM... 88 6e-16
AB020609_1(AB020609|pid:none) Xenopus laevis mRNA for human Ku80... 86 2e-15
AF283758_1(AF283758|pid:none) Arabidopsis thaliana Ku80-like pro... 84 1e-14
AC010686_4(AC010686|pid:none) Homo sapiens BAC clone RP11-504L12... 83 2e-14
AK010416_1(AK010416|pid:none) Mus musculus ES cells cDNA, RIKEN ... 80 1e-13
AC051631_5(AC051631|pid:none) Arabidopsis thaliana chromosome 1 ... 79 4e-13
AC023673_26(AC023673|pid:none) Genomic sequence for Arabidopsis ... 76 2e-12
FN357621_16(FN357621|pid:none) Schistosoma mansoni genome sequen... 76 3e-12
(Q2MHH1) RecName: Full=Protein Ku80; &AB214652_1(AB214652|pid:n... 75 4e-12
(Q4WI96) RecName: Full=Protein Ku80; 72 4e-11
(Q2H6C5) RecName: Full=Protein Ku80; 70 2e-10
(Q5B4H8) RecName: Full=Protein Ku80; 69 3e-10
AM481988_1(AM481988|pid:none) Vitis vinifera contig VV78X237956.... 69 5e-10
(Q1E6K9) RecName: Full=Protein Ku80; 68 6e-10
(Q6C7B9) RecName: Full=Protein Ku80; &CR382131_85(CR382131|pid:... 67 1e-09
AY369854_1(AY369854|pid:none) Pan troglodytes Ku autoantigen (XR... 63 2e-08
(Q7RX73) RecName: Full=Protein Ku80; AltName: Full=Protein mus-52; 63 2e-08
CT005267_34(CT005267|pid:none) Leishmania major strain Friedlin,... 62 4e-08
AY369856_1(AY369856|pid:none) Macaca mulatta Ku autoantigen (XRC... 62 4e-08
AM920433_182(AM920433|pid:none) Penicillium chrysogenum Wisconsi... 59 3e-07
AM502248_66(AM502248|pid:none) Leishmania infantum chromosome 30. 55 4e-06
(Q0U8L4) RecName: Full=Protein Ku80; 52 4e-05
AE017342_136(AE017342|pid:none) Cryptococcus neoformans var. neo... 50 1e-04
AM117808_1(AM117808|pid:none) Sordaria macrospora partial ku70 g... 47 0.001
BC103218_1(BC103218|pid:none) Bos taurus X-ray repair complement... 45 0.004
AB177394_1(AB177394|pid:none) Neurospora crassa mus-51 gene for ... 45 0.006
AM920437_1551(AM920437|pid:none) Penicillium chrysogenum Wiscons... 45 0.007
AK146392_1(AK146392|pid:none) Mus musculus CRL-1722 L5178Y-R cDN... 43 0.028
U50378_1(U50378|pid:none) Mus musculus DNA repair enzyme (Ku 70)... 43 0.028
(P23475) RecName: Full=ATP-dependent DNA helicase 2 subunit 1; A... 43 0.028
AF483500_1(AF483500|pid:none) Mus musculus strain ILS Ku70 mRNA,... 43 0.028
(Q1DU75) RecName: Full=Protein Ku70; 42 0.062
(Q2H0I3) RecName: Full=Protein Ku70; 41 0.082
AM270339_4(AM270339|pid:none) Aspergillus niger contig An15c0120... 39 0.40
AB020608_1(AB020608|pid:none) Xenopus laevis mRNA for human Ku70... 39 0.53
BC077445_1(BC077445|pid:none) Xenopus laevis ATP-dependent DNA h... 39 0.53
BC075271_1(BC075271|pid:none) Xenopus tropicalis thyroid autoant... 37 1.5
CR940347_892(CR940347|pid:none) Theileria annulata strain Ankara... 37 1.5
CR542219_1(CR542219|pid:none) Homo sapiens full open reading fra... 36 2.6
Z83840_4(Z83840|pid:none) Human DNA sequence from clone CTA-216E... 36 2.6
BC109681_1(BC109681|pid:none) Bos taurus three prime histone mRN... 36 2.6
BT030668_1(BT030668|pid:none) Bos taurus three prime histone mRN... 36 2.6
AB168631_1(AB168631|pid:none) Macaca fascicularis testis cDNA cl... 36 2.6
FJ695615_1(FJ695615|pid:none) Piriformospora indica ATP:ADP anti... 36 2.6
BC154332_1(BC154332|pid:none) Danio rerio X-ray repair complemen... 36 3.4
AP009179_2003(AP009179|pid:none) Sulfurovum sp. NBC37-1 genomic ... 36 3.4
DQ859046_1(DQ859046|pid:none) Danio rerio Ku70 autoantigen mRNA,... 36 3.4
AX046430_1(AX046430|pid:none) Sequence 1 from Patent WO0012716. 36 3.4
AE014134_2724(AE014134|pid:none) Drosophila melanogaster chromos... 35 5.8
Z83840_5(Z83840|pid:none) Human DNA sequence from clone CTA-216E... 35 5.8
CP000448_1261(CP000448|pid:none) Syntrophomonas wolfei subsp. wo... 35 5.8
CP001034_1492(CP001034|pid:none) Natranaerobius thermophilus JW/... 35 5.8
BT044971_1(BT044971|pid:none) Salmo salar clone ssal-rgf-508-291... 34 10.0
>AC128647_14(AC128647|pid:none) Oryza sativa (japonica
cultivar-group) chromosome 3 clone OSJNBb0062G19,
complete sequence.
Length = 325
Score = 102 bits (254), Expect = 3e-20
Identities = 58/168 (34%), Positives = 96/168 (57%), Gaps = 9/168 (5%)
Frame = +2
Query: 131 KEAVVVILDIGLGMXXXXXXXXXXXXXXIEDALRSVTLLYQQKLIYGKKDQLGLVLIGTK 310
KEA+V++LD+G M +++ + L +KL+Y + D++G+VL GTK
Sbjct: 5 KEALVLLLDVGPSMHGV-----------LQEVENICSTLVHKKLVYNRSDEIGVVLFGTK 53
Query: 311 GTKNNLQDD--GYQHITVVSDIEEPSIETLKYLENLAPGESKGDVIDSLIVAMDMLIRKT 484
T N L + GY+H+ V DI+ ET L+NL G S GD +D+++V +DMLIRK
Sbjct: 54 ETSNELAKELGGYKHVVVARDIKVVDEETTNALQNLPRGTSPGDFLDAIVVGLDMLIRKF 113
Query: 485 ENKKYQKRIFLVTNARDPI-------NTEDLSIVRDQFKKIDVKLNII 607
N K ++R+ LVT+A+ P+ + + + DQ K+ ++K++ I
Sbjct: 114 GNIKGKQRMCLVTDAQHPLRDPPQGTKKDQVDTIADQMKRHEIKMDCI 161
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 1,560,441,618
Number of extensions: 25928572
Number of successful extensions: 65098
Number of sequences better than 10.0: 67
Number of HSP's gapped: 65014
Number of HSP's successfully gapped: 94
Length of query: 427
Length of database: 1,051,180,864
Length adjustment: 131
Effective length of query: 296
Effective length of database: 627,191,635
Effective search space: 185648723960
Effective search space used: 185648723960
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
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