Dictyostelium discoideum cDNA Contig-U11920-1

Assembled

Chromosomal Location of Contig-U11920-1

Sequence Contig-U11920-1

AATTTTTCAT TTTTAATAAA AGTAGTTGTA ACTGATACAC AATTAAATAA
ATATATAAAT AAAATAAATA AAATAATAAA ATAAATAAAA ATAAAAATTT
AAAAAAAAGA TGACAACTAC AATACCATTA AAAGAAGCAG TGGTTGTAAT
TTTAGATATA GGATTAGGTA TGACAAGTAA AGATAGTGAT GGAACAACAA
CAACAACATC ATCAATTGAA GATGCATTAA GATCAGTTAC ATTATTATAT
CAACAAAAAT TAATATATGG TAAAAAGGAT CAATTAGGAT TAGTTTTAAT
TGGAACAAAA GGTACAAAAA ACAATTTACA AGATGATGGA TATCAACATA
TTACAGTTGT AAGTGATATT GAAGAACCAT CAATTGAAAC ATTGAAATAT
TTAGAGAATT TAGCACCTGG TGAATCAAAA GGTGATGTCA TTGATTCATT
AATAGTTGCA ATGGATATGT TAATTAGAAA AACTGAAAAT AAAAAATATC
AAAAACGTAT TTTCCTTGTT ACAAATGCAA GAGATCCAAT TAATACTGAA
GATTTATCAA TTGTTAGAGA TCAATTTAAA AAAATAGATG TAAAATTAAA
TATAATAGGT GTTGACTTTT TAGAA----- -----CTGGT GGCAATACCA
ATGGCACAAC ATCCAATACA AACAATACAA TGATTGGTGG TGTAAAATAT
CATTGGAAAG ATGGTATGTT AATTGGTGAG GAAATTAATT TAGATTCCTA
TGTCACCGAT GATGGTTCCG AGGCTAAAAA GAGAAAGGTT AATGATTTCT
CAGAGTTTTC ATTGGATAAG TTGGTCTCTG GTTATGTTAC AGAGGTTGGT
ACAATTAATC CTGTTCAAAA CTTTAAAGAT ATGTTAAATA GAAGAGATAT
GGATCTTGTG GATAAAGCAA TCACTTTAAT GAAGGAAAGA ATACTTCAAT
TGGTTAATGA TTCACTTAGG GATCAATATT ATCAAAAGGC TTTCGAATGT
ATAAAAGAAT TAAGAGTTGG TTGTATTAGA GAATCAGAAG CTGAACAATT
CAATGGTTTC CTCAAAGATA TGAGATCTTT ATTTCAATCA AAGAAAAGAG
ATGACTTTTG GCAATATATC ACTGCTGATG TAACTTCAAT CCTTGGTGAG
AAATCAATTA ATTTAATCAC TCAAGATGAA TGCGATTCTT CTGAAGTTAC
TCAAGAAGAG TTGGATCAAT TTTTGGATAA AAAGGTTAAA CAATTCAATC
CTCCTCCAAT TACAAATGTT AATACAGATT CGG

Translated Amino Acid Sequence Contig-U11920-1

ifhf**k*l*lihn*ini*ik*ik**nk*k*KFKKKMTTTIPLKEAVVVILDIGLGMTSK
DSDGTTTTTSSIEDALRSVTLLYQQKLIYGKKDQLGLVLIGTKGTKNNLQDDGYQHITVV
SDIEEPSIETLKYLENLAPGESKGDVIDSLIVAMDMLIRKTENKKYQKRIFLVTNARDPI
NTEDLSIVRDQFKKIDVKLNIIGVDFLE---

---GGNTNGTTSNTNNTMIGGVKYHWKDGMLIGEEINLDSYVTDDGSEAKKRKVNDFSEF
SLDKLVSGYVTEVGTINPVQNFKDMLNRRDMDLVDKAITLMKERILQLVNDSLRDQYYQK
AFECIKELRVGCIRESEAEQFNGFLKDMRSLFQSKKRDDFWQYITADVTSILGEKSINLI
TQDECDSSEVTQEELDQFLDKKVKQFNPPPITNVNTDS

Homology Contig-U11920-1 vs CSM-Contig

Sequences producing significant alignments:                        (bits)  Value


Contig-U11920-1 (Contig-U11920-1Q) /CSM_Contig/Conti...  1441  0.0
Contig-U12210-1 (Contig-U12210-1Q) /CSM_Contig/Conti...    46  9e-05
Contig-U12168-1 (Contig-U12168-1Q) /CSM_Contig/Conti...    46  9e-05
Contig-U09693-1 (Contig-U09693-1Q) /CSM_Contig/Conti...    46  9e-05
Contig-U13860-1 (Contig-U13860-1Q) /CSM_Contig/Conti...    44  4e-04
Contig-U13688-1 (Contig-U13688-1Q) /CSM_Contig/Conti...    44  4e-04
Contig-U12482-1 (Contig-U12482-1Q) /CSM_Contig/Conti...    44  4e-04
Contig-U11515-1 (Contig-U11515-1Q) /CSM_Contig/Conti...    44  4e-04
Contig-U10713-1 (Contig-U10713-1Q) /CSM_Contig/Conti...    44  4e-04
Contig-U10062-1 (Contig-U10062-1Q) /CSM_Contig/Conti...    44  4e-04

Homology Contig-U11920-1 vs DNA

Sequences producing significant alignments:                  (bits) Value  N


(BJ385147) Dictyostelium discoideum cDNA clone:ddc54a04, 3' ...  1279   0.0    1
(BJ442114) Dictyostelium discoideum cDNA clone:ddv48k20, 3' ...  1273   0.0    1
(BJ423343) Dictyostelium discoideum cDNA clone:ddv48k20, 5' ...   731   0.0    4
(BJ395507) Dictyostelium discoideum cDNA clone:dds39j05, 5' ...   724   0.0    4
(BJ370398) Dictyostelium discoideum cDNA clone:ddc54a04, 5' ...   731   0.0    3
(BJ382252) Dictyostelium discoideum cDNA clone:ddc44j04, 3' ...   724   0.0    2
(AC007123) Arabidopsis thaliana BAC F21A20 from chromosome V...    36   0.023  7
(AP010649) Lotus japonicus genomic DNA, chromosome 5, clone:...    46   0.054  3
(AC130601) Oryza sativa Japonica Group chromosome 5 clone OS...    52   0.057  1
(AC108873) Oryza sativa Japonica Group chromosome 5 clone OJ...    52   0.057  1

Homology Contig-U11920-1 vs Protein

Sequences producing significant alignments:                      (bits) Value


AC128647_14(AC128647|pid:none) Oryza sativa (japonica cultivar-g...   102   3e-20
EU957082_1(EU957082|pid:none) Zea mays clone 1582403 KAP-2 mRNA,...    97   2e-18
AF293344_1(AF293344|pid:none) Phaseolus vulgaris KAP-2 (KAP-2) m...    94   1e-17
CR392344_3(CR392344|pid:none) Zebrafish DNA sequence from clone ...    93   2e-17
BC115208_1(BC115208|pid:none) Danio rerio X-ray repair complemen...    93   2e-17
AY877316_1(AY877316|pid:none) Danio rerio Ku80 protein (XRCC5) m...    93   2e-17
BC029218_1(BC029218|pid:none) Mus musculus X-ray repair compleme...    92   3e-17
AK167312_1(AK167312|pid:none) Mus musculus 14 days embryo liver ...    92   3e-17
AK081633_1(AK081633|pid:none) Mus musculus 16 days embryo head c...    92   4e-17
(P13010) RecName: Full=ATP-dependent DNA helicase 2 subunit 2;  ...    91   7e-17