<Clone: Contig-U11919-1> <SEQ> <Translated> <CONTIG> <DNA> <Protein> <PSORT> <MOTIF>

Dictyostelium discoideum cDNA Contig-U11919-1

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Assembled

Chromosomal Location of Contig-U11919-1

< more Chromosomal info >

Chromosome Number 5
Length 5062330
Start Poin 4,287,000
End Point 4,285,877
Strand MINUS

Sequence Contig-U11919-1

ATNAATTGCA TCAAGATATG GTTTCGTTAA AGGTTTAGTC ATTCGTTCTA
AATTATTACA TCAATTCATT TGGTCATTCG CTGTTAAATT TACAAATGGT
TCCTTACATA GAAATAATGG TGTTAATACT GAAAATAAAA CAAAAAGTAA
TGATATTGAA ATGAAAGAAG GATCACCATC ATCAACAACA TCAACAACAG
CAACAGATAA TAATAATAAT AATAATAATG AAGTTAAAGA TGAAAGTAAT
TTACAATTGG TATTATATAA AGAAGTATTA AATGAATCAA CTAGAATATT
TTTAAATTTA TTATTAAAAT ATTTACCAAT TGATGATTAT TTAAAGATTG
TTTCACAAAA TATAGAGATA CCANGATTGG ATGAACATAT TAAAAAGGGT
ACATTAATTA TTGATTTACC AAAGCCAATA AAGAATTCAT TGT-------
---------- ---NNNNNNN NNCCTAGTAT TAAAATGATT GGTTCTCAAA
ATGATCAAAT AAGTAAAAAG GATTCAAATA GAGTTATGGA TGGTTTGTAT
TATGATAAAA TCATAAAGAA TGTTAAATCC AAATCAACTG AACGTTCAAT
TGGTTTTTGT ATTCAAAAGA TTCTTTACAA AGTAAATAGT TACAATAGGG
AATTCNTTGA TGAAAATCGT GTTTTCCTTT CAATGATTAA AGAATATCCA
ATTGTAAATG ATCATACTGC TGCTGCTGCT AGTAAACAAC AAATTTTTAG
TAAAGTTGGT ATCACTAACA ATGGTGATGA GGATGATGTT CAATTATTCG
AATATGATCC ATTAACAAGT GGTGGATCTG TCTCTTCAAT GTTATACCTT
TTAACCAATA ACAAAGTTTC ACCAAATATT TTAATTAAAT CAACATTTGA
TCCAAAACTT GAAAAAGCTC CAAAACTTAG AGATGCTTCA AATCAACGTT
TAGAATCTAT TGTTAATAAA ATTGGTGTAT CCTATAAACT TCAAGATTAT
ATAGATTATT CCTATATTGA AAATGAAAGA AAAAGAGCAA TTAATCCTGA
TGTTATTGGT ATAAATGATC CATTATCAAC TGAAAAATTA AAATTCCAAG
AAATCTTTAA ATCATCAAAT AATAATAAAA ATAAATAAAT AATAATAAAA
A

Translated Amino Acid Sequence Contig-U11919-1

<All Frames> 
XIASRYGFVKGLVIRSKLLHQFIWSFAVKFTNGSLHRNNGVNTENKTKSNDIEMKEGSPS
STTSTTATDNNNNNNNEVKDESNLQLVLYKEVLNESTRIFLNLLLKYLPIDDYLKIVSQN
IEIPXLDEHIKKGTLIIDLPKPIKNSLXXX---

---XXXPSIKMIGSQNDQISKKDSNRVMDGLYYDKIIKNVKSKSTERSIGFCIQKILYKV
NSYNREFXDENRVFLSMIKEYPIVNDHTAAAASKQQIFSKVGITNNGDEDDVQLFEYDPL
TSGGSVSSMLYLLTNNKVSPNILIKSTFDPKLEKAPKLRDASNQRLESIVNKIGVSYKLQ
DYIDYSYIENERKRAINPDVIGINDPLSTEKLKFQEIFKSSNNNKNK*iiik


Homology Contig-U11919-1 vs CSM-Contig

<more CONTIG info> 
Sequences producing significant alignments:                        (bits)  Value


Contig-U11919-1 (Contig-U11919-1Q) /CSM_Contig/Conti...  1271  0.0
Contig-U11579-1 (Contig-U11579-1Q) /CSM_Contig/Conti...    54  3e-07
Contig-U11332-1 (Contig-U11332-1Q) /CSM_Contig/Conti...    52  1e-06
Contig-U09660-1 (Contig-U09660-1Q) /CSM_Contig/Conti...    50  5e-06
Contig-U12391-1 (Contig-U12391-1Q) /CSM_Contig/Conti...    46  8e-05
Contig-U11867-1 (Contig-U11867-1Q) /CSM_Contig/Conti...    44  3e-04
Contig-U11450-1 (Contig-U11450-1Q) /CSM_Contig/Conti...    44  3e-04
Contig-U11391-1 (Contig-U11391-1Q) /CSM_Contig/Conti...    44  3e-04
Contig-U05173-1 (Contig-U05173-1Q) /CSM_Contig/Conti...    44  3e-04
Contig-U02779-1 (Contig-U02779-1Q) /CSM_Contig/Conti...    44  3e-04


Homology Contig-U11919-1 vs DNA

<more DNA info> 
Sequences producing significant alignments:                  (bits) Value  N


(BJ385358) Dictyostelium discoideum cDNA clone:ddc54o13, 3' ...  1203   0.0    1
(BJ370595) Dictyostelium discoideum cDNA clone:ddc54o13, 5' ...   418   0.0    2
(BX293980) Mycoplasma mycoides subsp. mycoides SC str. PG1, ...    38   8e-06  21
(CP000942) Ureaplasma parvum serovar 3 str. ATCC 27815, comp...    38   2e-05  22
(AF222894) Ureaplasma parvum serovar 3 str. ATCC 700970, com...    38   2e-05  22
(DY892875) CeleSEQ11902 Cunninghamella elegans pBluescript (...    58   8e-04  1
(CP001078) Clostridium botulinum E3 str. Alaska E43, complet...    44   0.002  18
(BJ406451) Dictyostelium discoideum cDNA clone:dds35e09, 3' ...    56   0.003  1
(EY376211) CAXA16053.fwd CAXA Helobdella robusta Subtracted ...    56   0.003  1
(EY376210) CAXA16053.rev CAXA Helobdella robusta Subtracted ...    56   0.003  1


Homology Contig-U11919-1 vs Protein

<more Protein info> 
Sequences producing significant alignments:                      (bits) Value


CP000084_914(CP000084|pid:none) Candidatus Pelagibacter ubique H...    39   0.45
CR940347_894(CR940347|pid:none) Theileria annulata strain Ankara...    38   0.77
CP001184_324(CP001184|pid:none) Ureaplasma urealyticum serovar 1...    37   1.3
AE001437_224(AE001437|pid:none) Clostridium acetobutylicum ATCC ...    36   2.9
CP000962_726(CP000962|pid:none) Clostridium botulinum A3 str. Lo...    35   5.0
CP000685_3835(CP000685|pid:none) Flavobacterium johnsoniae UW101...    34   8.6
(P0C8Z6) RecName: Full=Putative neugrin-like protein DDB_G0288135;     34   8.6


<Clone: Contig-U11919-1> <SEQ> <Translated> <CONTIG> <DNA> <Protein> <PSORT> <MOTIF>

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