Dictyostelium discoideum cDNA Contig-U11910-1

Assembled

Chromosomal Location of Contig-U11910-1

Sequence Contig-U11910-1

ACTGTTGGCC TACTGGNATT TTTAATTCAC TTTTTTGCAC ACCACAAAAC
ACCAAGNAAA ATATATTTCT TTTTATTGTT ATATTTCCAC TCCTCATAAT
AAAAATCACA TTACAATAGA TTTATGTTTT AAAAAAAAAA AAAANTTAAA
AAAAAAA--- ---------- -------NNN NNNNNNAAGT TATTATACGA
TACAGATGTT GAAGTTTCAA TTGCAACTAG ATTCCACTTT TTACCATCAT
TAGCGAATTG GGCAGATCTA TTGGAATCAT TAAATTCAAA ATTAACAAAT
TTCTTATTAA CTGAAATGTT ATCAATTCTA ATTAAATATT CAGCACAAAA
AGATGAATTT AAAATTCCAG AACAAGATAC ATTCAAATTA GATCAATTAC
TTCAATGTTT TATTGATTTA ATACCAAGAA TTCATCAATC TGTCATTTCT
TCTTCAATCT TTATAAATGA AAAAGATGCA TTACAAATTG AAAATGAATA
TAATAAACAA GAAGCATTAT ATCAATTTCA AATTAATAAT CAAAATCAAA
ATAATAATAA TAATTCAACT ACGACGACAA CTACAACAAC AACTTCTACA
AATACAAATA ATTCATCATC ATCATCAAAT TCAACAACAA ATAATAATAA
TAATAATAAA GATAATAAAA CAATTGGTAG TAGTACAATT ATAAATTCAG
CAATTAGAAT TTCAATTTTA GGTAATAATG AAATTTCAAA ACTACAATCA
CAATTTGAAA ATT

Translated Amino Acid Sequence Contig-U11910-1

llaywxf*FTFLHTTKHQXKYISFYCYISTPHNKNHITIDLCFKKKKXLKKKXXX---

---XXXKLLYDTDVEVSIATRFHFLPSLANWADLLESLNSKLTNFLLTEMLSILIKYSAQ
KDEFKIPEQDTFKLDQLLQCFIDLIPRIHQSVISSSIFINEKDALQIENEYNKQEALYQF
QINNQNQNNNNNSTTTTTTTTTSTNTNNSSSSSNSTTNNNNNNKDNKTIGSSTIINSAIR
ISILGNNEISKLQSQFEN

Homology Contig-U11910-1 vs CSM-Contig

Sequences producing significant alignments:                        (bits)  Value


Contig-U11910-1 (Contig-U11910-1Q) /CSM_Contig/Conti...   652  0.0
Contig-U11511-1 (Contig-U11511-1Q) /CSM_Contig/Conti...    48  1e-05
Contig-U11241-1 (Contig-U11241-1Q) /CSM_Contig/Conti...    48  1e-05
Contig-U09396-1 (Contig-U09396-1Q) /CSM_Contig/Conti...    48  1e-05
Contig-U13873-1 (Contig-U13873-1Q) /CSM_Contig/Conti...    46  6e-05
Contig-U13162-1 (Contig-U13162-1Q) /CSM_Contig/Conti...    46  6e-05
Contig-U12528-1 (Contig-U12528-1Q) /CSM_Contig/Conti...    46  6e-05
Contig-U11253-1 (Contig-U11253-1Q) /CSM_Contig/Conti...    46  6e-05
Contig-U01120-1 (Contig-U01120-1Q) /CSM_Contig/Conti...    46  6e-05
Contig-U10989-1 (Contig-U10989-1Q) /CSM_Contig/Conti...    44  2e-04

Homology Contig-U11910-1 vs DNA

Sequences producing significant alignments:                  (bits) Value  N


(BJ383606) Dictyostelium discoideum cDNA clone:ddc53i18, 3' ...   615   0.0    2
(BJ370293) Dictyostelium discoideum cDNA clone:ddc53i18, 5' ...   246   1e-60  1
(BJ412794) Dictyostelium discoideum cDNA clone:ddv9k23, 5' e...    42   0.063  2
(BJ415870) Dictyostelium discoideum cDNA clone:ddv24b06, 5' ...    50   0.13   1
(BJ387278) Dictyostelium discoideum cDNA clone:dds1c09, 5' e...    50   0.13   1
(EI850685) CAH1-17E13TR CAA1Ba Cicer arietinum genomic clone...    34   0.38   2
(AC225502) Medicago truncatula clone mth2-58c24, WORKING DRA...    40   0.48   4
(CU896676) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    48   0.52   1
(BJ338419) Dictyostelium discoideum cDNA clone:dda61o08, 5' ...    48   0.52   1
(BJ325655) Dictyostelium discoideum cDNA clone:dda1h20, 5' e...    48   0.52   1

Homology Contig-U11910-1 vs Protein

Sequences producing significant alignments:                      (bits) Value


CP000361_330(CP000361|pid:none) Arcobacter butzleri RM4018, comp...    35   2.0
CP000033_1759(CP000033|pid:none) Lactobacillus acidophilus NCFM,...    35   2.0
AM180622_7(AM180622|pid:none) Pichia acaciae plasmid pPac1-1.          34   5.7
AK135452_1(AK135452|pid:none) Mus musculus 12 days embryo female...    33   9.8
AF319975_1(AF319975|pid:none) Mus musculus mage-d1 mRNA, complet...    33   9.8
AK220150_1(AK220150|pid:none) Mus musculus mRNA for mFLJ00163 pr...    33   9.8
BC031461_1(BC031461|pid:none) Mus musculus melanoma antigen, fam...    33   9.8
(Q2UG94) RecName: Full=Mediator of RNA polymerase II transcripti...    33   9.8
AP007157_829(AP007157|pid:none) Aspergillus oryzae RIB40 genomic...    33   9.8
AB125203_1(AB125203|pid:none) Macaca fascicularis MAGED1 mRNA fo...    33   9.8