Dictyostelium discoideum cDNA Contig-U11904-1

Assembled

Chromosomal Location of Contig-U11904-1

NO HIT FOUND.

Sequence Contig-U11904-1

TGTTGGCCTA CTGGGTGACT AATAAAAAGT AATAATAGTT ATTTTTTTTA
TATATATAAA AAAACAAACA AAAATGTCGA CACCATGGGG AAAAGCACTT
GACCAAGCAA ATATTGTAAG GGCAAGTTTT AATGACTTGG ATAGATCTGT
TATTAAAGCA ACCAGACATA AGTTAAGAAT TCCAAAAGAA AAACATGTTA
GAAAATTAAT TATCTACACC CATGAAAGAC TTGGACCAAT TGGTGATTTA
TATCAAAGTT TATTAAAAAG AATGGAACAA CCGGACTGGA TTATTGTTTT
AAAAACTTTA ATTGTATTTC ATAGAGTTTT GGCAGGTGGT AATACAAGAT
TTTTAGAGGA TTTAACACAT AGAGGTAATG TATTCCCATT ATCAAGATTC
ACAGATATGA CATCGACTCA AGCACATCAA CAATCTGTTT TCATTAGAAG
ATATTCATCT TATTTAGAGG AGAAAGTATT TGCATTTAGA GAGATGAGAC
AAGAATTTGA TAAGGATACC TTTTCTTCAA AAGGTTTAAC AATTGAACAA
CTTTTAACAA GAATTCCAAA AATGCAAAGA CAATTCGATG CATTATTAGC
AACTCATGTT GAAGAAGTTT GTGATAATAT CATCACTATC AATGCTTTTG
AATTAT---- ------ATAG TTTAAATCTC AATGATTTTA ATTTCACACC
AAATACTAAT GTCAATAGTA GTAATAATAA TAATAATATG AAGAGTGCAC
CATCAACATT GGTTCCAACT CAAAATAGAA ATAACAATGG TATGATGAAC
AATAATGATA TGATGAATAA TAATAATAAT GGTATGATGA TGAATAATAA
TAATAACAGT ATGATGATGA TGCAACAACA ACAACACCAA CCAATGAATA
ATGGTTTTGG TATGCAACAA CAACAACCAA TGAATAATGG TATGGGTTTC
AATAATAGTA ACAACAATAT GAATAATAAT ATGATGAGAC CTAACCAACC
AATGAGCAAC GGTATGGGAA TGGGAATGCA ACAACAACCA ATGGGATTCA
ATAATGGTAT GATGAATAAT GGCATGCAAC AACCAATGAA TAATGGATTC
GGTATGCAAC AACAACCAAT GAATAATGGT ATGGGTTTCA ATAATAGTAA
CAACAATATG AATAATAATA TGATGAGACC TAATCAACCA ATGATGCAAC
CAAATCAATA TCAACAACAA CAACAACAAC AACAACAACA ACAGCAACAA
CAACAACAAC AAAATGGTTC ACCACAACAA CCACATGTAA ATAATAATAA
CAATAATAAT ATTCAACAAA ATAAAGATCA TCAATTTCCG GTACCAACAA
TACCGGCAAA GATAATTGAA GTAGAAAAAC CTTTTGAATG GGAAGTACCA
CTTTCAGAGA TTGCAATTGG TGCTAGAATT GGAAGAGGTG GATATGGTCA
AGTTTTTAGA GGTTCATGGA GAGGAACAGA AGTAGCAGTG AAAATGCTTT
TTAATGACAA TGTAAATTTA AAACTTATTA GTGATCTAAG AAAAGAGGTG
GACTTATTGT GTAAATTAAG ACATCCAAAC ATCGTTTTAT TTATGGGTGC
TTGTACTGAA CCATCATCAC CTTGTATTGT TACAGAATAT TTATCACGTG
GTTCATTGGC AAACATTTTA TTGGATGAAT CGATAGAAAT GGATTGGGGA

Translated Amino Acid Sequence Contig-U11904-1

vgllgd**KVIIVIFFIYIKKQTKMSTPWGKALDQANIVRASFNDLDRSVIKATRHKLRI
PKEKHVRKLIIYTHERLGPIGDLYQSLLKRMEQPDWIIVLKTLIVFHRVLAGGNTRFLED
LTHRGNVFPLSRFTDMTSTQAHQQSVFIRRYSSYLEEKVFAFREMRQEFDKDTFSSKGLT
IEQLLTRIPKMQRQFDALLATHVEEVCDNIITINAFEL---

---SLNLNDFNFTPNTNVNSSNNNNNMKSAPSTLVPTQNRNNNGMMNNNDMMNNNNNGMM
MNNNNNSMMMMQQQQHQPMNNGFGMQQQQPMNNGMGFNNSNNNMNNNMMRPNQPMSNGMG
MGMQQQPMGFNNGMMNNGMQQPMNNGFGMQQQPMNNGMGFNNSNNNMNNNMMRPNQPMMQ
PNQYQQQQQQQQQQQQQQQQQNGSPQQPHVNNNNNNNIQQNKDHQFPVPTIPAKIIEVEK
PFEWEVPLSEIAIGARIGRGGYGQVFRGSWRGTEVAVKMLFNDNVNLKLISDLRKEVDLL
CKLRHPNIVLFMGACTEPSSPCIVTEYLSRGSLANILLDESIEMDWG

Homology Contig-U11904-1 vs CSM-Contig

Sequences producing significant alignments:                        (bits)  Value


Contig-U11904-1 (Contig-U11904-1Q) /CSM_Contig/Conti...  1223  0.0
Contig-U11827-1 (Contig-U11827-1Q) /CSM_Contig/Conti...    46  1e-04
Contig-U13830-1 (Contig-U13830-1Q) /CSM_Contig/Conti...    44  5e-04
Contig-U00078-1 (Contig-U00078-1Q) /CSM_Contig/Conti...    44  5e-04
Contig-U11888-1 (Contig-U11888-1Q) /CSM_Contig/Conti...    42  0.002
Contig-U12128-1 (Contig-U12128-1Q) /CSM_Contig/Conti...    40  0.008
Contig-U11059-1 (Contig-U11059-1Q) /CSM_Contig/Conti...    40  0.008
Contig-U04549-1 (Contig-U04549-1Q) /CSM_Contig/Conti...    40  0.008
Contig-U13963-1 (Contig-U13963-1Q) /CSM_Contig/Conti...    38  0.031
Contig-U13390-1 (Contig-U13390-1Q) /CSM_Contig/Conti...    38  0.031

Homology Contig-U11904-1 vs DNA

Sequences producing significant alignments:                  (bits) Value  N


(BJ427130) Dictyostelium discoideum cDNA clone:ddv61k07, 5' ...  1154   0.0    2
(BJ370040) Dictyostelium discoideum cDNA clone:ddc52n21, 5' ...   926   0.0    5
(BJ363949) Dictyostelium discoideum cDNA clone:ddc29b07, 5' ...   771   0.0    1
(BJ324232) Dictyostelium discoideum cDNA clone:dda5l08, 5' e...   771   0.0    1
(BJ383412) Dictyostelium discoideum cDNA clone:ddc52n21, 3' ...   527   0.0    3
(BJ446017) Dictyostelium discoideum cDNA clone:ddv61k07, 3' ...   533   e-159  2
(AU060880) Dictyostelium discoideum slug cDNA, clone SLB863.      170   1e-37  1
(BJ361218) Dictyostelium discoideum cDNA clone:ddc16a12, 5' ...    50   3e-09  4
(GR580531) CBZY612.g1 CBZY Dictyostelium purpureum 18 hr sta...    38   4e-07  5
(AU086536) Plasmodium falciparum 3D7 cDNA clone from Sugano ...    46   2e-06  2

Homology Contig-U11904-1 vs Protein

Sequences producing significant alignments:                      (bits) Value


AJ719608_1(AJ719608|pid:none) Gallus gallus mRNA for hypothetica...   113   2e-23
AB210017_1(AB210017|pid:none) Homo sapiens mRNA for PICALM varia...   112   5e-23
BC021491_1(BC021491|pid:none) Mus musculus phosphatidylinositol ...   112   5e-23
BC100142_1(BC100142|pid:none) Rattus norvegicus phosphatidylinos...   112   5e-23
BC057683_1(BC057683|pid:none) Mus musculus phosphatidylinositol ...   112   5e-23
AY706215_1(AY706215|pid:none) Rattus norvegicus clathrin-assembl...   112   5e-23
AK162360_1(AK162360|pid:none) Mus musculus adult male epididymis...   112   5e-23
BC064357_1(BC064357|pid:none) Homo sapiens phosphatidylinositol ...   112   5e-23
(Q921L0) RecName: Full=Phosphatidylinositol-binding clathrin ass...   112   5e-23
AF041373_1(AF041373|pid:none) Rattus norvegicus clathrin assembl...   112   5e-23