Dictyostelium discoideum cDNA Contig-U11902-1

Assembled

Chromosomal Location of Contig-U11902-1

Sequence Contig-U11902-1

ACTGTTGGCC TACTGGTATT ATTTTTTTTT TTTAAAAAAC CTTATTACCA
TCACATTTAT AATATTATTA TTATTATTAT TATTATTATT ATAATTATTA
TTTTTTTATT ATTAAAAATA AATTATTATT TTATTTTAAT AAAATAAAAT
AAAANTAAAA AAAATAAAAA TAAAAGGACT TTCTTTAAAA AGATTAAAAN
CATTTTTAAA AAAAAAA--- -------NNN NNNNNNATCC TTTAATTTCC
ATTTACTTTT ATTTTTTATT ATTTTTTTTT TTTAAAAAAC CTTATTACCA
TCACATTTAT AATAATAATA ATATTACACC AAGAATTACA CCATATTCAC
CATTAAAAAC AAGTAGTAAT TTATTAAAAA GAAGTTCACA TAAGGTTAAG
AATGAATAAA TCAGAATATC AAAGATTATA TTTCTCATCA AAAGATGGTG
GACTTTGGAT TAATGATTTA CCATTAAAGA TAAAGGGAGT ATCATGGTTT
GGTGGTGAAT GTGAAACTTA TTGTGTTCAT GGATTATGGG CAAGAGATTA
TAAACAATAT TTAGATTTCT TAAAAGAGAA TACATTCAAT GCAATTAGAA
TACCATTCTC CTATGAGATG GTAGTTAAAG ATCCATTCCC AACATCAATT
ACAATCAATC AACAAATGAA TAAGGATCTA TATGGATTGC GAGCATTATC
AGTATTGGAT TTAATTATTG AAGCAGCTGG TGAACGTGGA ATTCTAATTC
TATTGGATTT CCATTCATTC GGTCCAAATG ATAGATTGAA TCATGGTTTA
TGGTATTCTT CAAAACATTC AGAATCCTGA TGTAATGAAA ATGTTCAATA
TATTAATACT ACGTTATGGT CAAATGTGGA ATGTTTTAGG TATAGATTTA
AAGAATGAAC CATTCGCTGC AACTTGGAAT AGTGGTAATG AGAAAACAGA
TTGGGATAAG GCAATCAATA GAATCGGTGC ATACATTCAA AATAATGGTG
GTAATCAATG GTTGATTTTC GGCCAAGGTA TACCATCCCA AACTTGCTGA
TAAAATAGCA TGTTGGGGTG AAAGTTTTGA GCAGGAGGGT GTAAAAGGTG
GTCAAACAAC AATTAATTTA CCTTTAAATG ATAAATTTGT TTACTCTCCT
CACTGCTATG GTCCGTCCGT TGTCAACCAT CCACATTTCA ATCATAAAGA
TTATCCACAC AATTTAAAAC CTCATTGGGA TCAAAATTTT GGTAATTTAG
CAACAAATAC TAAAAGAGGT GTAGTAATTG GTGAATGGGG TGGAAAATAT
ATAACTCCAA TGGATCAATT ATGGATGGAT ACTTTTGTTG ATTACTTAAT
TTCAAAAGGT ACAACAGATA GTTTTTATTG GTGTTTAAAT CCAAATAGTG
GTGATACTGG TGGTTTATAT TTAGATGATT GGGTATCTAC AAATCTTCCA
AAATTGAATT TATTAAATAA ATTATGTCCT CATCCCACAA AAATTAAATT
GGATAAAGAT ACAATGATAT ATAAAATAAC ATCAGTTGTA ACAGCAACGT
CTGAAGCATA AATAAAATTA AATAAAATAA AACCAATAAT TTTATTACAA
ATATAAAAAA AAAAAAAAAA A

Translated Amino Acid Sequence Contig-U11902-1

llaywyyffflknlititfiilllllllll*llffyy*k*iiilf**NKIKXKKIKIKGL
SLKRLKXFLKKKXXX---

---PLISIYFYFLLFFFFKKPYYHHIYNNNNITPRITPYSPLKTSSNLLKRSSHKVKNE*
iriskiiflikrwwtld**ftikdkgsimvww*m*nllcswimgkrl*tifrflkreyiq
cn*ntill*dgs*rsipninynqstne*gsiwiasiisigfny*ssw*twnsnsigfpfi
rsk**ieswfmvffktfrilm**kcsiy*yyvmvkcgmf*v*i*rmnhslqlgivvmrkq
igirqsiesvhtfkimvving*fsakvyhpkladkiacwgesfeqegvkggqttinlpln
dkfvysphcygpsvvnhphfnhkdyphnlkphwdqnfgnlatntkrgvvigewggkyitp
mdqlwmdtfvdyliskgttdsfywclnpnsgdtgglylddwvstnlpklnllnklcphpt
kikldkdtmiykitsvvtatsea*iklnkikpiillqi*kkkkk

Homology Contig-U11902-1 vs CSM-Contig

Sequences producing significant alignments:                        (bits)  Value


Contig-U11902-1 (Contig-U11902-1Q) /CSM_Contig/Conti...  2526  0.0
Contig-U14143-1 (Contig-U14143-1Q) /CSM_Contig/Conti...    42  0.002
Contig-U12661-1 (Contig-U12661-1Q) /CSM_Contig/Conti...    42  0.002
Contig-U10963-1 (Contig-U10963-1Q) /CSM_Contig/Conti...    42  0.002
Contig-U03623-1 (Contig-U03623-1Q) /CSM_Contig/Conti...    42  0.002
Contig-U02912-1 (Contig-U02912-1Q) /CSM_Contig/Conti...    42  0.002
Contig-U14248-1 (Contig-U14248-1Q) /CSM_Contig/Conti...    40  0.007
Contig-U13873-1 (Contig-U13873-1Q) /CSM_Contig/Conti...    40  0.007
Contig-U13531-1 (Contig-U13531-1Q) /CSM_Contig/Conti...    40  0.007
Contig-U14126-1 (Contig-U14126-1Q) /CSM_Contig/Conti...    34  0.45

Homology Contig-U11902-1 vs DNA

Sequences producing significant alignments:                  (bits) Value  N


(BJ408255) Dictyostelium discoideum cDNA clone:dds45p06, 3' ...  1017   0.0    2
(BJ401756) Dictyostelium discoideum cDNA clone:dds19e11, 3' ...  1017   0.0    2
(BJ377785) Dictyostelium discoideum cDNA clone:ddc25m19, 3' ...  1005   0.0    2
(BJ401259) Dictyostelium discoideum cDNA clone:dds22m13, 3' ...  1003   0.0    2
(BJ373796) Dictyostelium discoideum cDNA clone:ddc4d04, 3' e...   902   0.0    4
(BJ373802) Dictyostelium discoideum cDNA clone:ddc4f06, 3' e...   896   0.0    4
(BJ390058) Dictyostelium discoideum cDNA clone:dds21d05, 5' ...   854   0.0    3
(AU038367) Dictyostelium discoideum slug cDNA, clone SSH623.     1045   0.0    1
(BJ383313) Dictyostelium discoideum cDNA clone:ddc52h13, 3' ...   884   0.0    2
(BJ390500) Dictyostelium discoideum cDNA clone:dds22m13, 5' ...  1019   0.0    1

Homology Contig-U11902-1 vs Protein

Sequences producing significant alignments:                      (bits) Value


BA000001_1206(BA000001|pid:none) Pyrococcus horikoshii OT3 DNA, ...   107   2e-52
AJ248285_306(AJ248285|pid:none) Pyrococcus abyssi complete genom...   119   3e-52
AE008923_609(AE008923|pid:none) Xanthomonas axonopodis pv. citri...   108   4e-49
CP000512_2065(CP000512|pid:none) Acidovorax citrulli AAC00-1, co...   101   1e-47
AJ304415_1(AJ304415|pid:none) Xanthomonas campestris pv. campest...   105   2e-47
(P19487) RecName: Full=Major extracellular endoglucanase;       ...   105   2e-47
AE013598_3926(AE013598|pid:none) Xanthomonas oryzae pv. oryzae K...   102   1e-45
A35136(A35136)cellulase (EC 3.2.1.4) - Bacillus polymyxa               95   1e-45
AF345984_1(AF345984|pid:none) Paenibacillus sp. KCTC8848P endo-b...    98   2e-45
(P23548) RecName: Full=Endoglucanase;          EC=3.2.1.4; AltNa...    94   2e-45