Homology Contig-U11887-1 vs DNA
Query= Contig-U11887-1 (Contig-U11887-1Q) /CSM_Contig/Contig-U11887-1Q.Seq.d
(427 letters)
Database: ddbj_A
108,600,042 sequences; 106,710,029,556 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value N
(BJ384794) Dictyostelium discoideum cDNA clone:ddc50a24, 3' ... 549 e-152 1
(BJ369482) Dictyostelium discoideum cDNA clone:ddc50a24, 5' ... 70 4e-14 2
(Z83103) Caenorhabditis elegans Cosmid D1025. 52 0.018 1
(FG539985) OtL012C03_010407d Onthophagus taurus larval libra... 52 0.018 1
(EA333246) Sequence 5738 from patent US 7306913. 50 0.072 1
(EA333194) Sequence 5686 from patent US 7306913. 50 0.072 1
(GP148422) Sequence 17885 from patent US 7482117. 50 0.072 1
(GP148288) Sequence 17751 from patent US 7482117. 50 0.072 1
(GC656336) Sequence 651 from patent US 7432056. 50 0.072 1
(AR659745) Sequence 786 from patent US 6900016. 50 0.072 1
(AR659551) Sequence 592 from patent US 6900016. 50 0.072 1
(AR582726) Sequence 651 from patent US 6794143. 50 0.072 1
(AY527817) Homo sapiens arachidonate 12-lipoxygenase (ALOX12... 50 0.072 1
(AC040977) Homo sapiens chromosome 17, clone RP11-589P10, co... 50 0.072 1
(FP102809) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 50 0.072 1
(AC015918) Homo sapiens chromosome 17 clone CTD-3165O8 map 1... 50 0.072 1
(EY310623) CAWX22255.fwd CAWX Helobdella robusta Primary Ear... 50 0.072 1
(EY302395) CAWX16130.fwd CAWX Helobdella robusta Primary Ear... 50 0.072 1
(AM436965) Vitis vinifera contig VV78X063704.11, whole genom... 48 0.099 2
(CU927887) Zebrafish DNA sequence from clone CH73-376K6 in l... 48 0.29 1
(AL929009) Zebrafish DNA sequence from clone CH211-202A8 in ... 48 0.29 1
(AM483136) Vitis vinifera contig VV78X121680.6, whole genome... 48 0.29 1
(AL844504) Plasmodium falciparum 3D7 chromosome 5. 48 0.29 1
(AC162067) Bos taurus clone CH240-112O8, WORKING DRAFT SEQUE... 48 0.29 1
(AC159559) Bos taurus clone CH240-52N6, WORKING DRAFT SEQUEN... 48 0.29 1
(AC141089) Rattus norvegicus clone CH230-316N7, WORKING DRAF... 48 0.29 1
(AC109379) Rattus norvegicus clone CH230-49G5, *** SEQUENCIN... 48 0.29 1
(AC187458) Dasypus novemcinctus clone VMRC5-443F12, WORKING ... 48 0.29 1
(DT343485) JGI_CAAX8261.rev CAAX Pimephales promelas testis ... 48 0.29 1
(DT317461) JGI_CAAX6064.rev CAAX Pimephales promelas testis ... 48 0.29 1
(DT312125) JGI_CAAX2778.rev CAAX Pimephales promelas testis ... 48 0.29 1
(DT129117) JGI_ANNO12079.rev ANNO Pimephales promelas Whole ... 48 0.29 1
(CP001348) Clostridium cellulolyticum H10, complete genome. 48 0.29 1
(AC193799) Pan troglodytes BAC clone CH251-428A17 from chrom... 44 0.34 2
(DD010735) Diagnosis of known genetic Parameters within the ... 40 0.76 3
(DX544389) GH_MBb0062P12r GH_MBb Gossypium hirsutum genomic ... 36 0.78 2
(BX510646) Zebrafish DNA sequence from clone CH211-221B16 in... 46 0.79 3
(EI403522) MUGQ_CH252P522F12T7_GL502_044 CHORI-252 Vervet Mo... 36 0.80 2
(CG696943) MUGQ_CH252P002Q1SP6_H04_CD317_022 CHORI-252 Verve... 36 0.80 2
(AX344946) Sequence 17 from Patent WO0200928. 38 0.97 3
(CU929186) Zebrafish DNA sequence from clone CH73-10I7 in li... 46 1.1 1
(CU570988) Zebrafish DNA sequence from clone CH73-45O6 in li... 46 1.1 1
(CT573231) Zebrafish DNA sequence from clone DKEY-15G19 in l... 46 1.1 1
(CR925778) Zebrafish DNA sequence from clone DKEY-63L2 in li... 46 1.1 1
(CR847549) Zebrafish DNA sequence from clone CH211-260H7 in ... 46 1.1 1
(CR545478) Zebrafish DNA sequence from clone DKEY-124A17 in ... 46 1.1 1
(CR388050) Zebrafish DNA sequence from clone CH211-287N14 in... 46 1.1 1
(CR356233) Zebrafish DNA sequence from clone CH211-262N1 in ... 46 1.1 1
(BX511008) Zebrafish DNA sequence from clone DKEY-109I21 in ... 46 1.1 1
(BX000985) Zebrafish DNA sequence from clone DKEY-13M3 in li... 46 1.1 1
(BV416443) S229P6216FB2.T0 GermanShepherd Canis familiaris S... 46 1.1 1
(AC158638) Mus musculus 10 BAC RP24-117O6 (Roswell Park Canc... 46 1.1 1
(AC153511) Mus musculus 10 BAC RP23-102N12 (Roswell Park Can... 46 1.1 1
(AC126866) Rattus norvegicus clone CH230-41A13, WORKING DRAF... 46 1.1 1
(AC108962) Rattus norvegicus clone CH230-272B11, *** SEQUENC... 46 1.1 1
(CU929377) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 46 1.1 1
(CU929242) Zebrafish DNA sequence *** SEQUENCING CANCELLED *... 46 1.1 1
(CT956044) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 46 1.1 1
(CR628401) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 46 1.1 1
(AC218741) Bos taurus clone CH240-295E6, WORKING DRAFT SEQUE... 46 1.1 1
(FI166238) RA-YM 34 Riemerella anantipestifer RA-YM, serovar... 46 1.1 1
(EI290102) GM_WBc0011G22.f GM_WBc Glycine max genomic clone ... 46 1.1 1
(AL294937) Tetraodon nigroviridis genome survey sequence T7 ... 46 1.1 1
(BX200900) Danio rerio genomic clone DKEY-217C12, genomic su... 46 1.1 1
(CB380118) rq71a02.y1 Heterodera glycines egg Heterodera gly... 46 1.1 1
(AM398681) Flavobacterium psychrophilum JIP02/86 complete ge... 46 1.1 1
(AL109767) Human chromosome 14 DNA sequence BAC R-889B13 of ... 44 1.2 2
(AC210373) Pongo abelii BAC clone CH276-521E8 from chromosom... 44 1.2 2
(AC104215) Mus musculus chromosome 7, clone RP23-44I18, comp... 40 1.4 2
(AC206679) Zea mays chromosome 1 clone CH201-27O18; ZMMBBc00... 34 2.3 2
(CU855748) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 34 2.3 2
(AL928856) Mouse DNA sequence from clone RP23-413G24 on chro... 34 2.3 2
(AC037448) Homo sapiens chromosome 14 clone RP11-671J2 map 1... 44 2.4 3
(CG257966) OGYBS51TH ZM_0.7_1.5_KB Zea mays genomic clone ZM... 34 3.0 2
(CZ757572) OC__Ba0109N19.f OC__Ba Oryza coarctata genomic cl... 32 3.0 2
(EA102662) Sequence 45 from patent US 7195870. 32 3.9 3
(AX345548) Sequence 619 from Patent WO0200928. 32 3.9 3
(AX277882) Sequence 45 from Patent WO0177375. 32 3.9 3
(BT003190) Drosophila melanogaster RE62261 full insert cDNA. 40 4.0 2
(AC234989) Choloepus hoffmanni clone CH281-776N6, WORKING DR... 36 4.1 4
(AM652494) Entamoeba moshkovskii FIC GSS, clone mosh118c09.q1k. 38 4.4 2
(CU019656) Zebrafish DNA sequence from clone DKEY-234C19 in ... 44 4.5 1
(CR450847) Zebrafish DNA sequence from clone CH211-235J21 in... 44 4.5 1
(BX539321) Zebrafish DNA sequence from clone CH211-223F3 in ... 44 4.5 1
(BX004808) Zebrafish DNA sequence from clone CH211-51B23 in ... 44 4.5 1
(BX001029) Zebrafish DNA sequence from clone CH211-273K1 in ... 44 4.5 1
(AL808112) Mouse DNA sequence from clone RP23-57N22 on chrom... 44 4.5 1
(AC163029) Mus musculus chromosome 1, clone RP23-267I23, com... 44 4.5 1
(AC105151) Mus musculus chromosome 1, clone RP23-28N2, compl... 44 4.5 1
(AM459125) Vitis vinifera contig VV78X223827.4, whole genome... 44 4.5 1
(AM427335) Vitis vinifera contig VV78X150018.7, whole genome... 44 4.5 1
(CR848714) Wallaby DNA sequence from clone MEKBa-460J13. 44 4.5 1
(Z81474) Caenorhabditis elegans Cosmid C18D4. 44 4.5 1
(FN357421) Schistosoma mansoni genome sequence supercontig S... 44 4.5 1
(AF099000) Caenorhabditis elegans cosmid Y47G7B, complete se... 44 4.5 1
(AB207899) Tonna luteostoma mitochondrial gene for 16S ribos... 44 4.5 1
(AL512324) Human DNA sequence from clone RP11-432I13 on chro... 44 4.5 1
(AL353684) Human DNA sequence from clone RP11-275A14 on chro... 44 4.5 1
(AL132819) Human chromosome 14 DNA sequence BAC C-2200A16 of... 44 4.5 1
(AC152202) Bos taurus clone CH240-3E22, WORKING DRAFT SEQUEN... 44 4.5 1
(AC137094) Mus musculus clone RP24-375G13, LOW-PASS SEQUENCE... 44 4.5 1
(AC129817) Rattus norvegicus clone CH230-519O11, *** SEQUENC... 44 4.5 1
(AC127762) Rattus norvegicus clone CH230-143E7, WORKING DRAF... 44 4.5 1
(AC127669) Rattus norvegicus clone CH230-7O6, *** SEQUENCING... 44 4.5 1
(AC123492) Rattus norvegicus clone CH230-100L13, WORKING DRA... 44 4.5 1
(AC118315) Rattus norvegicus clone CH230-179G16, WORKING DRA... 44 4.5 1
(AC113755) Rattus norvegicus clone CH230-193C1, *** SEQUENCI... 44 4.5 1
(AC111935) Rattus norvegicus clone CH230-157H19, *** SEQUENC... 44 4.5 1
(AC108242) Rattus norvegicus clone CH230-230G18, *** SEQUENC... 44 4.5 1
(AC096405) Rattus norvegicus clone CH230-58M21, *** SEQUENCI... 44 4.5 1
(AC095502) Rattus norvegicus clone CH230-7P14, *** SEQUENCIN... 44 4.5 1
(FP325321) Brassica rapa subsp. pekinensis clone KBrH051H23,... 44 4.5 1
(CU855661) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 4.5 1
(CU695286) Brassica rapa subsp. pekinensis clone KBrH006C08,... 44 4.5 1
(AC094496) Rattus norvegicus clone CH230-4E1, WORKING DRAFT ... 44 4.5 1
(CT737126) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 44 4.5 1
(AC192143) Pan troglodytes chromosome 10 clone CH251-568L3, ... 44 4.5 1
(AC188502) Gymnogyps californianus clone CH262-225F20, WORKI... 44 4.5 1
(AC183448) Gymnogyps californianus clone CH262-20P14, WORKIN... 44 4.5 1
(AC166194) Aotus nancymaae clone CH258-280B6, WORKING DRAFT ... 44 4.5 1
(AC021726) Homo sapiens chromosome 14 clone RP11-458J9 map 1... 44 4.5 1
(FT143645) Rattus norvegicus DNA, BAC clone: RNB2-331E12, 3'... 44 4.5 1
(FT110992) Rattus norvegicus DNA, BAC clone: RNB2-285J11, 3'... 44 4.5 1
(DX556108) GH_MBb0060G04r GH_MBb Gossypium hirsutum genomic ... 44 4.5 1
(DX405293) GR_Sa0007I10.b1 Gossypium raimondii WGS library G... 44 4.5 1
(DH631569) Rattus norvegicus DNA, BAC clone: RNB1-167O18, 5'... 44 4.5 1
(CC788561) ZMMBBb0157C20.r ZMMBBb Zea mays subsp. mays genom... 44 4.5 1
(BZ037393) oei02c04.g1 B.oleracea002 Brassica oleracea genom... 44 4.5 1
(DW426578) HHAGE026308 Human liver regeneration after partia... 44 4.5 1
(CT630447) Danio rerio EST, clone ZF_mu_76d12 3'. 44 4.5 1
(EY317353) CAWX27520.fwd CAWX Helobdella robusta Primary Ear... 44 4.5 1
(EW833438) G894P585RE18.T0 Ixodes scapularis Pooled Non-infe... 44 4.5 1
(CP000685) Flavobacterium johnsoniae UW101, complete genome. 44 4.5 1
(BV013667) S212P6039FA6.T0 CZECHII/Ei Mus musculus STS genom... 34 4.9 2
(AC009571) Homo sapiens chromosome 4 clone RP11-57A22 map 4,... 42 5.1 4
(BX190374) Danio rerio genomic clone DKEY-204C20, genomic su... 40 5.6 2
(AL732417) Mouse DNA sequence from clone RP23-36F21 on chrom... 36 6.2 4
(BX005136) Mouse DNA sequence from clone RP23-449C14 on chro... 40 6.3 4
(AC149489) Medicago truncatula chromosome 2 clone mth2-24b4,... 34 6.4 4
(BX296527) Zebrafish DNA sequence from clone DKEYP-32C3 in l... 38 6.9 4
(CU467898) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 40 7.1 3
(AC092759) Papio anubis clone RP41-259J8, WORKING DRAFT SEQU... 38 7.6 3
(AE017332) Mycoplasma hyopneumoniae 232, complete genome. 36 8.0 9
(AC216699) Bos taurus Y Chr BAC CH240-160B11 (Children's Hos... 32 8.1 2
(AC179477) Strongylocentrotus purpuratus clone R3-63M1, WORK... 30 8.2 2
(AX339185) Sequence 52 from Patent WO0176451. 36 9.2 2
(AX458553) Sequence 99 from Patent WO0246454. 36 9.3 2
(AC151619) Medicago truncatula clone mth2-35n12, complete se... 38 9.4 2
(EU938372) Acrida willemsei mitochondrion, complete genome. 32 9.4 2
(CT868696) M.truncatula DNA sequence from clone MTH2-66E17 o... 36 9.6 2
(AC145164) Medicago truncatula clone mth2-27j21, complete se... 40 9.7 2
(AX345530) Sequence 601 from Patent WO0200928. 32 9.8 2
(BD460570) Diagnosis of Diseases Associated with Cell Cycle. 36 9.9 2
(BD452492) Diagnosis of Diseases Associated with Cell Cycle. 36 9.9 2
(AX252106) Sequence 367 from Patent WO0168911. 36 9.9 2
(AC231367) Medicago truncatula clone mth2-90l15, WORKING DRA... 36 9.9 2
(CS374631) Sequence 734 from Patent WO2006034879. 32 9.9 2
(CS374359) Sequence 462 from Patent WO2006034879. 32 9.9 2
>(BJ384794) Dictyostelium discoideum cDNA clone:ddc50a24, 3' end,
single read.
Length = 294
Score = 549 bits (277), Expect = e-152
Identities = 292/292 (100%)
Strand = Plus / Minus
Query: 136 attttaagatatccaaaaccaagaacaatatcagaatcaactgcncgttacccaattaat 195
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 293 attttaagatatccaaaaccaagaacaatatcagaatcaactgcncgttacccaattaat 234
Query: 196 aaattcccattgtttttacaattttcagcaacccttgnaccaattattgtggttttagca 255
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 233 aaattcccattgtttttacaattttcagcaacccttgnaccaattattgtggttttagca 174
Query: 256 gcaataacatcattgggttatgttaaaagtttacattgggctgtaattttagtatttggt 315
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 173 gcaataacatcattgggttatgttaaaagtttacattgggctgtaattttagtatttggt 114
Query: 316 ttctttggtgttttatttagttcaanaccattntttttcaatgaaactcaagaaaccatn 375
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 113 ttctttggtgttttatttagttcaanaccattntttttcaatgaaactcaagaaaccatn 54
Query: 376 ttatcaagttcaaagaaaactttcctatgtccattagtaccatttattccaa 427
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53 ttatcaagttcaaagaaaactttcctatgtccattagtaccatttattccaa 2
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Number of Sequences: 108600042
Number of Hits to DB: 476,133,185
Number of extensions: 30987586
Number of successful extensions: 2703871
Number of sequences better than 10.0: 159
Length of query: 427
Length of database: 106,710,029,556
Length adjustment: 23
Effective length of query: 404
Effective length of database: 104,212,228,590
Effective search space: 42101740350360
Effective search space used: 42101740350360
X1: 11 (21.8 bits)
S2: 21 (42.1 bits)
Dictyostelium discoideum cDNA Project Home