Dictyostelium discoideum cDNA Contig-U11881-1

Assembled

Chromosomal Location of Contig-U11881-1

Sequence Contig-U11881-1

CAGATAATTT AAAAAATTCA AATTTAGATC TTAAAGTTGT TTTTAATGAT
GACCCAAAAG AATTTATTGA AAAATGTATT GAAAAATGTA AAGAATATTT
ATCTTTAAAT CCATATTCAT TTGGAGAATT CATTGATAAA GAAAAAGAAA
TGAATGAATA TTTAACAAGA ATTAGTGAAA GATATTATGA TTCATTGATA
AGTGTTGAAT TAACACCACC AGTTATGATG GTACCACCAG GTTCAGAACA
AAGTAAACTT ATAAAGAAAT TAACAGATTC ATTATTAGGT GGTAATAATA
CATTTTCAGT GGTTGTTGGT AAAACTACAT TAATGAATCA TCATTATTAT
CCATTCACTC AATCTTTTCA A--------- -NNNNNNNNN TAATTATTCC
AAATGATGAT GATGATAACG ATAACGATAA TGATAATGAT AATGATAACG
AAATAATTTA TGAATTTAAT TTACCATTAT TATTTGGATT AAAATTAAAA
CTTTCAAGTT GTTTTATTTT AGAATTATTA AATGGTGATT GTCAAGATCA
AGAATTATCA CAACATAGAC AATTATCAAA ACAATTACAA TCACATGATG
TATTGGTTAT GAATGAATTT GAAAAGAGTA AAGAACGTTG TGATGATAAG
TATTGGTTAA AATCACAATT ATCAAAATGG TTTTTAAATG GTGAATTAAA
ATCAACACCA CCAACTGCTA TATTAAATTT AACTTTGAAT TTATTAAATG
AAAGAGATAT ACTATTATCA ATTGAAAAAC AGTCACCACA ATTGTTATTA
TTAGATTTAA ATACAAATTC AAATTCAAAT CAAATTGAAA GAGGTTTAAT
TTTACAACCA AGATCAAATA CAACCGAATC GAATGGTGTT GAATATTTTA
AATCTCCAAA TTCATCAAAG AAATTGGTGA CAAGAGTTTT AGAATTAATT
GATGAAATCG ATACTCAAGA TCATTTAAAT GGTGATGAAT ATTTAATTTC
ACAAGTTATT GATTCTGTTA GAACAAAATC TGATCAAAAA AGATTAATCT
TTAGATTGAA TGCATGTATT GGCAATGAAA CTACACTTTC AATTGTAAAA
GCTGGTACTG TTGATGAATT AATCATTTCC CCTGGTGTTA GAAATTCAAA
ATGGGTATTG GTTCAATCAA TTTTAAATGA TTTACCAATA CCAATTAAAA
AAAGAGATTG GTTACTTTGG TGTGAAATCG CTCAAACTAT TCTTGAAGAA
ATTGATTTAC CATTGATTGG TATTGATATG ATTTTAACAT ATGATCAAGT
TAATCAGCAA TATCAACCTT TTATCTTAGA AGCAAATGCT AGACCAGGTA
GTTTAATTAT GGCTGAAAAA CTACATTTTG ATCAAGAAAC TAATCAATTT
AATCATTCAA CTCCAACAAC TCCAATCTCT ATTAATTGGT GGTATCAAGT
TCAAAGAAAT TCTCATTTAA CAATTAATGA TATTAAAAAT TTAATTTCAA
TTGATTTATT AAAGGATAGA TATAATCAAC AACCACCACT ACAACCACAA
TTACAATATC AACAAAGTTT TAGTGGTGAT AATAATAGTT TTGATAATTT
TAAATTATTA AAAGAAAGAA AACAAAATTT AATTAATCAA TTAGATGTAT
CAATTAAATC TCATTCATTT AATCCATTCT CAAGAGTTGT TGTAGTTTGT
TCAAATGGTA GAGATCGTGT ATTTATGGGA CATAGTGATT TATTAGGATT
AGGTGGTTTC ACTATAAATT CAAATTCAAT GAATGAAATA TTATGTATTG
GTCAATTAAT TAAATCCAAT GGTGGTAATG GTGGAAAAGT AATCATTAGT
AATCAAGATA GTAAACAATT CCCAACTGTT GAAATCTCAA TAGATAATGA
TATCATTAAA CTATTGAAAC AATCTTATGA TTTAAAATCA AAAGAACCAC
TTTGGTCTCA AATTCATTGG GATAGTTATA TCAAATGTTT ATTGGCTTAT
TTAATTCATA AATGTGAAAG TTACCCACAA TCGGTTTTAA ATGATTTAAC
AAAGTTAAAA TCAAAAGATC AATCAATTCT ACTTCATTTC TCAAGTGATG
GATTATTAAA GTTACCAATA TCTGGTGGTG TTAGTTCAAG TAGTGCATTA
ACTGGTGCTT GTATACTTTG TTTAAATAGT TTATTCCATT GGAATCTAAC
AAAAGAACAA ATGGCAAACA CTGATTTCGC TGAATATTTC TTGGGTAAAT
TAGGTGGTGC CTCTGATAAA ACCACTCAGC TATTCTCAAA GAAAGGTAAA
ATTTCAATCA TTGGTTCAAT ACCAGAAAGA TTTATAAAAT CTTTAAAGTT
TCCAAATGAA AAAATAGTTA TTGTAGTTGC ACAATCCCAT ATACCACGTT
TGACAACTCC ACAAGGTAGA GAATGGATTG TTGATCAAAT TGAAGGCACT
AATAAAACAA TTCACAATAA TTCCGTAGAT GTTATCTATC ATTGGGCCCA
TCAAATTATG AAATCATTTG GTTCTCAAGT TTTAATTGAT TCTGTTAACA
TTTTAAAAGA TAAACTTTCA AATCCTTTAG AAATTGAAAA TACCTCAAAG
ATTACAGGTT TCACTGATAT TGAAATGAAA AAACTTTATC TATCATTATC
AAAGAATAAT TTACTTCGTG ACCTTTCTTT AGATGGTGAA ATTGAAAAAC
ATTTCCCAGA ATTAAAAAAT CATCGTTTAA AACGTTATCA AATCATCTAT
AAGCTTTTAT TATTATTACC AGAAACAAAA GTTGATAGAT TTGGTGTAAT
AGAATATTGG AATAGAAAAT CAGTACTATT TGCATTATCT GAATTAGAAA
GAGGTATAGT TTATCAACAA ATTATTACAC TTTTATCAAA TTCCAATTCA
GCTGAATATA ATACAAATAA TAATCATAAT CATCATGATG GTAGTATTGA
TAAAAAACAA GAAAAACAAT TAATTAAAGA TTTAATGAAA ATTATAAAGA
CTGCTCATGA TGGTGATAAA CAAATTCAAG ATTATCGTAA TGGTTTTAAA
GAAACATCTT GGTCAACAAA TCCATTGAAT TGTTTTGATG ATGATACTAT
ATCAAGTTGG ATTGGTGAAA TTGATAAAAT CCTCTTAATT ACAAATCCAT
TATTAGCAAG TACAGGTTGT ATGGGTAGTT TAAATTCTAG TGGTTCATTT
GATTCTTTCA AAAACAATAG TAGTAGTAAT GTTATAAAAT CTTCACCATT
AGGAATTAGT CAAGAGTTTG TTATTCAAAA GGATAAATTT AATCTTTTCT
ACTATTTAAA TAATCCAAAT ACTCATCATG TTGAACTCTC TCTAAAATGT
GGTGGTTTCC AAAGATCATT ACCAGATTTT GATGAAATGG CTGATGAAAT
GACTAAAACT TTCAAAGAAA AAGCTGCCTT AAGAATTAGT GCTGCAGGTT
TAGGTGGTAC AGTTTGTGTT CATACAACAA TTAAAAAATT AAATTCTGTA
ATAACTTGGT TAAATCAAAA GAATTTTATT AATATTAGAA AAATTGATTA
TCCTGGTCCA CCTTCACAAT CTTTATTCCA ATAATAAAAA AATAAAAATA
AAAATATAAA AAATAATAAT AATAATAATA ATAATAATAA TATTAAATAA
ACAAATAAAC AAATAAAAAA TAAAAAATAA AAAAATAAAA AATAAAAAAT
AAAAATTATT ATTTAATTTT

Translated Amino Acid Sequence Contig-U11881-1

DNLKNSNLDLKVVFNDDPKEFIEKCIEKCKEYLSLNPYSFGEFIDKEKEMNEYLTRISER
YYDSLISVELTPPVMMVPPGSEQSKLIKKLTDSLLGGNNTFSVVVGKTTLMNHHYYPFTQ
SFQXXX---

---IIPNDDDDNDNDNDNDNDNEIIYEFNLPLLFGLKLKLSSCFILELLNGDCQDQELSQ
HRQLSKQLQSHDVLVMNEFEKSKERCDDKYWLKSQLSKWFLNGELKSTPPTAILNLTLNL
LNERDILLSIEKQSPQLLLLDLNTNSNSNQIERGLILQPRSNTTESNGVEYFKSPNSSKK
LVTRVLELIDEIDTQDHLNGDEYLISQVIDSVRTKSDQKRLIFRLNACIGNETTLSIVKA
GTVDELIISPGVRNSKWVLVQSILNDLPIPIKKRDWLLWCEIAQTILEEIDLPLIGIDMI
LTYDQVNQQYQPFILEANARPGSLIMAEKLHFDQETNQFNHSTPTTPISINWWYQVQRNS
HLTINDIKNLISIDLLKDRYNQQPPLQPQLQYQQSFSGDNNSFDNFKLLKERKQNLINQL
DVSIKSHSFNPFSRVVVVCSNGRDRVFMGHSDLLGLGGFTINSNSMNEILCIGQLIKSNG
GNGGKVIISNQDSKQFPTVEISIDNDIIKLLKQSYDLKSKEPLWSQIHWDSYIKCLLAYL
IHKCESYPQSVLNDLTKLKSKDQSILLHFSSDGLLKLPISGGVSSSSALTGACILCLNSL
FHWNLTKEQMANTDFAEYFLGKLGGASDKTTQLFSKKGKISIIGSIPERFIKSLKFPNEK
IVIVVAQSHIPRLTTPQGREWIVDQIEGTNKTIHNNSVDVIYHWAHQIMKSFGSQVLIDS
VNILKDKLSNPLEIENTSKITGFTDIEMKKLYLSLSKNNLLRDLSLDGEIEKHFPELKNH
RLKRYQIIYKLLLLLPETKVDRFGVIEYWNRKSVLFALSELERGIVYQQIITLLSNSNSA
EYNTNNNHNHHDGSIDKKQEKQLIKDLMKIIKTAHDGDKQIQDYRNGFKETSWSTNPLNC
FDDDTISSWIGEIDKILLITNPLLASTGCMGSLNSSGSFDSFKNNSSSNVIKSSPLGISQ
EFVIQKDKFNLFYYLNNPNTHHVELSLKCGGFQRSLPDFDEMADEMTKTFKEKAALRISA
AGLGGTVCVHTTIKKLNSVITWLNQKNFINIRKIDYPGPPSQSLFQ**knknkniknnnn
nnnnnnik*tnkqiknkk*knkk*kikiii*f

Homology Contig-U11881-1 vs CSM-Contig

Sequences producing significant alignments:                        (bits)  Value


Contig-U11881-1 (Contig-U11881-1Q) /CSM_Contig/Conti...  6165  0.0
Contig-U10935-1 (Contig-U10935-1Q) /CSM_Contig/Conti...    48  7e-05
Contig-U13930-1 (Contig-U13930-1Q) /CSM_Contig/Conti...    44  0.001
Contig-U12325-1 (Contig-U12325-1Q) /CSM_Contig/Conti...    44  0.001
Contig-U14018-1 (Contig-U14018-1Q) /CSM_Contig/Conti...    42  0.004
Contig-U11959-1 (Contig-U11959-1Q) /CSM_Contig/Conti...    42  0.004
Contig-U10300-1 (Contig-U10300-1Q) /CSM_Contig/Conti...    42  0.004
Contig-U09071-1 (Contig-U09071-1Q) /CSM_Contig/Conti...    42  0.004
Contig-U09061-1 (Contig-U09061-1Q) /CSM_Contig/Conti...    42  0.004
Contig-U05003-1 (Contig-U05003-1Q) /CSM_Contig/Conti...    42  0.004

Homology Contig-U11881-1 vs DNA

Sequences producing significant alignments:                  (bits) Value  N


(BJ352327) Dictyostelium discoideum cDNA clone:dda46k11, 3' ...  1505   0.0    2
(BJ404432) Dictyostelium discoideum cDNA clone:dds28b18, 3' ...  1485   0.0    2
(BJ406970) Dictyostelium discoideum cDNA clone:dds37e02, 3' ...  1445   0.0    1
(BJ354668) Dictyostelium discoideum cDNA clone:dda54j09, 3' ...  1400   0.0    2
(BJ349290) Dictyostelium discoideum cDNA clone:dda36d04, 3' ...  1398   0.0    2
(BJ392670) Dictyostelium discoideum cDNA clone:dds28b18, 5' ...  1241   0.0    1
(BJ384695) Dictyostelium discoideum cDNA clone:ddc50k07, 3' ...  1233   0.0    3
(BJ379724) Dictyostelium discoideum cDNA clone:ddc35e22, 3' ...  1227   0.0    2
(BJ336569) Dictyostelium discoideum cDNA clone:dda54j09, 5' ...  1211   0.0    1
(BJ343091) Dictyostelium discoideum cDNA clone:dda22c02, 3' ...  1156   0.0    1

Homology Contig-U11881-1 vs Protein

Sequences producing significant alignments:                      (bits) Value


FM992688_195(FM992688|pid:none) Candida dubliniensis CD36 chromo...    52   2e-04
(P56091) RecName: Full=Galactokinase;          EC=2.7.1.6; AltNa...    49   0.001
AE014184_124(AE014184|pid:none) Tropheryma whipplei str. Twist, ...    42   0.13
(Q7NAQ4) RecName: Full=Triosephosphate isomerase;          Short...    40   0.64
AF429951_1(AF429951|pid:none) Plasmodium falciparum potential an...    39   1.4
CP001614_2020(CP001614|pid:none) Teredinibacter turnerae T7901, ...    38   2.4
(Q9HDU2) RecName: Full=Galactokinase;          EC=2.7.1.6; AltNa...    37   5.4
(O42821) RecName: Full=Galactokinase;          EC=2.7.1.6; AltNa...    37   5.4
CP001339_2905(CP001339|pid:none) Thioalkalivibrio sp. HL-EbGR7, ...    37   5.4
AF003739_5(AF003739|pid:none) Caenorhabditis elegans cosmid M01D...    37   7.1