Homology Contig-U11872-1 vs Protein
Query= Contig-U11872-1 (Contig-U11872-1Q) /CSM_Contig/Contig-U11872-1Q.Seq.d
(1334 letters)
Database: nrp_B
3,236,559 sequences; 1,051,180,864 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC117176_32(AC117176|pid:none) Dictyostelium discoideum chromoso... 499 e-139
AL935186_4(AL935186|pid:none) Zebrafish DNA sequence from clone ... 86 4e-15
BX005238_5(BX005238|pid:none) Zebrafish DNA sequence from clone ... 86 4e-15
BX005238_7(BX005238|pid:none) Zebrafish DNA sequence from clone ... 86 4e-15
BC162264_1(BC162264|pid:none) Danio rerio heat shock protein 12B... 83 2e-14
AB007877_1(AB007877|pid:none) Homo sapiens KIAA0417 mRNA, comple... 83 3e-14
(O43301) RecName: Full=Heat shock 70 kDa protein 12A; &AB385329... 83 3e-14
(Q9CZJ2) RecName: Full=Heat shock 70 kDa protein 12B; &AK012548... 81 7e-14
BC090857_1(BC090857|pid:none) Homo sapiens heat shock 70kD prote... 80 2e-13
AK056712_1(AK056712|pid:none) Homo sapiens cDNA FLJ32150 fis, cl... 80 2e-13
BC122350_1(BC122350|pid:none) Danio rerio zgc:153612, mRNA (cDNA... 76 3e-12
BC143932_1(BC143932|pid:none) Homo sapiens heat shock 70kD prote... 75 5e-12
CP000283_133(CP000283|pid:none) Rhodopseudomonas palustris BisB5... 70 1e-10
AC115592_24(AC115592|pid:none) Dictyostelium discoideum chromoso... 70 2e-10
CP000463_230(CP000463|pid:none) Rhodopseudomonas palustris BisA5... 69 4e-10
AE017356_24(AE017356|pid:none) Cryptococcus neoformans var. neof... 68 9e-10
CP001096_569(CP001096|pid:none) Rhodopseudomonas palustris TIE-1... 65 6e-09
CP000155_907(CP000155|pid:none) Hahella chejuensis KCTC 2396, co... 59 4e-07
AK294672_1(AK294672|pid:none) Homo sapiens cDNA FLJ54655 complet... 59 5e-07
CU633438_196(CU633438|pid:none) Podospora anserina genomic DNA c... 56 3e-06
AC116977_41(AC116977|pid:none) Dictyostelium discoideum chromoso... 55 4e-06
AC116305_104(AC116305|pid:none) Dictyostelium discoideum chromos... 54 1e-05
CP000155_5640(CP000155|pid:none) Hahella chejuensis KCTC 2396, c... 54 1e-05
AM746676_2221(AM746676|pid:none) Sorangium cellulosum 'So ce 56'... 52 5e-05
CP000113_5001(CP000113|pid:none) Myxococcus xanthus DK 1622, com... 52 6e-05
CP000155_3141(CP000155|pid:none) Hahella chejuensis KCTC 2396, c... 51 8e-05
CP000383_229(CP000383|pid:none) Cytophaga hutchinsonii ATCC 3340... 48 7e-04
CP000568_3076(CP000568|pid:none) Clostridium thermocellum ATCC 2... 47 0.002
CP000509_141(CP000509|pid:none) Nocardioides sp. JS614, complete... 47 0.002
CP001357_1117(CP001357|pid:none) Brachyspira hyodysenteriae WA1,... 44 0.010
CP001393_2029(CP001393|pid:none) Anaerocellum thermophilum DSM 6... 44 0.013
CP000771_94(CP000771|pid:none) Fervidobacterium nodosum Rt17-B1,... 43 0.023
CP000510_1443(CP000510|pid:none) Psychromonas ingrahamii 37, com... 41 0.11
CP001099_212(CP001099|pid:none) Chlorobaculum parvum NCIB 8327, ... 41 0.11
BX908809_19(BX908809|pid:none) Neurospora crassa DNA linkage gro... 40 0.15
CP001110_1027(CP001110|pid:none) Pelodictyon phaeoclathratiforme... 40 0.15
AC117176_31(AC117176|pid:none) Dictyostelium discoideum chromoso... 40 0.15
CP000254_470(CP000254|pid:none) Methanospirillum hungatei JF-1, ... 40 0.15
CP001108_938(CP001108|pid:none) Prosthecochloris aestuarii DSM 2... 40 0.19
CP001097_1334(CP001097|pid:none) Chlorobium limicola DSM 245, co... 39 0.55
AP007175_438(AP007175|pid:none) Aspergillus oryzae RIB40 genomic... 38 0.72
CP001634_1377(CP001634|pid:none) Kosmotoga olearia TBF 19.5.1, c... 38 0.95
CP000393_1057(CP000393|pid:none) Trichodesmium erythraeum IMS101... 38 0.95
CP001634_954(CP001634|pid:none) Kosmotoga olearia TBF 19.5.1, co... 37 1.6
CP000656_4859(CP000656|pid:none) Mycobacterium gilvum PYR-GCK, c... 35 8.0
>AC117176_32(AC117176|pid:none) Dictyostelium discoideum chromosome 2
map 5018074-5200947 strain AX4, complete sequence.
Length = 476
Score = 499 bits (1284), Expect = e-139
Identities = 245/246 (99%), Positives = 246/246 (100%)
Frame = +3
Query: 561 CALHVKSGKEIRHSYDFALDEAESLRRNRLRQEKNKPPVVQLCLMMDCTGSMGSWIKESK 740
CALHVKSGKEIRHSYDFALDEAESLRRNRLRQEKNKPP+VQLCLMMDCTGSMGSWIKESK
Sbjct: 231 CALHVKSGKEIRHSYDFALDEAESLRRNRLRQEKNKPPMVQLCLMMDCTGSMGSWIKESK 290
Query: 741 EKIISLTGLLASSYVGLELNASFIGYRDITDSNRFEVVPFTTDMGYLASKINEAVPTGGG 920
EKIISLTGLLASSYVGLELNASFIGYRDITDSNRFEVVPFTTDMGYLASKINEAVPTGGG
Sbjct: 291 EKIISLTGLLASSYVGLELNASFIGYRDITDSNRFEVVPFTTDMGYLASKINEAVPTGGG 350
Query: 921 DTPEDITGAFLQVNNLSWKPTHTKLVVHVGDAPCHGKKYHNCVDSYPDGDPSGLVPEKLL 1100
DTPEDITGAFLQVNNLSWKPTHTKLVVHVGDAPCHGKKYHNCVDSYPDGDPSGLVPEKLL
Sbjct: 351 DTPEDITGAFLQVNNLSWKPTHTKLVVHVGDAPCHGKKYHNCVDSYPDGDPSGLVPEKLL 410
Query: 1101 QKLSSKSIDYYFIKITSQTDKMIEIFRKSYDSPQKKIVVHDLGSDVSKLLPSLVNFVQTS 1280
QKLSSKSIDYYFIKITSQTDKMIEIFRKSYDSPQKKIVVHDLGSDVSKLLPSLVNFVQTS
Sbjct: 411 QKLSSKSIDYYFIKITSQTDKMIEIFRKSYDSPQKKIVVHDLGSDVSKLLPSLVNFVQTS 470
Query: 1281 ITRFTN 1298
ITRFTN
Sbjct: 471 ITRFTN 476
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 2,146,046,255
Number of extensions: 43082774
Number of successful extensions: 95604
Number of sequences better than 10.0: 45
Number of HSP's gapped: 95546
Number of HSP's successfully gapped: 46
Length of query: 444
Length of database: 1,051,180,864
Length adjustment: 132
Effective length of query: 312
Effective length of database: 623,955,076
Effective search space: 194673983712
Effective search space used: 194673983712
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
Dictyostelium discoideum cDNA Project Home