Dictyostelium discoideum cDNA Contig-U11872-1

Assembled

Chromosomal Location of Contig-U11872-1

Sequence Contig-U11872-1

GTAAATATAA ATATAAATTG GATTTATTTA AAACAATTTT TTAATTTTCA
AAAATAGTAA ACAATGAAAG GTAAAAGTGT TGTAATTGCA ATTGATTTTG
GTACTTCATG TTCTGGGTTT GCATTTGTTT TCCCCCAAGA TATTTCAGAG
ACAGTTTATT GCACTGAAAC TTGGGGTGGG TCATGTTCAA TAAATGTAAA
AACTTTGACG CAAATTGTGT TGGATGAAAA AAAAAAATTT GTTGCATTTG
GTTACNAGGC TANANATTAC TTTTCAAACA ATGATGATGA AGGTNCTGAA
AAACATTCNC TTTACTCCTC TTATAAAATG CATCTATTTA ACCCAAAAAC
TAGAGGCCAA CCAATTAAAT CAGTTTGNGG TAATCATAGT GCAACAATTC
AANAACTCAT TACTGAATCC TTAANATATT TAAAAATTGT TGCAATGAAT
AAGGTAAATA GTATATCTTC CAAAAAAGTT TATGAATCCG AAGTTCAATG
GGTATTAACA ATCCCTGCAA TTTGGGATGA CTCTAGTAAA CAAGTAATGA
---------- TGTGCATTAC ATGTAAAATC GGGAAAGGAA ATTAGACATT
CTTACGACTT TGCACTCGAT GAAGCAGAAT CATTAAGAAG AAATAGATTA
CGTCAAGAAA AGAATAAACC CCCAGTGGTA CAACTTTGCC TCATGATGGA
TTGCACTGGT AGTATGGGCT CATGGATTAA AGAAAGTAAA GAAAAAATTA
TTTCATTAAC TGGATTATTA GCCAGCTCAT ATGTAGGTTT GGAATTGAAT
GCAAGTTTCA TAGGTTATCG TGATATTACT GATTCCAATA GATTTGAGGT
TGTACCATTT ACAACGGATA TGGGATATCT TGCTTCCAAA ATTAATGAAG
CAGTTCCAAC AGGTGGTGGT GATACTCCAG AAGATATTAC AGGTGCTTTT
TTACAAGTAA ATAACCTATC GTGGAAACCA ACTCATACTA AACTTGTTGT
CCATGTAGGC GATGCACCAT GCCACGGCAA AAAATATCAT AATTGTGTTG
ATTCATATCC AGATGGTGAC CCAAGTGGTT TGGTTCCAGA AAAACTTTTA
CAAAAATTAT CTTCAAAATC AATTGACTAT TATTTCATTA AAATCACATC
TCAAACTGAT AAGATGATTG AAATTTTTAG AAAGTCATAT GACTCACCTC
AAAAAAAGAT TGTAGTTCAT GACCTTGGAT CAGATGTCTC AAAATTATTA
CCTTCTTTAG TTAACTTTGT TCAAACCTCT ATTACCAGAT TTACAAATTA
AAAAATAATA ANATCCCTTA AAAANAAATA AAAT

Translated Amino Acid Sequence Contig-U11872-1

vnininwiylkqffnfqk**TMKGKSVVIAIDFGTSCSGFAFVFPQDISETVYCTETWGG
SCSINVKTLTQIVLDEKKKFVAFGYXAXXYFSNNDDEGXEKHSLYSSYKMHLFNPKTRGQ
PIKSVXGNHSATIQXLITESLXYLKIVAMNKVNSISSKKVYESEVQWVLTIPAIWDDSSK
QVM---

---CALHVKSGKEIRHSYDFALDEAESLRRNRLRQEKNKPPVVQLCLMMDCTGSMGSWIK
ESKEKIISLTGLLASSYVGLELNASFIGYRDITDSNRFEVVPFTTDMGYLASKINEAVPT
GGGDTPEDITGAFLQVNNLSWKPTHTKLVVHVGDAPCHGKKYHNCVDSYPDGDPSGLVPE
KLLQKLSSKSIDYYFIKITSQTDKMIEIFRKSYDSPQKKIVVHDLGSDVSKLLPSLVNFV
QTSITRFTN*kiixslkxk*n

Homology Contig-U11872-1 vs CSM-Contig

Sequences producing significant alignments:                        (bits)  Value


Contig-U11872-1 (Contig-U11872-1Q) /CSM_Contig/Conti...  2228  0.0
Contig-U06351-1 (Contig-U06351-1Q) /CSM_Contig/Conti...    44  4e-04
Contig-U04157-1 (Contig-U04157-1Q) /CSM_Contig/Conti...    38  0.024
Contig-U13973-1 (Contig-U13973-1Q) /CSM_Contig/Conti...    36  0.095
Contig-U10372-1 (Contig-U10372-1Q) /CSM_Contig/Conti...    36  0.095
Contig-U07064-1 (Contig-U07064-1Q) /CSM_Contig/Conti...    36  0.095
Contig-U14562-1 (Contig-U14562-1Q) /CSM_Contig/Conti...    34  0.37
Contig-U12799-1 (Contig-U12799-1Q) /CSM_Contig/Conti...    34  0.37
Contig-U10384-1 (Contig-U10384-1Q) /CSM_Contig/Conti...    34  0.37
Contig-U09446-1 (Contig-U09446-1Q) /CSM_Contig/Conti...    34  0.37

Homology Contig-U11872-1 vs DNA

Sequences producing significant alignments:                  (bits) Value  N


(BJ384393) Dictyostelium discoideum cDNA clone:ddc49e09, 3' ...  1269   0.0    4
(BJ444198) Dictyostelium discoideum cDNA clone:ddv55h13, 3' ...  1203   0.0    2
(BJ425395) Dictyostelium discoideum cDNA clone:ddv55h13, 5' ...   573   0.0    2
(BJ369094) Dictyostelium discoideum cDNA clone:ddc49e09, 5' ...   319   5e-87  2
(EH783171) CNSS22400.b1_P07.ab1 CNS(LMS) yellow starthistle ...    52   0.059  1
(EH780893) CNSS19731.b1_F13.ab1 CNS(LMS) yellow starthistle ...    52   0.059  1
(EH778885) CNSS17714.b1_C13.ab1 CNS(LMS) yellow starthistle ...    52   0.059  1
(AC163335) Mus musculus chromosome 7, clone RP24-149G13, com...    50   0.23   1
(AC158345) Mus musculus chromosome 7, clone RP23-271M19, com...    50   0.23   1
(AC163005) Callicebus moloch clone LB5-96I1, WORKING DRAFT S...    38   0.51   2

Homology Contig-U11872-1 vs Protein

Sequences producing significant alignments:                      (bits) Value


AC117176_32(AC117176|pid:none) Dictyostelium discoideum chromoso...   499   e-139
AL935186_4(AL935186|pid:none) Zebrafish DNA sequence from clone ...    86   4e-15
BX005238_5(BX005238|pid:none) Zebrafish DNA sequence from clone ...    86   4e-15
BX005238_7(BX005238|pid:none) Zebrafish DNA sequence from clone ...    86   4e-15
BC162264_1(BC162264|pid:none) Danio rerio heat shock protein 12B...    83   2e-14
AB007877_1(AB007877|pid:none) Homo sapiens KIAA0417 mRNA, comple...    83   3e-14
(O43301) RecName: Full=Heat shock 70 kDa protein 12A;  &AB385329...    83   3e-14
(Q9CZJ2) RecName: Full=Heat shock 70 kDa protein 12B;  &AK012548...    81   7e-14
BC090857_1(BC090857|pid:none) Homo sapiens heat shock 70kD prote...    80   2e-13
AK056712_1(AK056712|pid:none) Homo sapiens cDNA FLJ32150 fis, cl...    80   2e-13